Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybeZ and ybeY overlap by 4 nucleotides ybeY and corC are separated by 89 nucleotides corC and lnt are separated by 24 nucleotides
MCAODC_26445: ybeZ - PhoH-like protein, at 2,007,215 to 2,008,294
ybeZ
MCAODC_26450: ybeY - rRNA maturation RNase YbeY, at 2,008,291 to 2,008,758
ybeY
MCAODC_26455: corC - CNNM family magnesium/cobalt transport protein CorC, at 2,008,848 to 2,009,726
corC
MCAODC_26460: lnt - apolipoprotein N-acyltransferase, at 2,009,751 to 2,011,289
lnt
Position (kb)
2008
2009 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2007.394 kb on + strand, within ybeZ at 2007.445 kb on + strand, within ybeZ at 2007.445 kb on + strand, within ybeZ at 2007.452 kb on + strand, within ybeZ at 2007.603 kb on + strand, within ybeZ at 2007.635 kb on + strand, within ybeZ at 2007.664 kb on + strand, within ybeZ at 2007.664 kb on + strand, within ybeZ at 2007.701 kb on + strand, within ybeZ at 2007.754 kb on + strand, within ybeZ at 2007.777 kb on + strand, within ybeZ at 2007.836 kb on + strand, within ybeZ at 2007.836 kb on + strand, within ybeZ at 2007.935 kb on + strand, within ybeZ at 2007.935 kb on + strand, within ybeZ at 2007.935 kb on + strand, within ybeZ at 2007.935 kb on + strand, within ybeZ at 2007.935 kb on + strand, within ybeZ at 2007.935 kb on + strand, within ybeZ at 2007.937 kb on + strand, within ybeZ at 2007.949 kb on + strand, within ybeZ at 2007.949 kb on + strand, within ybeZ at 2008.087 kb on + strand, within ybeZ at 2008.093 kb on + strand, within ybeZ at 2008.104 kb on + strand, within ybeZ at 2008.104 kb on + strand, within ybeZ at 2008.104 kb on + strand, within ybeZ at 2008.104 kb on + strand, within ybeZ at 2008.738 kb on + strand at 2008.738 kb on + strand at 2008.820 kb on + strand at 2008.824 kb on + strand at 2008.824 kb on + strand at 2008.824 kb on + strand at 2008.824 kb on + strand at 2008.824 kb on + strand at 2008.871 kb on + strand at 2009.006 kb on + strand, within corC at 2009.263 kb on + strand, within corC at 2009.263 kb on + strand, within corC at 2009.291 kb on + strand, within corC at 2009.666 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 2,007,394 + ybeZ MCAODC_26445 0.17 -1.2 2,007,445 + ybeZ MCAODC_26445 0.21 -0.9 2,007,445 + ybeZ MCAODC_26445 0.21 -0.2 2,007,452 + ybeZ MCAODC_26445 0.22 +0.5 2,007,603 + ybeZ MCAODC_26445 0.36 +0.2 2,007,635 + ybeZ MCAODC_26445 0.39 +1.7 2,007,664 + ybeZ MCAODC_26445 0.42 -0.1 2,007,664 + ybeZ MCAODC_26445 0.42 -0.9 2,007,701 + ybeZ MCAODC_26445 0.45 -0.5 2,007,754 + ybeZ MCAODC_26445 0.50 -0.1 2,007,777 + ybeZ MCAODC_26445 0.52 +0.2 2,007,836 + ybeZ MCAODC_26445 0.57 -0.8 2,007,836 + ybeZ MCAODC_26445 0.57 +0.5 2,007,935 + ybeZ MCAODC_26445 0.67 -1.3 2,007,935 + ybeZ MCAODC_26445 0.67 +1.0 2,007,935 + ybeZ MCAODC_26445 0.67 +1.6 2,007,935 + ybeZ MCAODC_26445 0.67 -0.7 2,007,935 + ybeZ MCAODC_26445 0.67 +1.3 2,007,935 + ybeZ MCAODC_26445 0.67 +0.0 2,007,937 + ybeZ MCAODC_26445 0.67 -0.9 2,007,949 + ybeZ MCAODC_26445 0.68 +0.3 2,007,949 + ybeZ MCAODC_26445 0.68 -0.2 2,008,087 + ybeZ MCAODC_26445 0.81 -0.3 2,008,093 + ybeZ MCAODC_26445 0.81 +0.2 2,008,104 + ybeZ MCAODC_26445 0.82 -1.3 2,008,104 + ybeZ MCAODC_26445 0.82 +0.3 2,008,104 + ybeZ MCAODC_26445 0.82 +0.4 2,008,104 + ybeZ MCAODC_26445 0.82 +2.2 2,008,738 + -0.2 2,008,738 + -0.5 2,008,820 + -1.8 2,008,824 + -1.4 2,008,824 + -0.5 2,008,824 + -0.7 2,008,824 + -0.5 2,008,824 + -0.1 2,008,871 + -1.5 2,009,006 + corC MCAODC_26455 0.18 +0.2 2,009,263 + corC MCAODC_26455 0.47 +0.8 2,009,263 + corC MCAODC_26455 0.47 +0.2 2,009,291 + corC MCAODC_26455 0.50 +0.2 2,009,666 + -0.1
Or see this region's nucleotide sequence