Strain Fitness in Escherichia coli ECRC101 around MCAODC_06150

Experiment: WM_TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpmG and MCAODC_06145 are separated by 97 nucleotidesMCAODC_06145 and coaD are separated by 38 nucleotidescoaD and waaA are separated by 7 nucleotides MCAODC_06140: rpmG - 50S ribosomal protein L33, at 1,230,895 to 1,231,062 rpmG MCAODC_06145: MCAODC_06145 - Formamidopyrimidine-DNA glycosylase, at 1,231,160 to 1,231,969 _06145 MCAODC_06150: coaD - pantetheine-phosphate adenylyltransferase, at 1,232,008 to 1,232,487 coaD MCAODC_06155: waaA - lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase, at 1,232,495 to 1,233,772 waaA Position (kb) 1232 1233Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1231.127 kb on + strandat 1231.127 kb on + strandat 1231.128 kb on - strandat 1231.159 kb on + strandat 1231.159 kb on + strandat 1231.159 kb on + strandat 1231.159 kb on + strandat 1231.159 kb on + strandat 1231.159 kb on + strandat 1231.160 kb on - strandat 1231.160 kb on - strandat 1231.160 kb on - strandat 1231.160 kb on - strandat 1231.160 kb on - strandat 1231.160 kb on - strandat 1231.160 kb on - strandat 1231.160 kb on - strandat 1231.160 kb on - strandat 1231.160 kb on - strandat 1231.160 kb on - strandat 1231.160 kb on - strandat 1231.160 kb on - strandat 1231.160 kb on - strandat 1231.160 kb on - strandat 1231.160 kb on - strandat 1231.160 kb on - strandat 1231.160 kb on - strandat 1231.160 kb on - strandat 1231.200 kb on + strandat 1231.283 kb on + strand, within MCAODC_06145at 1231.283 kb on + strand, within MCAODC_06145at 1231.284 kb on - strand, within MCAODC_06145at 1231.284 kb on - strand, within MCAODC_06145at 1231.284 kb on - strand, within MCAODC_06145at 1231.287 kb on - strand, within MCAODC_06145at 1231.290 kb on + strand, within MCAODC_06145at 1231.291 kb on - strand, within MCAODC_06145at 1231.327 kb on + strand, within MCAODC_06145at 1231.331 kb on + strand, within MCAODC_06145at 1231.331 kb on + strand, within MCAODC_06145at 1231.332 kb on - strand, within MCAODC_06145at 1231.332 kb on - strand, within MCAODC_06145at 1231.363 kb on + strand, within MCAODC_06145at 1231.363 kb on + strand, within MCAODC_06145at 1231.364 kb on - strand, within MCAODC_06145at 1231.364 kb on - strand, within MCAODC_06145at 1231.364 kb on - strand, within MCAODC_06145at 1231.364 kb on - strand, within MCAODC_06145at 1231.472 kb on + strand, within MCAODC_06145at 1231.529 kb on - strand, within MCAODC_06145at 1231.529 kb on - strand, within MCAODC_06145at 1231.562 kb on - strand, within MCAODC_06145at 1231.583 kb on + strand, within MCAODC_06145at 1231.583 kb on + strand, within MCAODC_06145at 1231.583 kb on + strand, within MCAODC_06145at 1231.584 kb on - strand, within MCAODC_06145at 1231.584 kb on - strand, within MCAODC_06145at 1231.622 kb on - strand, within MCAODC_06145at 1231.622 kb on - strand, within MCAODC_06145at 1231.666 kb on + strand, within MCAODC_06145at 1231.666 kb on + strand, within MCAODC_06145at 1231.666 kb on + strand, within MCAODC_06145at 1231.666 kb on + strand, within MCAODC_06145at 1231.666 kb on + strand, within MCAODC_06145at 1231.666 kb on + strand, within MCAODC_06145at 1231.667 kb on - strand, within MCAODC_06145at 1231.670 kb on + strand, within MCAODC_06145at 1231.670 kb on + strand, within MCAODC_06145at 1231.670 kb on + strand, within MCAODC_06145at 1231.671 kb on - strand, within MCAODC_06145at 1231.671 kb on - strand, within MCAODC_06145at 1231.752 kb on + strand, within MCAODC_06145at 1231.753 kb on - strand, within MCAODC_06145at 1231.766 kb