Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliO and fliP overlap by 1 nucleotides fliP and fliQ are separated by 9 nucleotides fliQ and fliR are separated by 7 nucleotides
MCAODC_19725: fliO - flagellar type III secretion system protein FliO, at 775,259 to 775,624
fliO
MCAODC_19730: fliP - flagellar type III secretion system pore protein FliP, at 775,624 to 776,361
fliP
MCAODC_19735: fliQ - flagellar biosynthesis protein FliQ, at 776,371 to 776,640
fliQ
MCAODC_19740: fliR - flagellar type III secretion system protein FliR, at 776,648 to 777,433
fliR
Position (kb) 776
777 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 775.603 kb on + strand at 775.603 kb on + strand at 775.668 kb on + strand at 775.879 kb on - strand, within fliP at 775.879 kb on - strand, within fliP at 775.920 kb on + strand, within fliP at 775.923 kb on + strand, within fliP at 775.986 kb on - strand, within fliP at 776.222 kb on + strand, within fliP at 776.353 kb on + strand at 776.359 kb on + strand at 776.557 kb on - strand, within fliQ at 776.627 kb on - strand at 776.627 kb on - strand at 776.629 kb on - strand at 776.644 kb on + strand at 776.645 kb on - strand at 776.647 kb on + strand at 776.647 kb on + strand at 776.647 kb on + strand at 776.647 kb on + strand at 776.647 kb on + strand at 776.648 kb on - strand at 776.648 kb on - strand at 776.648 kb on - strand at 776.648 kb on - strand at 776.648 kb on - strand at 776.648 kb on - strand at 776.694 kb on - strand at 776.821 kb on - strand, within fliR at 776.821 kb on - strand, within fliR at 777.007 kb on + strand, within fliR at 777.007 kb on + strand, within fliR at 777.007 kb on + strand, within fliR at 777.008 kb on - strand, within fliR at 777.008 kb on - strand, within fliR at 777.008 kb on - strand, within fliR at 777.008 kb on - strand, within fliR at 777.011 kb on - strand, within fliR at 777.038 kb on - strand, within fliR at 777.038 kb on - strand, within fliR at 777.038 kb on - strand, within fliR at 777.068 kb on - strand, within fliR at 777.078 kb on + strand, within fliR at 777.250 kb on - strand, within fliR at 777.256 kb on - strand, within fliR at 777.605 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 775,603 + +0.6 775,603 + +0.7 775,668 + -2.8 775,879 - fliP MCAODC_19730 0.35 +1.1 775,879 - fliP MCAODC_19730 0.35 +0.3 775,920 + fliP MCAODC_19730 0.40 +0.0 775,923 + fliP MCAODC_19730 0.41 -0.8 775,986 - fliP MCAODC_19730 0.49 -0.6 776,222 + fliP MCAODC_19730 0.81 +1.3 776,353 + +0.8 776,359 + -0.8 776,557 - fliQ MCAODC_19735 0.69 -2.1 776,627 - -1.3 776,627 - +0.9 776,629 - -1.2 776,644 + +0.6 776,645 - +1.5 776,647 + -0.1 776,647 + +1.1 776,647 + +0.5 776,647 + +1.2 776,647 + +0.1 776,648 - -2.1 776,648 - +1.0 776,648 - +0.2 776,648 - +0.3 776,648 - +1.1 776,648 - -0.2 776,694 - -1.6 776,821 - fliR MCAODC_19740 0.22 -0.1 776,821 - fliR MCAODC_19740 0.22 -0.8 777,007 + fliR MCAODC_19740 0.46 +0.7 777,007 + fliR MCAODC_19740 0.46 -0.0 777,007 + fliR MCAODC_19740 0.46 -1.7 777,008 - fliR MCAODC_19740 0.46 +1.4 777,008 - fliR MCAODC_19740 0.46 +0.3 777,008 - fliR MCAODC_19740 0.46 +0.5 777,008 - fliR MCAODC_19740 0.46 +0.0 777,011 - fliR MCAODC_19740 0.46 -0.2 777,038 - fliR MCAODC_19740 0.50 +0.1 777,038 - fliR MCAODC_19740 0.50 -1.2 777,038 - fliR MCAODC_19740 0.50 +1.4 777,068 - fliR MCAODC_19740 0.53 +0.7 777,078 + fliR MCAODC_19740 0.55 +0.1 777,250 - fliR MCAODC_19740 0.77 +0.5 777,256 - fliR MCAODC_19740 0.77 -0.3 777,605 + +0.2
Or see this region's nucleotide sequence