Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dgcJ and yeaK are separated by 42 nucleotides yeaK and yeaL are separated by 274 nucleotides yeaL and nimR overlap by 44 nucleotides
MCAODC_18715: dgcJ - diguanylate cyclase DgcJ, at 602,914 to 604,404
dgcJ
MCAODC_18720: yeaK - mischarged aminoacyl-tRNA deacylase, at 604,447 to 604,950
yeaK
MCAODC_18725: yeaL - UPF0756 membrane protein CKO_01811, at 605,225 to 605,671
yeaL
MCAODC_18730: nimR - DNA-binding transcriptional regulator NimR, at 605,628 to 606,446
nimR
Position (kb) 604
605 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 603.450 kb on + strand, within dgcJ at 603.509 kb on + strand, within dgcJ at 603.593 kb on - strand, within dgcJ at 603.608 kb on + strand, within dgcJ at 603.735 kb on + strand, within dgcJ at 603.736 kb on - strand, within dgcJ at 603.769 kb on + strand, within dgcJ at 603.948 kb on + strand, within dgcJ at 604.047 kb on + strand, within dgcJ at 604.079 kb on + strand, within dgcJ at 604.119 kb on + strand, within dgcJ at 604.127 kb on + strand, within dgcJ at 604.166 kb on - strand, within dgcJ at 604.309 kb on + strand at 604.309 kb on + strand at 604.335 kb on - strand at 604.369 kb on + strand at 604.369 kb on + strand at 604.369 kb on + strand at 604.369 kb on + strand at 604.370 kb on - strand at 604.548 kb on + strand, within yeaK at 604.549 kb on - strand, within yeaK at 604.610 kb on + strand, within yeaK at 604.634 kb on + strand, within yeaK at 604.701 kb on + strand, within yeaK at 604.702 kb on - strand, within yeaK at 604.952 kb on + strand at 604.952 kb on + strand at 604.952 kb on + strand at 605.055 kb on + strand at 605.056 kb on - strand at 605.185 kb on - strand at 605.376 kb on + strand, within yeaL at 605.630 kb on - strand at 605.670 kb on - strand at 605.670 kb on - strand at 605.684 kb on + strand at 605.685 kb on - strand at 605.724 kb on - strand, within nimR at 605.726 kb on + strand, within nimR at 605.727 kb on - strand, within nimR at 605.727 kb on - strand, within nimR at 605.750 kb on - strand, within nimR at 605.750 kb on - strand, within nimR
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 603,450 + dgcJ MCAODC_18715 0.36 -0.5 603,509 + dgcJ MCAODC_18715 0.40 -0.2 603,593 - dgcJ MCAODC_18715 0.46 +0.9 603,608 + dgcJ MCAODC_18715 0.47 +1.0 603,735 + dgcJ MCAODC_18715 0.55 -0.3 603,736 - dgcJ MCAODC_18715 0.55 -0.5 603,769 + dgcJ MCAODC_18715 0.57 -0.3 603,948 + dgcJ MCAODC_18715 0.69 +1.6 604,047 + dgcJ MCAODC_18715 0.76 +0.8 604,079 + dgcJ MCAODC_18715 0.78 +0.1 604,119 + dgcJ MCAODC_18715 0.81 -0.3 604,127 + dgcJ MCAODC_18715 0.81 +0.5 604,166 - dgcJ MCAODC_18715 0.84 +0.3 604,309 + -0.5 604,309 + -0.1 604,335 - -1.7 604,369 + +1.1 604,369 + -0.9 604,369 + +1.0 604,369 + -0.5 604,370 - +0.1 604,548 + yeaK MCAODC_18720 0.20 +0.6 604,549 - yeaK MCAODC_18720 0.20 -1.1 604,610 + yeaK MCAODC_18720 0.32 -0.2 604,634 + yeaK MCAODC_18720 0.37 -0.7 604,701 + yeaK MCAODC_18720 0.50 +0.2 604,702 - yeaK MCAODC_18720 0.51 +0.1 604,952 + -1.9 604,952 + +0.4 604,952 + +0.0 605,055 + +1.1 605,056 - +2.8 605,185 - +0.3 605,376 + yeaL MCAODC_18725 0.34 +1.0 605,630 - +0.5 605,670 - -0.5 605,670 - -1.1 605,684 + -0.9 605,685 - -1.4 605,724 - nimR MCAODC_18730 0.12 +1.7 605,726 + nimR MCAODC_18730 0.12 -0.1 605,727 - nimR MCAODC_18730 0.12 -0.9 605,727 - nimR MCAODC_18730 0.12 +0.8 605,750 - nimR MCAODC_18730 0.15 +0.3 605,750 - nimR MCAODC_18730 0.15 -0.5
Or see this region's nucleotide sequence