on - strand, within MCAODC_06145at 1231.801 kb on + strand, within MCAODC_06145at 1231.801 kb on + strand, within MCAODC_06145at 1231.801 kb on + strand, within MCAODC_06145at 1231.802 kb on - strand, within MCAODC_06145at 1231.834 kb on + strand, within MCAODC_06145at 1231.835 kb on - strand, within MCAODC_06145at 1231.835 kb on - strand, within MCAODC_06145at 1231.835 kb on - strand, within MCAODC_06145at 1231.869 kb on - strand, within MCAODC_06145at 1231.903 kb on + strandat 1231.921 kb on + strandat 1231.946 kb on + strandat 1231.967 kb on + strandat 1231.967 kb on + strandat 1231.968 kb on - strandat 1231.968 kb on - strandat 1231.991 kb on - strandat 1231.991 kb on - strandat 1231.991 kb on - strandat 1231.991 kb on - strandat 1232.003 kb on - strandat 1232.015 kb on - strandat 1232.488 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP9
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1,231,127 + -0.5
1,231,127 + -0.2
1,231,128 - -0.9
1,231,159 + -0.3
1,231,159 + -0.5
1,231,159 + -0.7
1,231,159 + -0.0
1,231,159 + -1.1
1,231,159 + +0.5
1,231,160 - +0.7
1,231,160 - +0.2
1,231,160 - +0.9
1,231,160 - +0.4
1,231,160 - -0.3
1,231,160 - -0.6
1,231,160 - +2.0
1,231,160 - +0.1
1,231,160 - +1.7
1,231,160 - +1.0
1,231,160 - +0.1
1,231,160 - +1.1
1,231,160 - +0.3
1,231,160 - +0.4
1,231,160 - +0.2
1,231,160 - +0.7
1,231,160 - +0.1
1,231,160 - +0.9
1,231,160 - -0.0
1,231,200 + -2.3
1,231,283 + MCAODC_06145 0.15 -0.2
1,231,283 + MCAODC_06145 0.15 -0.2
1,231,284 - MCAODC_06145 0.15 -0.4
1,231,284 - MCAODC_06145 0.15 -0.8
1,231,284 - MCAODC_06145 0.15 +0.1
1,231,287 - MCAODC_06145 0.16 -2.8
1,231,290 + MCAODC_06145 0.16 +0.3
1,231,291 - MCAODC_06145 0.16 +0.1
1,231,327 + MCAODC_06145 0.21 -0.7
1,231,331 + MCAODC_06145 0.21 +0.6
1,231,331 + MCAODC_06145 0.21 -0.6
1,231,332 - MCAODC_06145 0.21 -0.2
1,231,332 - MCAODC_06145 0.21 +0.4
1,231,363 + MCAODC_06145 0.25 +0.1
1,231,363 + MCAODC_06145 0.25 -0.9
1,231,364 - MCAODC_06145 0.25 +0.4
1,231,364 - MCAODC_06145 0.25 -1.0
1,231,364 - MCAODC_06145 0.25 +0.2
1,231,364 - MCAODC_06145 0.25 +1.2
1,231,472 + MCAODC_06145 0.39 +0.6
1,231,529 - MCAODC_06145 0.46 -0.3
1,231,529 - MCAODC_06145 0.46 +0.0
1,231,562 - MCAODC_06145 0.50 +0.0
1,231,583 + MCAODC_06145 0.52 +1.5
1,231,583 + MCAODC_06145 0.52 +0.3
1,231,583 + MCAODC_06145 0.52 +0.3
1,231,584 - MCAODC_06145 0.52 +0.4
1,231,584 - MCAODC_06145 0.52 -0.0
1,231,622 - MCAODC_06145 0.57 +0.0
1,231,622 - MCAODC_06145 0.57 -0.1
1,231,666 + MCAODC_06145 0.62 +0.0
1,231,666 + MCAODC_06145 0.62 +0.5
1,231,666 + MCAODC_06145 0.62 +0.6
1,231,666 + MCAODC_06145 0.62 -0.9
1,231,666 + MCAODC_06145 0.62 +0.6
1,231,666 + MCAODC_06145 0.62 +1.2
1,231,667 - MCAODC_06145 0.63 +1.2
1,231,670 + MCAODC_06145 0.63 -0.2
1,231,670 + MCAODC_06145 0.63 +0.6
1,231,670 + MCAODC_06145 0.63 -0.3
1,231,671 - MCAODC_06145 0.63 +0.6
1,231,671 - MCAODC_06145 0.63 +0.8
1,231,752 + MCAODC_06145 0.73 +0.2
1,231,753 - MCAODC_06145 0.73 -0.0
1,231,766 - MCAODC_06145 0.75 +0.2
1,231,801 + MCAODC_06145 0.79 +1.6
1,231,801 + MCAODC_06145 0.79 +1.4
1,231,801 + MCAODC_06145 0.79 +0.4
1,231,802 - MCAODC_06145 0.79 +1.1
1,231,834 + MCAODC_06145 0.83 -0.7
1,231,835 - MCAODC_06145 0.83 -1.5
1,231,835 - MCAODC_06145 0.83 +0.1
1,231,835 - MCAODC_06145 0.83 +0.3
1,231,869 - MCAODC_06145 0.88 -0.1
1,231,903 + +0.2
1,231,921 + -0.2
1,231,946 + -0.6
1,231,967 + +0.0
1,231,967 + +0.8
1,231,968 - -0.1
1,231,968 - -0.1
1,231,991 - -0.1
1,231,991 - -0.2
1,231,991 - +0.1
1,231,991 - -0.9
1,232,003 - -0.5
1,232,015 - +0.3
1,232,488 - +1.0

Or see this region's nucleotide sequence