Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tcyJ and fliZ are separated by 30 nucleotides fliZ and fliA are separated by 45 nucleotides fliA and flgL are separated by 319 nucleotides
MCAODC_19600: tcyJ - cystine ABC transporter substrate-binding protein, at 751,126 to 751,983
tcyJ
MCAODC_19605: fliZ - flagella biosynthesis regulatory protein FliZ, at 752,014 to 752,565
fliZ
MCAODC_19610: fliA - RNA polymerase sigma factor FliA, at 752,611 to 753,330
fliA
MCAODC_19615: flgL - flagellin FliC, at 753,650 to 755,407
flgL
Position (kb) 752
753
754 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 751.612 kb on - strand, within tcyJ at 751.626 kb on + strand, within tcyJ at 751.627 kb on - strand, within tcyJ at 751.633 kb on - strand, within tcyJ at 751.654 kb on - strand, within tcyJ at 751.780 kb on - strand, within tcyJ at 751.946 kb on - strand at 751.963 kb on - strand at 751.963 kb on - strand at 751.963 kb on - strand at 751.963 kb on - strand at 752.006 kb on - strand at 752.011 kb on + strand at 752.016 kb on - strand at 752.016 kb on - strand at 752.018 kb on + strand at 752.018 kb on + strand at 752.019 kb on - strand at 752.020 kb on + strand at 752.021 kb on - strand at 752.021 kb on - strand at 752.022 kb on + strand at 752.022 kb on + strand at 752.023 kb on - strand at 752.082 kb on - strand, within fliZ at 752.090 kb on + strand, within fliZ at 752.204 kb on - strand, within fliZ at 752.237 kb on + strand, within fliZ at 752.238 kb on - strand, within fliZ at 752.238 kb on - strand, within fliZ at 752.250 kb on + strand, within fliZ at 752.250 kb on + strand, within fliZ at 752.290 kb on - strand, within fliZ at 752.333 kb on - strand, within fliZ at 752.460 kb on + strand, within fliZ at 752.520 kb on + strand at 752.521 kb on - strand at 752.566 kb on + strand at 752.566 kb on + strand at 752.613 kb on - strand at 752.613 kb on - strand at 752.613 kb on - strand at 752.615 kb on - strand at 752.660 kb on - strand at 752.660 kb on - strand at 752.660 kb on - strand at 752.660 kb on - strand at 752.660 kb on - strand at 752.733 kb on - strand, within fliA at 752.744 kb on - strand, within fliA at 752.802 kb on + strand, within fliA at 752.812 kb on + strand, within fliA at 752.813 kb on - strand, within fliA at 752.813 kb on - strand, within fliA at 752.813 kb on - strand, within fliA at 752.813 kb on - strand, within fliA at 752.813 kb on - strand, within fliA at 752.821 kb on + strand, within fliA at 753.122 kb on + strand, within fliA at 753.122 kb on + strand, within fliA at 753.123 kb on - strand, within fliA at 753.123 kb on - strand, within fliA at 753.130 kb on - strand, within fliA at 753.146 kb on - strand, within fliA at 753.155 kb on + strand, within fliA at 753.156 kb on - strand, within fliA at 753.171 kb on + strand, within fliA at 753.171 kb on + strand, within fliA at 753.172 kb on - strand, within fliA at 753.176 kb on - strand, within fliA at 753.176 kb on - strand, within fliA at 753.272 kb on + strand at 753.273 kb on - strand at 753.273 kb on - strand at 753.301 kb on + strand at 753.302 kb on - strand at 753.316 kb on - strand at 753.318 kb on - strand at 753.318 kb on - strand at 753.318 kb on - strand at 753.348 kb on + strand at 753.348 kb on + strand at 753.349 kb on - strand at 753.350 kb on + strand at 753.351 kb on - strand at 753.422 kb on + strand at 753.503 kb on - strand at 753.503 kb on - strand at 753.561 kb on - strand at 753.579 kb on + strand at 753.580 kb on - strand at 753.634 kb on - strand at 753.634 kb on - strand at 753.651 kb on + strand at 753.692 kb on - strand at 753.692 kb on - strand at 753.808 kb on + strand at 753.809 kb on - strand at 753.947 kb on - strand, within flgL at 753.991 kb on + strand, within flgL at 754.022 kb on - strand, within flgL at 754.073 kb on - strand, within flgL at 754.090 kb on + strand, within flgL at 754.091 kb on - strand, within flgL at 754.091 kb on - strand, within flgL at 754.112 kb on - strand, within flgL at 754.121 kb on - strand, within flgL at 754.131 kb