Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycbZ and fabA overlap by 40 nucleotides fabA and rmf are separated by 69 nucleotides rmf and pqiC are separated by 255 nucleotides
MCAODC_24635: ycbZ - Putative Lon protease-like protein, at 1,632,942 to 1,634,702
ycbZ
MCAODC_24640: fabA - bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase, at 1,634,663 to 1,635,289
fabA
MCAODC_24645: rmf - ribosome modulation factor, at 1,635,359 to 1,635,526
rmf
MCAODC_24650: pqiC - membrane integrity-associated transporter subunit PqiC, at 1,635,782 to 1,636,345
pqiC
Position (kb)
1634
1635
1636 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1633.712 kb on + strand, within ycbZ at 1633.720 kb on + strand, within ycbZ at 1633.720 kb on + strand, within ycbZ at 1633.720 kb on + strand, within ycbZ at 1633.720 kb on + strand, within ycbZ at 1633.754 kb on + strand, within ycbZ at 1633.773 kb on + strand, within ycbZ at 1633.931 kb on + strand, within ycbZ at 1633.931 kb on + strand, within ycbZ at 1633.932 kb on - strand, within ycbZ at 1634.061 kb on - strand, within ycbZ at 1634.075 kb on + strand, within ycbZ at 1634.232 kb on + strand, within ycbZ at 1634.374 kb on + strand, within ycbZ at 1634.470 kb on + strand, within ycbZ at 1634.470 kb on + strand, within ycbZ at 1634.500 kb on + strand, within ycbZ at 1634.530 kb on + strand at 1634.672 kb on - strand at 1635.291 kb on + strand at 1635.306 kb on + strand at 1635.368 kb on + strand at 1635.369 kb on - strand at 1635.369 kb on - strand at 1635.543 kb on - strand at 1635.575 kb on - strand at 1635.596 kb on - strand at 1635.596 kb on - strand at 1635.602 kb on + strand at 1635.652 kb on - strand at 1635.652 kb on - strand at 1635.720 kb on - strand at 1635.788 kb on + strand at 1635.789 kb on - strand at 1635.798 kb on - strand at 1635.812 kb on - strand at 1635.812 kb on - strand at 1635.976 kb on + strand, within pqiC at 1636.135 kb on - strand, within pqiC at 1636.135 kb on - strand, within pqiC at 1636.180 kb on - strand, within pqiC at 1636.203 kb on - strand, within pqiC at 1636.209 kb on - strand, within pqiC at 1636.263 kb on - strand, within pqiC at 1636.273 kb on - strand, within pqiC
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 1,633,712 + ycbZ MCAODC_24635 0.44 -1.8 1,633,720 + ycbZ MCAODC_24635 0.44 +0.1 1,633,720 + ycbZ MCAODC_24635 0.44 -0.6 1,633,720 + ycbZ MCAODC_24635 0.44 -0.4 1,633,720 + ycbZ MCAODC_24635 0.44 +0.1 1,633,754 + ycbZ MCAODC_24635 0.46 +0.0 1,633,773 + ycbZ MCAODC_24635 0.47 +0.3 1,633,931 + ycbZ MCAODC_24635 0.56 +0.7 1,633,931 + ycbZ MCAODC_24635 0.56 -1.3 1,633,932 - ycbZ MCAODC_24635 0.56 -1.3 1,634,061 - ycbZ MCAODC_24635 0.64 +0.7 1,634,075 + ycbZ MCAODC_24635 0.64 +0.8 1,634,232 + ycbZ MCAODC_24635 0.73 +0.9 1,634,374 + ycbZ MCAODC_24635 0.81 -0.8 1,634,470 + ycbZ MCAODC_24635 0.87 +1.2 1,634,470 + ycbZ MCAODC_24635 0.87 +0.1 1,634,500 + ycbZ MCAODC_24635 0.88 -2.1 1,634,530 + +0.6 1,634,672 - +0.8 1,635,291 + +0.3 1,635,306 + -0.7 1,635,368 + +0.1 1,635,369 - -0.1 1,635,369 - +0.1 1,635,543 - +2.6 1,635,575 - -0.5 1,635,596 - -1.5 1,635,596 - -1.0 1,635,602 + +1.7 1,635,652 - -0.6 1,635,652 - +2.6 1,635,720 - +0.6 1,635,788 + -0.2 1,635,789 - -0.6 1,635,798 - +0.1 1,635,812 - +0.2 1,635,812 - +0.7 1,635,976 + pqiC MCAODC_24650 0.34 -0.0 1,636,135 - pqiC MCAODC_24650 0.63 +0.5 1,636,135 - pqiC MCAODC_24650 0.63 +0.0 1,636,180 - pqiC MCAODC_24650 0.71 +0.4 1,636,203 - pqiC MCAODC_24650 0.75 -0.6 1,636,209 - pqiC MCAODC_24650 0.76 +0.2 1,636,263 - pqiC MCAODC_24650 0.85 -0.2 1,636,273 - pqiC MCAODC_24650 0.87 +0.4
Or see this region's nucleotide sequence