Strain Fitness in Escherichia coli ECRC101 around MCAODC_15615

Experiment: WM_TP9

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttrpE and trpL are separated by 91 nucleotidestrpL and yciV are separated by 137 nucleotides MCAODC_15610: trpE - anthranilate synthase component I, at 12,391 to 13,953 trpE MCAODC_15615: trpL - trp operon leader peptide, at 14,045 to 14,089 trpL MCAODC_15620: yciV - 5'-3' exoribonuclease, at 14,227 to 15,108 yciV Position (kb) 14 15Strain fitness (log2 ratio) -2 -1 0 1at 13.079 kb on + strand, within trpEat 13.080 kb on - strand, within trpEat 13.109 kb on + strand, within trpEat 13.110 kb on - strand, within trpEat 13.113 kb on - strand, within trpEat 13.449 kb on + strand, within trpEat 13.500 kb on - strand, within trpEat 13.600 kb on + strand, within trpEat 13.600 kb on + strand, within trpEat 13.664 kb on - strand, within trpEat 13.790 kb on - strand, within trpEat 13.807 kb on + strandat 13.808 kb on - strandat 13.958 kb on - strandat 14.243 kb on - strandat 14.271 kb on + strandat 14.499 kb on + strand, within yciVat 14.499 kb on + strand, within yciVat 14.592 kb on + strand, within yciVat 14.593 kb on - strand, within yciVat 14.593 kb on - strand, within yciVat 14.593 kb on - strand, within yciVat 14.593 kb on - strand, within yciVat 14.594 kb on + strand, within yciVat 14.595 kb on - strand, within yciVat 14.765 kb on + strand, within yciVat 14.775 kb on + strand, within yciVat 14.775 kb on + strand, within yciVat 14.775 kb on + strand, within yciVat 14.813 kb on + strand, within yciVat 14.934 kb on + strand, within yciVat 14.969 kb on + strand, within yciVat 15.027 kb on + strandat 15.068 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP9
remove
13,079 + trpE MCAODC_15610 0.44 -1.3
13,080 - trpE MCAODC_15610 0.44 +0.4
13,109 + trpE MCAODC_15610 0.46 -0.4
13,110 - trpE MCAODC_15610 0.46 -0.0
13,113 - trpE MCAODC_15610 0.46 -2.2
13,449 + trpE MCAODC_15610 0.68 -0.9
13,500 - trpE MCAODC_15610 0.71 -0.7
13,600 + trpE MCAODC_15610 0.77 -0.5
13,600 + trpE MCAODC_15610 0.77 +0.7
13,664 - trpE MCAODC_15610 0.81 -0.8
13,790 - trpE MCAODC_15610 0.90 -1.7
13,807 + -0.1
13,808 - -1.6
13,958 - -0.3
14,243 - +0.1
14,271 + -1.0
14,499 + yciV MCAODC_15620 0.31 +0.4
14,499 + yciV MCAODC_15620 0.31 -2.4
14,592 + yciV MCAODC_15620 0.41 -1.2
14,593 - yciV MCAODC_15620 0.41 +0.1
14,593 - yciV MCAODC_15620 0.41 +1.3
14,593 - yciV MCAODC_15620 0.41 +0.4
14,593 - yciV MCAODC_15620 0.41 -1.0
14,594 + yciV MCAODC_15620 0.42 -0.8
14,595 - yciV MCAODC_15620 0.42 +0.2
14,765 + yciV MCAODC_15620 0.61 +1.2
14,775 + yciV MCAODC_15620 0.62 +0.6
14,775 + yciV MCAODC_15620 0.62 -0.4
14,775 + yciV MCAODC_15620 0.62 -0.5
14,813 + yciV MCAODC_15620 0.66 -1.1
14,934 + yciV MCAODC_15620 0.80 +0.8
14,969 + yciV MCAODC_15620 0.84 +0.3
15,027 + -0.1
15,068 + +0.1

Or see this region's nucleotide sequence