Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt eamA and ydeE are separated by 194 nucleotides ydeE and pspE are separated by 40 nucleotides pspE and ftrA are separated by 94 nucleotides
MCAODC_16860: eamA - O-acetylserine/cysteine exporter, at 282,223 to 283,122
eamA
MCAODC_16865: ydeE - efflux MFS transporter YdeE, at 283,317 to 284,504
ydeE
MCAODC_16870: pspE - rhodanese, at 284,545 to 284,940
pspE
MCAODC_16875: ftrA - transcriptional regulator FtrA, at 285,035 to 286,006
ftrA
Position (kb) 283
284
285 Strain fitness (log2 ratio) -2
-1
0
1
2 at 282.377 kb on - strand, within eamA at 282.407 kb on + strand, within eamA at 282.446 kb on - strand, within eamA at 282.446 kb on - strand, within eamA at 282.575 kb on - strand, within eamA at 282.664 kb on - strand, within eamA at 283.039 kb on - strand at 283.039 kb on - strand at 283.068 kb on + strand at 283.079 kb on - strand at 283.094 kb on - strand at 283.210 kb on - strand at 283.221 kb on - strand at 283.221 kb on - strand at 283.221 kb on - strand at 283.221 kb on - strand at 283.221 kb on - strand at 283.231 kb on + strand at 283.231 kb on + strand at 283.232 kb on - strand at 283.232 kb on - strand at 283.232 kb on - strand at 283.242 kb on - strand at 283.262 kb on + strand at 283.263 kb on - strand at 283.279 kb on - strand at 283.369 kb on + strand at 283.403 kb on + strand at 283.478 kb on + strand, within ydeE at 283.539 kb on + strand, within ydeE at 283.541 kb on + strand, within ydeE at 283.644 kb on + strand, within ydeE at 283.925 kb on - strand, within ydeE at 284.010 kb on + strand, within ydeE at 284.213 kb on - strand, within ydeE at 284.213 kb on - strand, within ydeE at 284.237 kb on - strand, within ydeE at 284.241 kb on - strand, within ydeE at 284.255 kb on - strand, within ydeE at 284.274 kb on + strand, within ydeE at 284.274 kb on + strand, within ydeE at 284.277 kb on - strand, within ydeE at 284.291 kb on + strand, within ydeE at 284.338 kb on + strand, within ydeE at 284.338 kb on + strand, within ydeE at 284.369 kb on - strand, within ydeE at 284.387 kb on + strand at 284.387 kb on + strand at 284.659 kb on - strand, within pspE at 284.690 kb on - strand, within pspE at 284.690 kb on - strand, within pspE at 284.690 kb on - strand, within pspE at 284.933 kb on + strand at 284.934 kb on - strand at 285.045 kb on + strand at 285.046 kb on - strand at 285.075 kb on - strand at 285.084 kb on + strand at 285.084 kb on + strand at 285.084 kb on + strand at 285.085 kb on - strand at 285.148 kb on + strand, within ftrA at 285.192 kb on + strand, within ftrA at 285.262 kb on + strand, within ftrA at 285.265 kb on + strand, within ftrA at 285.286 kb on - strand, within ftrA at 285.488 kb on + strand, within ftrA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 282,377 - eamA MCAODC_16860 0.17 -0.2 282,407 + eamA MCAODC_16860 0.20 +1.1 282,446 - eamA MCAODC_16860 0.25 +0.5 282,446 - eamA MCAODC_16860 0.25 +2.1 282,575 - eamA MCAODC_16860 0.39 -1.5 282,664 - eamA MCAODC_16860 0.49 +0.8 283,039 - +1.7 283,039 - +0.5 283,068 + -0.5 283,079 - +1.3 283,094 - -0.4 283,210 - +0.7 283,221 - -0.2 283,221 - +0.7 283,221 - +1.3 283,221 - -0.0 283,221 - +0.5 283,231 + -0.5 283,231 + +0.4 283,232 - +1.9 283,232 - +0.6 283,232 - -0.8 283,242 - -0.2 283,262 + -0.8 283,263 - +0.6 283,279 - +0.8 283,369 + +0.3 283,403 + +0.3 283,478 + ydeE MCAODC_16865 0.14 -1.0 283,539 + ydeE MCAODC_16865 0.19 +0.3 283,541 + ydeE MCAODC_16865 0.19 +1.6 283,644 + ydeE MCAODC_16865 0.28 +0.4 283,925 - ydeE MCAODC_16865 0.51 +1.3 284,010 + ydeE MCAODC_16865 0.58 +0.0 284,213 - ydeE MCAODC_16865 0.75 -1.5 284,213 - ydeE MCAODC_16865 0.75 +0.1 284,237 - ydeE MCAODC_16865 0.77 -0.8 284,241 - ydeE MCAODC_16865 0.78 +0.3 284,255 - ydeE MCAODC_16865 0.79 -0.1 284,274 + ydeE MCAODC_16865 0.81 -0.7 284,274 + ydeE MCAODC_16865 0.81 +0.9 284,277 - ydeE MCAODC_16865 0.81 -0.5 284,291 + ydeE MCAODC_16865 0.82 +0.0 284,338 + ydeE MCAODC_16865 0.86 +0.7 284,338 + ydeE MCAODC_16865 0.86 -0.2 284,369 - ydeE MCAODC_16865 0.89 -0.1 284,387 + +0.8 284,387 + +1.3 284,659 - pspE MCAODC_16870 0.29 +0.2 284,690 - pspE MCAODC_16870 0.37 +1.5 284,690 - pspE MCAODC_16870 0.37 -0.6 284,690 - pspE MCAODC_16870 0.37 +0.1 284,933 + +0.0 284,934 - -0.4 285,045 + +0.0 285,046 - -2.7 285,075 - -1.6 285,084 + +1.4 285,084 + -0.1 285,084 + +1.9 285,085 - +0.4 285,148 + ftrA MCAODC_16875 0.12 -1.6 285,192 + ftrA MCAODC_16875 0.16 +0.5 285,262 + ftrA MCAODC_16875 0.23 -0.0 285,265 + ftrA MCAODC_16875 0.24 +0.8 285,286 - ftrA MCAODC_16875 0.26 +1.2 285,488 + ftrA MCAODC_16875 0.47 +0.3
Or see this region's nucleotide sequence