Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt wzc and wzb are separated by 2 nucleotides wzb and wza are separated by 5 nucleotides wza and tlyC are separated by 658 nucleotides
MCAODC_20630: wzc - tyrosine-protein kinase Wzc, at 936,755 to 938,917
wzc
MCAODC_20635: wzb - low molecular weight protein-tyrosine-phosphatase Wzb, at 938,920 to 939,363
wzb
MCAODC_20640: wza - polysaccharide export protein Wza, at 939,369 to 940,508
wza
MCAODC_20645: tlyC - Integral membrane protein TerC family, at 941,167 to 942,750
tlyC
Position (kb) 939
940
941 Strain fitness (log2 ratio) -2
-1
0
1
2 at 938.703 kb on - strand at 938.751 kb on + strand at 938.776 kb on - strand at 938.904 kb on - strand at 938.921 kb on + strand at 938.921 kb on + strand at 938.922 kb on - strand at 938.924 kb on - strand at 938.982 kb on - strand, within wzb at 938.982 kb on - strand, within wzb at 939.094 kb on + strand, within wzb at 939.105 kb on + strand, within wzb at 939.137 kb on + strand, within wzb at 939.327 kb on + strand at 939.346 kb on + strand at 939.423 kb on - strand at 939.481 kb on + strand at 939.481 kb on + strand at 939.482 kb on - strand at 939.482 kb on - strand at 939.482 kb on - strand at 939.482 kb on - strand at 939.482 kb on - strand at 939.482 kb on - strand at 939.493 kb on + strand, within wza at 939.493 kb on + strand, within wza at 939.560 kb on + strand, within wza at 939.756 kb on - strand, within wza at 939.766 kb on + strand, within wza at 939.767 kb on - strand, within wza at 939.773 kb on + strand, within wza at 939.785 kb on - strand, within wza at 939.939 kb on + strand, within wza at 939.940 kb on - strand, within wza at 939.986 kb on + strand, within wza at 939.987 kb on - strand, within wza at 939.988 kb on + strand, within wza at 939.989 kb on - strand, within wza at 939.989 kb on - strand, within wza at 940.019 kb on + strand, within wza at 940.045 kb on + strand, within wza at 940.046 kb on - strand, within wza at 940.102 kb on - strand, within wza at 940.120 kb on + strand, within wza at 940.120 kb on + strand, within wza at 940.121 kb on - strand, within wza at 940.134 kb on - strand, within wza at 940.134 kb on - strand, within wza at 940.149 kb on + strand, within wza at 940.425 kb on - strand at 940.806 kb on - strand at 941.112 kb on + strand at 941.150 kb on + strand at 941.159 kb on + strand at 941.163 kb on + strand at 941.163 kb on + strand at 941.163 kb on + strand at 941.163 kb on + strand at 941.164 kb on - strand at 941.166 kb on + strand at 941.166 kb on + strand at 941.166 kb on + strand at 941.256 kb on + strand at 941.256 kb on + strand at 941.345 kb on + strand, within tlyC at 941.429 kb on + strand, within tlyC at 941.429 kb on + strand, within tlyC at 941.429 kb on + strand, within tlyC
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 938,703 - -0.6 938,751 + -1.4 938,776 - +0.5 938,904 - -0.6 938,921 + -0.8 938,921 + +0.2 938,922 - +0.7 938,924 - +0.9 938,982 - wzb MCAODC_20635 0.14 -0.2 938,982 - wzb MCAODC_20635 0.14 +0.9 939,094 + wzb MCAODC_20635 0.39 +1.1 939,105 + wzb MCAODC_20635 0.42 +0.7 939,137 + wzb MCAODC_20635 0.49 -0.1 939,327 + -2.0 939,346 + +0.0 939,423 - +0.3 939,481 + +0.4 939,481 + +0.4 939,482 - -0.3 939,482 - +1.0 939,482 - +0.8 939,482 - -0.7 939,482 - +1.4 939,482 - +0.0 939,493 + wza MCAODC_20640 0.11 -2.0 939,493 + wza MCAODC_20640 0.11 -0.2 939,560 + wza MCAODC_20640 0.17 -1.5 939,756 - wza MCAODC_20640 0.34 +0.4 939,766 + wza MCAODC_20640 0.35 -0.3 939,767 - wza MCAODC_20640 0.35 -2.1 939,773 + wza MCAODC_20640 0.35 -1.0 939,785 - wza MCAODC_20640 0.36 -0.2 939,939 + wza MCAODC_20640 0.50 +2.2 939,940 - wza MCAODC_20640 0.50 -1.2 939,986 + wza MCAODC_20640 0.54 -1.2 939,987 - wza MCAODC_20640 0.54 +1.5 939,988 + wza MCAODC_20640 0.54 -1.3 939,989 - wza MCAODC_20640 0.54 +0.5 939,989 - wza MCAODC_20640 0.54 -0.9 940,019 + wza MCAODC_20640 0.57 -0.7 940,045 + wza MCAODC_20640 0.59 +0.7 940,046 - wza MCAODC_20640 0.59 +0.5 940,102 - wza MCAODC_20640 0.64 -0.8 940,120 + wza MCAODC_20640 0.66 -0.4 940,120 + wza MCAODC_20640 0.66 -0.6 940,121 - wza MCAODC_20640 0.66 -0.5 940,134 - wza MCAODC_20640 0.67 +0.8 940,134 - wza MCAODC_20640 0.67 -1.2 940,149 + wza MCAODC_20640 0.68 -0.0 940,425 - +1.5 940,806 - -0.7 941,112 + -0.1 941,150 + +0.2 941,159 + +0.5 941,163 + -0.6 941,163 + -0.9 941,163 + -0.2 941,163 + -2.0 941,164 - -0.3 941,166 + +0.4 941,166 + +0.4 941,166 + +1.5 941,256 + -0.2 941,256 + +0.8 941,345 + tlyC MCAODC_20645 0.11 +1.3 941,429 + tlyC MCAODC_20645 0.17 +0.9 941,429 + tlyC MCAODC_20645 0.17 +0.3 941,429 + tlyC MCAODC_20645 0.17 -0.7
Or see this region's nucleotide sequence