Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt wrbA and yccJ are separated by 20 nucleotides yccJ and agp are separated by 37 nucleotides agp and MCAODC_24055 are separated by 290 nucleotides MCAODC_24055 and MCAODC_24060 are separated by 109 nucleotides
MCAODC_24040: wrbA - NAD(P)H:quinone oxidoreductase, at 1,534,286 to 1,534,882
wrbA
MCAODC_24045: yccJ - Uncharacterized protein YccJ, at 1,534,903 to 1,535,130
yccJ
MCAODC_24050: agp - bifunctional glucose-1-phosphatase/inositol phosphatase, at 1,535,168 to 1,536,409
agp
MCAODC_24055: MCAODC_24055 - YccE, at 1,536,700 to 1,536,948
_24055
MCAODC_24060: MCAODC_24060 - YccE, at 1,537,058 to 1,537,957
_24060
Position (kb) 1535
1536
1537 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1534.224 kb on + strand at 1534.235 kb on - strand at 1534.259 kb on + strand at 1534.265 kb on + strand at 1534.265 kb on + strand at 1534.265 kb on + strand at 1534.265 kb on + strand at 1534.291 kb on + strand at 1534.319 kb on + strand at 1534.320 kb on - strand at 1534.327 kb on + strand at 1534.490 kb on + strand, within wrbA at 1534.491 kb on - strand, within wrbA at 1534.501 kb on + strand, within wrbA at 1534.511 kb on - strand, within wrbA at 1534.593 kb on + strand, within wrbA at 1534.594 kb on - strand, within wrbA at 1534.826 kb on - strand at 1534.847 kb on + strand at 1534.848 kb on - strand at 1534.848 kb on - strand at 1534.960 kb on - strand, within yccJ at 1535.071 kb on - strand, within yccJ at 1535.119 kb on - strand at 1535.204 kb on - strand at 1535.204 kb on - strand at 1535.246 kb on + strand at 1535.303 kb on + strand, within agp at 1535.304 kb on - strand, within agp at 1535.304 kb on - strand, within agp at 1535.304 kb on - strand, within agp at 1535.304 kb on - strand, within agp at 1535.322 kb on + strand, within agp at 1535.323 kb on - strand, within agp at 1535.431 kb on - strand, within agp at 1535.486 kb on + strand, within agp at 1535.487 kb on - strand, within agp at 1535.487 kb on - strand, within agp at 1535.540 kb on - strand, within agp at 1535.542 kb on - strand, within agp at 1535.587 kb on + strand, within agp at 1535.588 kb on - strand, within agp at 1535.691 kb on + strand, within agp at 1535.691 kb on + strand, within agp at 1535.691 kb on + strand, within agp at 1535.691 kb on + strand, within agp at 1535.692 kb on - strand, within agp at 1535.692 kb on - strand, within agp at 1535.692 kb on - strand, within agp at 1535.694 kb on + strand, within agp at 1535.694 kb on + strand, within agp at 1535.714 kb on + strand, within agp at 1535.714 kb on + strand, within agp at 1535.714 kb on + strand, within agp at 1535.715 kb on - strand, within agp at 1535.767 kb on - strand, within agp at 1535.783 kb on - strand, within agp at 1535.783 kb on - strand, within agp at 1535.822 kb on - strand, within agp at 1535.841 kb on + strand, within agp at 1535.841 kb on + strand, within agp at 1535.842 kb on - strand, within agp at 1535.842 kb on - strand, within agp at 1535.861 kb on + strand, within agp at 1535.862 kb on - strand, within agp at 1535.878 kb on + strand, within agp at 1535.963 kb on - strand, within agp at 1535.977 kb on + strand, within agp at 1536.010 kb on + strand, within agp at 1536.011 kb on - strand, within agp at 1536.062 kb on - strand, within agp at 1536.081 kb on + strand, within agp at 1536.088 kb on - strand, within agp at 1536.123 kb on - strand, within agp at 1536.123 kb on - strand, within agp at 1536.123 kb on - strand, within agp at 1536.156 kb on + strand, within agp at 1536.156 kb on + strand, within agp at 1536.157 kb on - strand, within agp at 1536.168 kb on + strand, within agp at 1536.168 kb on + strand, within agp at 1536.168 kb on + strand, within agp at 1536.168 kb on + strand, within agp at 1536.168 kb on + strand, within agp at 1536.168 kb on + strand, within agp at 1536.169 kb on - strand, within agp at 1536.169 kb on - strand, within agp at 1536.169 kb on - strand, within agp at 1536.169 kb on - strand, within agp at 1536.169 kb on - strand, within agp at 1536.169 kb on - strand, within agp at 1536.180 kb on - strand, within agp at 1536.284 kb on + strand, within agp at 1536.285 kb on - strand at 1536.285 kb on - strand at 1536.285 kb on - strand at 1536.289 kb on + strand at 1536.371 kb on + strand at 1536.549 kb on + strand at 1536.550 kb on - strand at 1536.687 kb on + strand at 1536.702 kb on - strand at 1536.889 kb on - strand, within MCAODC_24055 at 1537.030 kb on + strand at 1537.161 kb on - strand, within MCAODC_24060
