Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dcp and ydfG are separated by 136 nucleotides ydfG and ydfH are separated by 88 nucleotides ydfH and ydfZ are separated by 176 nucleotides
MCAODC_16905: dcp - peptidyl-dipeptidase Dcp, at 288,804 to 290,849
dcp
MCAODC_16910: ydfG - bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG, at 290,986 to 291,732
ydfG
MCAODC_16915: ydfH - DNA-binding transcriptional regulator YdfH, at 291,821 to 292,507
ydfH
MCAODC_16920: ydfZ - Putative selenoprotein YdfZ, at 292,684 to 292,887
ydfZ
Position (kb) 290
291
292 Strain fitness (log2 ratio) -2
-1
0
1 at 290.030 kb on + strand, within dcp at 290.031 kb on - strand, within dcp at 290.531 kb on - strand, within dcp at 290.535 kb on - strand, within dcp at 290.535 kb on - strand, within dcp at 290.535 kb on - strand, within dcp at 290.535 kb on - strand, within dcp at 290.586 kb on + strand, within dcp at 290.601 kb on - strand, within dcp at 290.676 kb on - strand at 290.678 kb on + strand at 290.678 kb on + strand at 290.837 kb on + strand at 290.883 kb on + strand at 290.925 kb on - strand at 290.949 kb on - strand at 290.949 kb on - strand at 290.999 kb on + strand at 291.123 kb on + strand, within ydfG at 291.207 kb on + strand, within ydfG at 291.208 kb on - strand, within ydfG at 291.317 kb on + strand, within ydfG at 291.318 kb on - strand, within ydfG at 291.319 kb on + strand, within ydfG at 291.319 kb on + strand, within ydfG at 291.319 kb on + strand, within ydfG at 291.320 kb on - strand, within ydfG at 291.320 kb on - strand, within ydfG at 291.321 kb on + strand, within ydfG at 291.321 kb on + strand, within ydfG at 291.358 kb on - strand, within ydfG at 291.358 kb on - strand, within ydfG at 291.369 kb on + strand, within ydfG at 291.372 kb on + strand, within ydfG at 291.372 kb on + strand, within ydfG at 291.372 kb on + strand, within ydfG at 291.373 kb on - strand, within ydfG at 291.703 kb on + strand at 291.737 kb on + strand at 291.872 kb on + strand at 291.878 kb on - strand at 291.988 kb on + strand, within ydfH at 292.130 kb on - strand, within ydfH at 292.325 kb on - strand, within ydfH at 292.416 kb on + strand, within ydfH at 292.416 kb on + strand, within ydfH at 292.505 kb on + strand at 292.556 kb on - strand at 292.629 kb on + strand at 292.631 kb on + strand at 292.693 kb on + strand at 292.693 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 290,030 + dcp MCAODC_16905 0.60 -1.0 290,031 - dcp MCAODC_16905 0.60 +0.6 290,531 - dcp MCAODC_16905 0.84 -0.2 290,535 - dcp MCAODC_16905 0.85 -0.1 290,535 - dcp MCAODC_16905 0.85 +1.0 290,535 - dcp MCAODC_16905 0.85 +0.4 290,535 - dcp MCAODC_16905 0.85 -0.1 290,586 + dcp MCAODC_16905 0.87 +0.4 290,601 - dcp MCAODC_16905 0.88 +0.8 290,676 - -0.0 290,678 + +1.4 290,678 + -0.3 290,837 + +0.1 290,883 + -0.6 290,925 - +0.2 290,949 - -0.1 290,949 - +0.5 290,999 + +1.4 291,123 + ydfG MCAODC_16910 0.18 +1.0 291,207 + ydfG MCAODC_16910 0.30 +0.7 291,208 - ydfG MCAODC_16910 0.30 -1.3 291,317 + ydfG MCAODC_16910 0.44 -0.4 291,318 - ydfG MCAODC_16910 0.44 +0.5 291,319 + ydfG MCAODC_16910 0.45 +0.7 291,319 + ydfG MCAODC_16910 0.45 -0.6 291,319 + ydfG MCAODC_16910 0.45 +0.7 291,320 - ydfG MCAODC_16910 0.45 -0.7 291,320 - ydfG MCAODC_16910 0.45 +0.3 291,321 + ydfG MCAODC_16910 0.45 -0.9 291,321 + ydfG MCAODC_16910 0.45 -2.1 291,358 - ydfG MCAODC_16910 0.50 -1.8 291,358 - ydfG MCAODC_16910 0.50 +1.0 291,369 + ydfG MCAODC_16910 0.51 -0.1 291,372 + ydfG MCAODC_16910 0.52 +0.3 291,372 + ydfG MCAODC_16910 0.52 +1.4 291,372 + ydfG MCAODC_16910 0.52 -0.2 291,373 - ydfG MCAODC_16910 0.52 +0.2 291,703 + +1.0 291,737 + +0.9 291,872 + +1.2 291,878 - -0.6 291,988 + ydfH MCAODC_16915 0.24 -0.5 292,130 - ydfH MCAODC_16915 0.45 -0.5 292,325 - ydfH MCAODC_16915 0.73 +0.5 292,416 + ydfH MCAODC_16915 0.87 +0.4 292,416 + ydfH MCAODC_16915 0.87 +0.8 292,505 + +0.6 292,556 - -1.5 292,629 + +0.8 292,631 + +0.0 292,693 + +0.9 292,693 + +0.2
Or see this region's nucleotide sequence