Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_18890 and MCAODC_18895 are separated by 310 nucleotides MCAODC_18895 and mntP overlap by 4 nucleotides mntP and rlmA overlap by 4 nucleotides rlmA and cspE are separated by 165 nucleotides
MCAODC_18890: MCAODC_18890 - UPF0266 membrane protein YobD, at 635,898 to 636,356
_18890
MCAODC_18895: MCAODC_18895 - Membrane protein, at 636,667 to 636,789
_18895
MCAODC_18900: mntP - manganese efflux pump MntP, at 636,786 to 637,352
mntP
MCAODC_18905: rlmA - 23S rRNA (guanine(745)-N(1))-methyltransferase, at 637,349 to 638,158
rlmA
MCAODC_18910: cspE - transcription antiterminator/RNA stability regulator CspE, at 638,324 to 638,533
cspE
Position (kb) 637
638
639 Strain fitness (log2 ratio) -2
-1
0
1
2 at 636.572 kb on + strand at 636.610 kb on + strand at 636.633 kb on + strand at 636.666 kb on + strand at 636.727 kb on + strand, within MCAODC_18895 at 636.727 kb on + strand, within MCAODC_18895 at 636.727 kb on + strand, within MCAODC_18895 at 636.727 kb on + strand, within MCAODC_18895 at 636.727 kb on + strand, within MCAODC_18895 at 636.727 kb on + strand, within MCAODC_18895 at 636.727 kb on + strand, within MCAODC_18895 at 636.727 kb on + strand, within MCAODC_18895 at 636.759 kb on + strand, within MCAODC_18895 at 636.759 kb on + strand, within MCAODC_18895 at 636.759 kb on + strand, within MCAODC_18895 at 636.801 kb on - strand at 637.040 kb on + strand, within mntP at 637.184 kb on + strand, within mntP at 637.223 kb on + strand, within mntP at 637.223 kb on + strand, within mntP at 637.354 kb on - strand at 637.378 kb on + strand at 637.419 kb on - strand at 637.693 kb on - strand, within rlmA at 637.697 kb on - strand, within rlmA at 637.701 kb on - strand, within rlmA at 637.715 kb on - strand, within rlmA at 637.973 kb on + strand, within rlmA at 638.101 kb on + strand at 638.101 kb on + strand at 638.102 kb on - strand at 638.102 kb on - strand at 638.103 kb on + strand at 638.103 kb on + strand at 638.103 kb on + strand at 638.103 kb on + strand at 638.104 kb on - strand at 638.104 kb on - strand at 638.296 kb on + strand at 638.330 kb on - strand at 638.330 kb on - strand at 638.442 kb on - strand, within cspE at 638.442 kb on - strand, within cspE at 638.473 kb on + strand, within cspE at 638.509 kb on + strand, within cspE at 638.510 kb on - strand, within cspE at 638.574 kb on - strand at 638.574 kb on - strand at 638.574 kb on - strand at 638.579 kb on - strand at 638.616 kb on + strand at 638.617 kb on - strand at 638.733 kb on - strand at 638.733 kb on - strand at 638.733 kb on - strand at 638.740 kb on + strand at 638.819 kb on + strand at 638.820 kb on - strand at 638.820 kb on - strand at 638.842 kb on - strand at 638.877 kb on - strand at 638.902 kb on + strand at 638.951 kb on - strand at 638.963 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 636,572 + +0.7 636,610 + -0.1 636,633 + +0.5 636,666 + -0.3 636,727 + MCAODC_18895 0.49 +0.2 636,727 + MCAODC_18895 0.49 +0.2 636,727 + MCAODC_18895 0.49 -0.5 636,727 + MCAODC_18895 0.49 -0.5 636,727 + MCAODC_18895 0.49 -1.5 636,727 + MCAODC_18895 0.49 -2.2 636,727 + MCAODC_18895 0.49 -0.0 636,727 + MCAODC_18895 0.49 +0.5 636,759 + MCAODC_18895 0.75 -0.0 636,759 + MCAODC_18895 0.75 +0.4 636,759 + MCAODC_18895 0.75 +0.7 636,801 - -0.9 637,040 + mntP MCAODC_18900 0.45 +0.7 637,184 + mntP MCAODC_18900 0.70 +0.4 637,223 + mntP MCAODC_18900 0.77 +0.3 637,223 + mntP MCAODC_18900 0.77 -0.3 637,354 - +1.3 637,378 + -0.2 637,419 - +1.1 637,693 - rlmA MCAODC_18905 0.42 +0.2 637,697 - rlmA MCAODC_18905 0.43 +0.6 637,701 - rlmA MCAODC_18905 0.43 -0.0 637,715 - rlmA MCAODC_18905 0.45 +1.2 637,973 + rlmA MCAODC_18905 0.77 -0.1 638,101 + -0.2 638,101 + +0.5 638,102 - -0.2 638,102 - -0.3 638,103 + +0.6 638,103 + +0.4 638,103 + +0.0 638,103 + -0.5 638,104 - +0.7 638,104 - +0.4 638,296 + +0.4 638,330 - +0.2 638,330 - +0.1 638,442 - cspE MCAODC_18910 0.56 +0.2 638,442 - cspE MCAODC_18910 0.56 +1.1 638,473 + cspE MCAODC_18910 0.71 +0.5 638,509 + cspE MCAODC_18910 0.88 -0.5 638,510 - cspE MCAODC_18910 0.89 +0.7 638,574 - -0.1 638,574 - -0.9 638,574 - +1.8 638,579 - +0.7 638,616 + +0.8 638,617 - +0.5 638,733 - -0.0 638,733 - -0.6 638,733 - +0.2 638,740 + -0.6 638,819 + -0.6 638,820 - -0.5 638,820 - -1.6 638,842 - -1.3 638,877 - -0.4 638,902 + -0.0 638,951 - +0.7 638,963 - -0.1
Or see this region's nucleotide sequence