Strain Fitness in Escherichia coli ECRC101 around MCAODC_22440

Experiment: WM_TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_22420 and MCAODC_22425 are separated by 5 nucleotidesMCAODC_22425 and MCAODC_22430 overlap by 8 nucleotidesMCAODC_22430 and MCAODC_22435 overlap by 11 nucleotidesMCAODC_22435 and MCAODC_22440 overlap by 8 nucleotidesMCAODC_22440 and MCAODC_22445 are separated by 610 nucleotides MCAODC_22420: MCAODC_22420 - DUF4222 domain-containing protein, at 1,244,421 to 1,244,720 _22420 MCAODC_22425: MCAODC_22425 - hypothetical protein, at 1,244,726 to 1,244,959 _22425 MCAODC_22430: MCAODC_22430 - Putative prophage protein, at 1,244,952 to 1,245,416 _22430 MCAODC_22435: MCAODC_22435 - hypothetical protein, at 1,245,406 to 1,245,618 _22435 MCAODC_22440: MCAODC_22440 - host cell division inhibitor Icd-like protein, at 1,245,611 to 1,246,555 _22440 MCAODC_22445: MCAODC_22445 - integrase, at 1,247,166 to 1,248,395 _22445 Position (kb) 1245 1246 1247Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1244.619 kb on - strand, within MCAODC_22420at 1244.987 kb on + strandat 1245.168 kb on - strand, within MCAODC_22430at 1245.219 kb on - strand, within MCAODC_22430at 1245.320 kb on + strand, within MCAODC_22430at 1245.320 kb on + strand, within MCAODC_22430at 1245.321 kb on - strand, within MCAODC_22430at 1245.321 kb on - strand, within MCAODC_22430at 1245.321 kb on - strand, within MCAODC_22430at 1245.321 kb on - strand, within MCAODC_22430at 1245.417 kb on - strandat 1245.441 kb on + strand, within MCAODC_22435at 1245.554 kb on - strand, within MCAODC_22435at 1245.592 kb on - strand, within MCAODC_22435at 1245.613 kb on - strandat 1245.776 kb on + strand, within MCAODC_22440at 1245.776 kb on + strand, within MCAODC_22440at 1245.788 kb on + strand, within MCAODC_22440at 1245.788 kb on + strand, within MCAODC_22440at 1245.788 kb on + strand, within MCAODC_22440at 1245.788 kb on + strand, within MCAODC_22440at 1245.788 kb on + strand, within MCAODC_22440at 1245.789 kb on - strand, within MCAODC_22440at 1245.789 kb on - strand, within MCAODC_22440at 1245.818 kb on + strand, within MCAODC_22440at 1245.818 kb on + strand, within MCAODC_22440at 1245.818 kb on + strand, within MCAODC_22440at 1245.819 kb on - strand, within MCAODC_22440at 1245.823 kb on + strand, within MCAODC_22440at 1245.823 kb on + strand, within MCAODC_22440at 1245.823 kb on + strand, within MCAODC_22440at 1245.823 kb on + strand, within MCAODC_22440at 1245.824 kb on - strand, within MCAODC_22440at 1245.846 kb on + strand, within MCAODC_22440at 1245.883 kb on + strand, within MCAODC_22440at 1245.883 kb on + strand, within MCAODC_22440at 1245.884 kb on - strand, within MCAODC_22440at 1246.009 kb on + strand, within MCAODC_22440at 1246.009 kb on + strand, within MCAODC_22440at 1246.009 kb on + strand, within MCAODC_22440at 1246.009 kb on + strand, within MCAODC_22440at 1246.096 kb on + strand, within MCAODC_22440at 1246.096 kb on + strand, within MCAODC_22440at 1246.117 kb on + strand, within MCAODC_22440at 1246.139 kb on - strand, within MCAODC_22440at 1246.139 kb on - strand, within MCAODC_22440at 1246.155 kb on - strand, within MCAODC_22440at 1246.344 kb on + strand, within MCAODC_22440at 1246.387 kb on + strand, within MCAODC_22440at 1246.387 kb on + strand, within MCAODC_22440at 1246.401 kb on + strand, within MCAODC_22440at 1246.403 kb on + strand, within MCAODC_22440at 1246.403 kb on + strand, within MCAODC_22440at 1246.403 kb on + strand, within MCAODC_22440at 1246.403 kb on + strand, within MCAODC_22440at 1246.403 kb on + strand, within MCAODC_22440at 1246.403 kb on + strand, within MCAODC_22440at 1246.404 kb on - strand, within MCAODC_22440at 1246.409 kb on + strand, within MCAODC_22440at 1246.410 kb on - strand, within MCAODC_22440at 1246.410 kb on - strand, within MCAODC_22440at 1246.424 kb on + strand, within MCAODC_22440at 1246.540 kb on + strandat 1246.540 kb on + strandat 1246.541 kb on - strandat 1246.561 kb on + strandat 1246.561 kb on + strandat 1246.561 kb on + strandat 1246.561 kb on + strandat 1246.562 kb on - strandat 1246.562 kb on - strandat 1246.615 kb on - strandat 1246.634 kb on - strandat 1246.691 kb on - strandat 1246.739 kb on - strandat 1246.739 kb on - strandat 1246.739 kb on - strandat 1246.779 kb on - strandat 1246.843 kb on - strandat 1246.843 kb on - strandat 1246.853 kb on - strandat 1247.082 kb on - strandat 1247.181 kb on + strandat 1247.243 kb on + strandat 1247.285 kb on + strandat 1247.285 kb on + strandat 1247.286 kb on - strandat 1247.287 kb on + strandat 1247.322 kb on - strand, within MCAODC_22445at 1247.544 kb on - strand, within MCAODC_22445