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 1,534,224 + -0.6 1,534,235 - -0.4 1,534,259 + +0.5 1,534,265 + +0.9 1,534,265 + +0.9 1,534,265 + -0.8 1,534,265 + -0.7 1,534,291 + +0.2 1,534,319 + +0.4 1,534,320 - -0.2 1,534,327 + +0.4 1,534,490 + wrbA MCAODC_24040 0.34 +1.6 1,534,491 - wrbA MCAODC_24040 0.34 +0.9 1,534,501 + wrbA MCAODC_24040 0.36 -0.2 1,534,511 - wrbA MCAODC_24040 0.38 +0.1 1,534,593 + wrbA MCAODC_24040 0.51 -2.6 1,534,594 - wrbA MCAODC_24040 0.52 -0.7 1,534,826 - +0.1 1,534,847 + +0.5 1,534,848 - +0.1 1,534,848 - +0.1 1,534,960 - yccJ MCAODC_24045 0.25 +0.4 1,535,071 - yccJ MCAODC_24045 0.74 -0.5 1,535,119 - +0.0 1,535,204 - +0.2 1,535,204 - +0.4 1,535,246 + -0.5 1,535,303 + agp MCAODC_24050 0.11 +1.1 1,535,304 - agp MCAODC_24050 0.11 +0.2 1,535,304 - agp MCAODC_24050 0.11 +0.3 1,535,304 - agp MCAODC_24050 0.11 +0.1 1,535,304 - agp MCAODC_24050 0.11 +0.5 1,535,322 + agp MCAODC_24050 0.12 -1.2 1,535,323 - agp MCAODC_24050 0.12 -0.3 1,535,431 - agp MCAODC_24050 0.21 +0.2 1,535,486 + agp MCAODC_24050 0.26 -0.8 1,535,487 - agp MCAODC_24050 0.26 -0.1 1,535,487 - agp MCAODC_24050 0.26 +0.5 1,535,540 - agp MCAODC_24050 0.30 +0.9 1,535,542 - agp MCAODC_24050 0.30 -0.4 1,535,587 + agp MCAODC_24050 0.34 +0.5 1,535,588 - agp MCAODC_24050 0.34 +0.5 1,535,691 + agp MCAODC_24050 0.42 +0.2 1,535,691 + agp MCAODC_24050 0.42 +0.3 1,535,691 + agp MCAODC_24050 0.42 -0.3 1,535,691 + agp MCAODC_24050 0.42 -2.3 1,535,692 - agp MCAODC_24050 0.42 +0.3 1,535,692 - agp MCAODC_24050 0.42 +0.3 1,535,692 - agp MCAODC_24050 0.42 +0.4 1,535,694 + agp MCAODC_24050 0.42 +0.0 1,535,694 + agp MCAODC_24050 0.42 +0.7 1,535,714 + agp MCAODC_24050 0.44 +0.4 1,535,714 + agp MCAODC_24050 0.44 -2.4 1,535,714 + agp MCAODC_24050 0.44 -0.2 1,535,715 - agp MCAODC_24050 0.44 -1.7 1,535,767 - agp MCAODC_24050 0.48 +0.6 1,535,783 - agp MCAODC_24050 0.50 +0.5 1,535,783 - agp MCAODC_24050 0.50 +0.7 1,535,822 - agp MCAODC_24050 0.53 -0.6 1,535,841 + agp MCAODC_24050 0.54 -1.2 1,535,841 + agp MCAODC_24050 0.54 -1.9 1,535,842 - agp MCAODC_24050 0.54 -1.2 1,535,842 - agp MCAODC_24050 0.54 -1.0 1,535,861 + agp MCAODC_24050 0.56 -0.5 1,535,862 - agp MCAODC_24050 0.56 +0.8 1,535,878 + agp MCAODC_24050 0.57 +0.0 1,535,963 - agp MCAODC_24050 0.64 -0.4 1,535,977 + agp MCAODC_24050 0.65 +1.0 1,536,010 + agp MCAODC_24050 0.68 -2.2 1,536,011 - agp MCAODC_24050 0.68 -0.1 1,536,062 - agp MCAODC_24050 0.72 -1.7 1,536,081 + agp MCAODC_24050 0.74 -0.0 1,536,088 - agp MCAODC_24050 0.74 +0.9 1,536,123 - agp MCAODC_24050 0.77 +1.2 1,536,123 - agp MCAODC_24050 0.77 -0.1 1,536,123 - agp MCAODC_24050 0.77 -0.8 1,536,156 + agp MCAODC_24050 0.80 -0.5 1,536,156 + agp MCAODC_24050 0.80 -0.9 1,536,157 - agp MCAODC_24050 0.80 -1.6 1,536,168 + agp MCAODC_24050 0.81 -1.3 1,536,168 + agp MCAODC_24050 0.81 +1.1 1,536,168 + agp MCAODC_24050 0.81 +3.0 1,536,168 + agp MCAODC_24050 0.81 -2.4 1,536,168 + agp MCAODC_24050 0.81 -0.7 1,536,168 + agp MCAODC_24050 0.81 -1.1 1,536,169 - agp MCAODC_24050 0.81 -0.5 1,536,169 - agp MCAODC_24050 0.81 +0.8 1,536,169 - agp MCAODC_24050 0.81 +0.1 1,536,169 - agp MCAODC_24050 0.81 +1.9 1,536,169 - agp MCAODC_24050 0.81 +0.9 1,536,169 - agp MCAODC_24050 0.81 -3.0 1,536,180 - agp MCAODC_24050 0.81 -0.9 1,536,284 + agp MCAODC_24050 0.90 +0.1 1,536,285 - +0.1 1,536,285 - +0.2 1,536,285 - +0.3 1,536,289 + +0.5 1,536,371 + -0.2 1,536,549 + +1.2 1,536,550 - +0.6 1,536,687 + +0.8 1,536,702 - +0.2 1,536,889 - MCAODC_24055 0.76 -0.5 1,537,030 + -0.6 1,537,161 - MCAODC_24060 0.11 -0.6
Or see this region's nucleotide sequence