Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynjB and ynjC overlap by 28 nucleotides ynjC and ynjD overlap by 1 nucleotides ynjD and ynjE are separated by 66 nucleotides
MCAODC_18535: ynjB - ABC transporter substrate-binding protein, at 564,853 to 566,019
ynjB
MCAODC_18540: ynjC - Inner membrane ABC transporter permease protein YnjC, at 565,992 to 567,527
ynjC
MCAODC_18545: ynjD - Uncharacterized ABC transporter ATP-binding protein YnjD, at 567,527 to 568,180
ynjD
MCAODC_18550: ynjE - thiosulfate sulfurtransferase YnjE, at 568,247 to 569,554
ynjE
Position (kb) 565
566
567
568 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 564.997 kb on + strand, within ynjB at 565.039 kb on - strand, within ynjB at 565.040 kb on + strand, within ynjB at 565.041 kb on - strand, within ynjB at 565.172 kb on + strand, within ynjB at 565.228 kb on + strand, within ynjB at 565.401 kb on + strand, within ynjB at 565.484 kb on + strand, within ynjB at 565.485 kb on - strand, within ynjB at 565.540 kb on + strand, within ynjB at 565.561 kb on + strand, within ynjB at 565.561 kb on + strand, within ynjB at 565.561 kb on + strand, within ynjB at 565.562 kb on - strand, within ynjB at 565.654 kb on - strand, within ynjB at 565.709 kb on - strand, within ynjB at 565.974 kb on - strand at 566.052 kb on + strand at 566.252 kb on + strand, within ynjC at 566.344 kb on - strand, within ynjC at 566.349 kb on + strand, within ynjC at 566.452 kb on + strand, within ynjC at 566.473 kb on + strand, within ynjC at 566.633 kb on + strand, within ynjC at 566.654 kb on - strand, within ynjC at 566.767 kb on + strand, within ynjC at 566.767 kb on + strand, within ynjC at 566.768 kb on - strand, within ynjC at 566.774 kb on + strand, within ynjC at 566.790 kb on - strand, within ynjC at 566.790 kb on - strand, within ynjC at 566.814 kb on - strand, within ynjC at 566.990 kb on - strand, within ynjC at 567.034 kb on + strand, within ynjC at 567.082 kb on - strand, within ynjC at 567.280 kb on + strand, within ynjC at 567.280 kb on + strand, within ynjC at 567.323 kb on + strand, within ynjC at 567.323 kb on + strand, within ynjC at 567.333 kb on + strand, within ynjC at 567.333 kb on + strand, within ynjC at 567.334 kb on - strand, within ynjC at 567.334 kb on - strand, within ynjC at 567.451 kb on + strand at 567.452 kb on - strand at 567.452 kb on - strand at 567.454 kb on + strand at 567.499 kb on + strand at 567.500 kb on - strand at 567.504 kb on + strand at 567.504 kb on + strand at 567.504 kb on + strand at 567.552 kb on + strand at 567.697 kb on + strand, within ynjD at 567.697 kb on + strand, within ynjD at 567.708 kb on + strand, within ynjD at 567.708 kb on + strand, within ynjD at 567.786 kb on + strand, within ynjD at 567.787 kb on - strand, within ynjD at 567.859 kb on + strand, within ynjD at 567.860 kb on - strand, within ynjD at 567.993 kb on + strand, within ynjD at 568.126 kb on + strand at 568.126 kb on + strand at 568.288 kb on - strand at 568.374 kb on + strand at 568.400 kb on - strand, within ynjE at 568.419 kb on + strand, within ynjE at 568.453 kb on - strand, within ynjE at 568.465 kb on + strand, within ynjE at 568.519 kb on + strand, within ynjE at 568.519 kb on + strand, within ynjE at 568.519 kb on + strand, within ynjE at 568.520 kb on - strand, within ynjE