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP9
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1,244,619 - MCAODC_22420 0.66 -0.1
1,244,987 + +1.5
1,245,168 - MCAODC_22430 0.46 -1.1
1,245,219 - MCAODC_22430 0.57 +0.5
1,245,320 + MCAODC_22430 0.79 -0.1
1,245,320 + MCAODC_22430 0.79 -0.1
1,245,321 - MCAODC_22430 0.79 +0.1
1,245,321 - MCAODC_22430 0.79 -0.0
1,245,321 - MCAODC_22430 0.79 +0.3
1,245,321 - MCAODC_22430 0.79 -0.3
1,245,417 - -1.7
1,245,441 + MCAODC_22435 0.16 -0.4
1,245,554 - MCAODC_22435 0.69 +1.8
1,245,592 - MCAODC_22435 0.87 +2.9
1,245,613 - +0.3
1,245,776 + MCAODC_22440 0.17 +0.3
1,245,776 + MCAODC_22440 0.17 +0.5
1,245,788 + MCAODC_22440 0.19 -1.5
1,245,788 + MCAODC_22440 0.19 +0.0
1,245,788 + MCAODC_22440 0.19 -0.6
1,245,788 + MCAODC_22440 0.19 -0.5
1,245,788 + MCAODC_22440 0.19 -0.9
1,245,789 - MCAODC_22440 0.19 +1.9
1,245,789 - MCAODC_22440 0.19 +1.5
1,245,818 + MCAODC_22440 0.22 -1.8
1,245,818 + MCAODC_22440 0.22 +1.7
1,245,818 + MCAODC_22440 0.22 +0.5
1,245,819 - MCAODC_22440 0.22 +1.5
1,245,823 + MCAODC_22440 0.22 +0.1
1,245,823 + MCAODC_22440 0.22 +0.5
1,245,823 + MCAODC_22440 0.22 +0.2
1,245,823 + MCAODC_22440 0.22 -0.3
1,245,824 - MCAODC_22440 0.23 -1.7
1,245,846 + MCAODC_22440 0.25 -0.7
1,245,883 + MCAODC_22440 0.29 -1.9
1,245,883 + MCAODC_22440 0.29 +0.7
1,245,884 - MCAODC_22440 0.29 -0.2
1,246,009 + MCAODC_22440 0.42 +0.5
1,246,009 + MCAODC_22440 0.42 -0.8
1,246,009 + MCAODC_22440 0.42 +0.7
1,246,009 + MCAODC_22440 0.42 -0.5
1,246,096 + MCAODC_22440 0.51 -0.3
1,246,096 + MCAODC_22440 0.51 +0.1
1,246,117 + MCAODC_22440 0.54 +0.1
1,246,139 - MCAODC_22440 0.56 +1.4
1,246,139 - MCAODC_22440 0.56 -0.5
1,246,155 - MCAODC_22440 0.58 +0.9
1,246,344 + MCAODC_22440 0.78 +0.4
1,246,387 + MCAODC_22440 0.82 +0.6
1,246,387 + MCAODC_22440 0.82 +1.1
1,246,401 + MCAODC_22440 0.84 +0.7
1,246,403 + MCAODC_22440 0.84 +1.9
1,246,403 + MCAODC_22440 0.84 +0.9
1,246,403 + MCAODC_22440 0.84 +0.2
1,246,403 + MCAODC_22440 0.84 +0.4
1,246,403 + MCAODC_22440 0.84 +1.1
1,246,403 + MCAODC_22440 0.84 -0.7
1,246,404 - MCAODC_22440 0.84 -0.3
1,246,409 + MCAODC_22440 0.84 -0.9
1,246,410 - MCAODC_22440 0.85 +0.6
1,246,410 - MCAODC_22440 0.85 -0.3
1,246,424 + MCAODC_22440 0.86 +0.1
1,246,540 + -0.6
1,246,540 + +0.3
1,246,541 - +1.7
1,246,561 + +0.3
1,246,561 + +0.9
1,246,561 + +1.4
1,246,561 + -0.4
1,246,562 - -0.2
1,246,562 - -0.3
1,246,615 - -0.2
1,246,634 - +0.1
1,246,691 - +2.8
1,246,739 - -1.8
1,246,739 - +0.3
1,246,739 - +1.9
1,246,779 - -0.6
1,246,843 - +0.0
1,246,843 - +0.3
1,246,853 - -0.2
1,247,082 - -2.5
1,247,181 + -1.2
1,247,243 + +2.0
1,247,285 + -0.7
1,247,285 + -0.7
1,247,286 - -0.1
1,247,287 + -0.1
1,247,322 - MCAODC_22445 0.13 -0.9
1,247,544 - MCAODC_22445 0.31 -0.4

Or see this region's nucleotide sequence