on + strand, within flgL at 754.132 kb on - strand, within flgL at 754.132 kb on - strand, within flgL at 754.174 kb on + strand, within flgL at 754.174 kb on + strand, within flgL at 754.175 kb on - strand, within flgL at 754.188 kb on - strand, within flgL at 754.199 kb on - strand, within flgL at 754.205 kb on - strand, within flgL at 754.245 kb on - strand, within flgL at 754.265 kb on - strand, within flgL at 754.272 kb on + strand, within flgL at 754.276 kb on + strand, within flgL at 754.276 kb on + strand, within flgL at 754.302 kb on - strand, within flgL at 754.302 kb on - strand, within flgL
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 751,612 - tcyJ MCAODC_19600 0.57 +0.1 751,626 + tcyJ MCAODC_19600 0.58 +0.8 751,627 - tcyJ MCAODC_19600 0.58 +0.5 751,633 - tcyJ MCAODC_19600 0.59 -0.4 751,654 - tcyJ MCAODC_19600 0.62 -1.0 751,780 - tcyJ MCAODC_19600 0.76 -0.7 751,946 - -0.3 751,963 - +0.5 751,963 - +0.9 751,963 - -0.5 751,963 - +0.8 752,006 - +0.7 752,011 + +0.7 752,016 - +0.6 752,016 - -0.0 752,018 + -1.0 752,018 + -2.4 752,019 - -0.8 752,020 + -0.0 752,021 - +0.3 752,021 - +1.1 752,022 + +1.5 752,022 + +0.4 752,023 - -1.2 752,082 - fliZ MCAODC_19605 0.12 -1.1 752,090 + fliZ MCAODC_19605 0.14 -1.0 752,204 - fliZ MCAODC_19605 0.34 +0.5 752,237 + fliZ MCAODC_19605 0.40 +0.1 752,238 - fliZ MCAODC_19605 0.41 +0.4 752,238 - fliZ MCAODC_19605 0.41 -0.4 752,250 + fliZ MCAODC_19605 0.43 -0.8 752,250 + fliZ MCAODC_19605 0.43 +0.8 752,290 - fliZ MCAODC_19605 0.50 -0.5 752,333 - fliZ MCAODC_19605 0.58 +0.8 752,460 + fliZ MCAODC_19605 0.81 +1.5 752,520 + -1.7 752,521 - +0.0 752,566 + -0.1 752,566 + +0.4 752,613 - -0.2 752,613 - +0.5 752,613 - -0.9 752,615 - +0.4 752,660 - +0.3 752,660 - +0.0 752,660 - +1.2 752,660 - +0.6 752,660 - -0.7 752,733 - fliA MCAODC_19610 0.17 -0.5 752,744 - fliA MCAODC_19610 0.18 +0.4 752,802 + fliA MCAODC_19610 0.27 +0.2 752,812 + fliA MCAODC_19610 0.28 +0.2 752,813 - fliA MCAODC_19610 0.28 +0.2 752,813 - fliA MCAODC_19610 0.28 +0.4 752,813 - fliA MCAODC_19610 0.28 +0.2 752,813 - fliA MCAODC_19610 0.28 +0.2 752,813 - fliA MCAODC_19610 0.28 +0.0 752,821 + fliA MCAODC_19610 0.29 +0.6 753,122 + fliA MCAODC_19610 0.71 +1.6 753,122 + fliA MCAODC_19610 0.71 -0.2 753,123 - fliA MCAODC_19610 0.71 -0.4 753,123 - fliA MCAODC_19610 0.71 -0.4 753,130 - fliA MCAODC_19610 0.72 -1.4 753,146 - fliA MCAODC_19610 0.74 +1.4 753,155 + fliA MCAODC_19610 0.76 -1.3 753,156 - fliA MCAODC_19610 0.76 +0.5 753,171 + fliA MCAODC_19610 0.78 +0.7 753,171 + fliA MCAODC_19610 0.78 +0.2 753,172 - fliA MCAODC_19610 0.78 +0.2 753,176 - fliA MCAODC_19610 0.78 +0.5 753,176 - fliA MCAODC_19610 0.78 -0.1 753,272 + +0.1 753,273 - +0.2 753,273 - -0.3 753,301 + +1.3 753,302 - +0.6 753,316 - +1.0 753,318 - -0.0 753,318 - +1.2 753,318 - +1.2 753,348 + +0.4 753,348 + +0.9 753,349 - +0.6 753,350 + -2.0 753,351 - -0.2 753,422 + +0.8 753,503 - -0.5 753,503 - +0.2 753,561 - +0.9 753,579 + -0.4 753,580 - -2.4 753,634 - +0.3 753,634 - -3.0 753,651 + -1.9 753,692 - -0.2 753,692 - +0.1 753,808 + +0.5 753,809 - +0.2 753,947 - flgL MCAODC_19615 0.17 +0.5 753,991 + flgL MCAODC_19615 0.19 -1.3 754,022 - flgL MCAODC_19615 0.21 +1.1 754,073 - flgL MCAODC_19615 0.24 -1.1 754,090 + flgL MCAODC_19615 0.25 -0.1 754,091 - flgL MCAODC_19615 0.25 +0.1 754,091 - flgL MCAODC_19615 0.25 +1.0 754,112 - flgL MCAODC_19615 0.26 -1.3 754,121 - flgL MCAODC_19615 0.27 +0.6 754,131 + flgL MCAODC_19615 0.27 +0.4 754,132 - flgL MCAODC_19615 0.27 +1.2 754,132 - flgL MCAODC_19615 0.27 -2.2 754,174 + flgL MCAODC_19615 0.30 +0.3 754,174 + flgL MCAODC_19615 0.30 +1.7 754,175 - flgL MCAODC_19615 0.30 +0.2 754,188 - flgL MCAODC_19615 0.31 +0.3 754,199 - flgL MCAODC_19615 0.31 -1.8 754,205 - flgL MCAODC_19615 0.32 -0.2 754,245 - flgL MCAODC_19615 0.34 +0.0 754,265 - flgL MCAODC_19615 0.35 -0.2 754,272 + flgL MCAODC_19615 0.35 +0.7 754,276 + flgL MCAODC_19615 0.36 -0.3 754,276 + flgL MCAODC_19615 0.36 -1.2 754,302 - flgL MCAODC_19615 0.37 -0.5 754,302 - flgL MCAODC_19615 0.37 +0.0
Or see this region's nucleotide sequence