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 564,997 + ynjB MCAODC_18535 0.12 +0.7 565,039 - ynjB MCAODC_18535 0.16 +1.5 565,040 + ynjB MCAODC_18535 0.16 -2.0 565,041 - ynjB MCAODC_18535 0.16 -0.3 565,172 + ynjB MCAODC_18535 0.27 -0.2 565,228 + ynjB MCAODC_18535 0.32 -1.4 565,401 + ynjB MCAODC_18535 0.47 +0.9 565,484 + ynjB MCAODC_18535 0.54 +0.2 565,485 - ynjB MCAODC_18535 0.54 -0.5 565,540 + ynjB MCAODC_18535 0.59 -0.6 565,561 + ynjB MCAODC_18535 0.61 -0.3 565,561 + ynjB MCAODC_18535 0.61 -0.2 565,561 + ynjB MCAODC_18535 0.61 +0.6 565,562 - ynjB MCAODC_18535 0.61 -0.9 565,654 - ynjB MCAODC_18535 0.69 -0.2 565,709 - ynjB MCAODC_18535 0.73 -0.3 565,974 - -3.3 566,052 + +0.4 566,252 + ynjC MCAODC_18540 0.17 +0.5 566,344 - ynjC MCAODC_18540 0.23 -2.9 566,349 + ynjC MCAODC_18540 0.23 +0.0 566,452 + ynjC MCAODC_18540 0.30 -1.6 566,473 + ynjC MCAODC_18540 0.31 -0.1 566,633 + ynjC MCAODC_18540 0.42 -0.3 566,654 - ynjC MCAODC_18540 0.43 +2.5 566,767 + ynjC MCAODC_18540 0.50 +0.2 566,767 + ynjC MCAODC_18540 0.50 +1.2 566,768 - ynjC MCAODC_18540 0.51 -0.2 566,774 + ynjC MCAODC_18540 0.51 -1.2 566,790 - ynjC MCAODC_18540 0.52 +0.2 566,790 - ynjC MCAODC_18540 0.52 +0.5 566,814 - ynjC MCAODC_18540 0.54 -1.3 566,990 - ynjC MCAODC_18540 0.65 -0.1 567,034 + ynjC MCAODC_18540 0.68 +0.1 567,082 - ynjC MCAODC_18540 0.71 -0.3 567,280 + ynjC MCAODC_18540 0.84 -1.1 567,280 + ynjC MCAODC_18540 0.84 +0.2 567,323 + ynjC MCAODC_18540 0.87 +0.4 567,323 + ynjC MCAODC_18540 0.87 +0.5 567,333 + ynjC MCAODC_18540 0.87 +0.0 567,333 + ynjC MCAODC_18540 0.87 -0.3 567,334 - ynjC MCAODC_18540 0.87 -0.9 567,334 - ynjC MCAODC_18540 0.87 +0.1 567,451 + +0.5 567,452 - -0.4 567,452 - +0.1 567,454 + -2.6 567,499 + +0.0 567,500 - -1.5 567,504 + -0.2 567,504 + +3.8 567,504 + -1.0 567,552 + -1.1 567,697 + ynjD MCAODC_18545 0.26 -1.9 567,697 + ynjD MCAODC_18545 0.26 -0.1 567,708 + ynjD MCAODC_18545 0.28 -0.1 567,708 + ynjD MCAODC_18545 0.28 +0.6 567,786 + ynjD MCAODC_18545 0.40 +0.3 567,787 - ynjD MCAODC_18545 0.40 +0.6 567,859 + ynjD MCAODC_18545 0.51 +0.4 567,860 - ynjD MCAODC_18545 0.51 +0.3 567,993 + ynjD MCAODC_18545 0.71 +1.4 568,126 + -2.0 568,126 + +0.2 568,288 - -0.8 568,374 + -0.8 568,400 - ynjE MCAODC_18550 0.12 -0.9 568,419 + ynjE MCAODC_18550 0.13 +1.1 568,453 - ynjE MCAODC_18550 0.16 -3.2 568,465 + ynjE MCAODC_18550 0.17 -1.3 568,519 + ynjE MCAODC_18550 0.21 +1.0 568,519 + ynjE MCAODC_18550 0.21 -0.5 568,519 + ynjE MCAODC_18550 0.21 -1.5 568,520 - ynjE MCAODC_18550 0.21 -0.0
Or see this region's nucleotide sequence