Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glnL and glnG are separated by 11 nucleotides glnG and MCAODC_04615 are separated by 111 nucleotides MCAODC_04615 and hemN are separated by 189 nucleotides
MCAODC_04605: glnL - nitrogen regulation protein NR(II), at 933,900 to 934,949
glnL
MCAODC_04610: glnG - nitrogen regulation protein NR(I), at 934,961 to 936,370
glnG
MCAODC_04615: MCAODC_04615 - Uncharacterized protein YshB, at 936,482 to 936,592
_04615
MCAODC_04620: hemN - oxygen-independent coproporphyrinogen III oxidase, at 936,782 to 938,155
hemN
Position (kb) 934
935
936
937 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 934.071 kb on + strand, within glnL at 934.071 kb on + strand, within glnL at 934.072 kb on - strand, within glnL at 934.072 kb on - strand, within glnL at 934.081 kb on + strand, within glnL at 934.081 kb on + strand, within glnL at 934.081 kb on + strand, within glnL at 934.082 kb on - strand, within glnL at 934.082 kb on - strand, within glnL at 934.085 kb on + strand, within glnL at 934.193 kb on + strand, within glnL at 934.250 kb on - strand, within glnL at 934.265 kb on - strand, within glnL at 934.323 kb on - strand, within glnL at 934.323 kb on - strand, within glnL at 934.342 kb on + strand, within glnL at 934.360 kb on + strand, within glnL at 934.361 kb on - strand, within glnL at 934.361 kb on - strand, within glnL at 934.398 kb on + strand, within glnL at 934.398 kb on + strand, within glnL at 934.398 kb on + strand, within glnL at 934.399 kb on - strand, within glnL at 934.400 kb on + strand, within glnL at 934.631 kb on + strand, within glnL at 934.632 kb on - strand, within glnL at 934.714 kb on + strand, within glnL at 934.714 kb on + strand, within glnL at 934.760 kb on + strand, within glnL at 934.846 kb on + strand at 934.859 kb on + strand at 934.895 kb on + strand at 934.895 kb on + strand at 934.896 kb on - strand at 934.930 kb on - strand at 934.947 kb on + strand at 934.947 kb on + strand at 934.948 kb on - strand at 934.948 kb on - strand at 934.975 kb on - strand at 934.996 kb on + strand at 934.996 kb on + strand at 934.996 kb on + strand at 934.997 kb on - strand at 934.997 kb on - strand at 935.043 kb on + strand at 935.050 kb on + strand at 935.050 kb on + strand at 935.051 kb on - strand at 935.128 kb on + strand, within glnG at 935.129 kb on - strand, within glnG at 935.200 kb on + strand, within glnG at 935.200 kb on + strand, within glnG at 935.240 kb on + strand, within glnG at 935.261 kb on + strand, within glnG at 935.261 kb on + strand, within glnG at 935.324 kb on + strand, within glnG at 935.416 kb on + strand, within glnG at 935.417 kb on - strand, within glnG at 935.417 kb on - strand, within glnG at 935.419 kb on + strand, within glnG at 935.443 kb on + strand, within glnG at 935.443 kb on + strand, within glnG at 935.446 kb on + strand, within glnG at 935.536 kb on + strand, within glnG at 935.623 kb on + strand, within glnG at 935.624 kb on - strand, within glnG at 935.662 kb on + strand, within glnG at 935.663 kb on - strand, within glnG at 935.663 kb on - strand, within glnG at 935.667 kb on + strand, within glnG at 935.667 kb on + strand, within glnG at 935.667 kb on + strand, within glnG at 935.667 kb on + strand, within glnG at 935.667 kb on + strand, within glnG at 935.667 kb on + strand, within glnG at 935.667 kb on + strand, within glnG at 935.668 kb on - strand, within glnG at 935.668 kb on - strand, within glnG at 935.833 kb on + strand, within glnG at 935.834 kb on - strand, within glnG at 935.834 kb on - strand, within glnG at 935.834 kb on - strand, within glnG at 935.911 kb on + strand, within glnG at 935.911 kb on + strand, within glnG at 935.912 kb on - strand, within glnG at 935.964 kb on + strand, within glnG at 935.965 kb on - strand, within glnG at 935.965 kb on - strand, within glnG at 936.140 kb on - strand, within glnG at 936.280 kb on + strand at 936.281 kb on - strand at 936.343 kb on + strand at 936.397 kb on + strand at 936.398 kb on - strand at 936.418 kb on - strand at 936.429 kb on + strand at 936.429 kb on + strand at 936.430 kb on - strand at 936.441 kb on - strand at 936.482 kb on - strand at 936.482 kb on - strand at 936.482 kb on - strand at 936.496 kb on - strand, within MCAODC_04615 at 936.499 kb on + strand, within MCAODC_04615 at 936.500 kb on - strand, within MCAODC_04615 at 936.587 kb on - strand at 936.587 kb on - strand at 936.587 kb on - strand at 936.754 kb on - strand at 936.760 kb on + strand at 936.783 kb on + strand at 936.783 kb on + strand at 936.783 kb on + strand at 936.783 kb on + strand at 936.784 kb on - strand at 936.784 kb on - strand at 936.828 kb on + strand at 936.829 kb on - strand at 936.829 kb on - strand at 936.829 kb on - strand at 936.829 kb on - strand at 936.829 kb on - strand at 936.832 kb on + strand at 936.832 kb on + strand at 936.832 kb on + strand at 936.887 kb on + strand at 936.887 kb on + strand at 936.961 kb on - strand, within hemN at 936.961 kb on - strand, within hemN at 936.994 kb on + strand, within hemN at 937.002 kb on + strand, within hemN at 937.034 kb on - strand, within hemN at 937.052 kb on - strand, within hemN at 937.076 kb on - strand, within hemN at 937.116 kb on + strand, within hemN at 937.117 kb on - strand, within hemN at 937.117 kb on - strand, within hemN at 937.119 kb on + strand, within hemN at 937.119 kb on + strand, within hemN at 937.120 kb on - strand, within hemN at 937.149 kb on + strand, within hemN
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 934,071 + glnL MCAODC_04605 0.16 +0.2 934,071 + glnL MCAODC_04605 0.16 +0.5 934,072 - glnL MCAODC_04605 0.16 -2.2 934,072 - glnL MCAODC_04605 0.16 -0.9 934,081 + glnL MCAODC_04605 0.17 -0.2 934,081 + glnL MCAODC_04605 0.17 -1.1 934,081 + glnL MCAODC_04605 0.17 +0.5 934,082 - glnL MCAODC_04605 0.17 -1.9 934,082 - glnL MCAODC_04605 0.17 -1.9 934,085 + glnL MCAODC_04605 0.18 -1.8 934,193 + glnL MCAODC_04605 0.28 -1.1 934,250 - glnL MCAODC_04605 0.33 -0.8 934,265 - glnL MCAODC_04605 0.35 -3.0 934,323 - glnL MCAODC_04605 0.40 -3.4 934,323 - glnL MCAODC_04605 0.40 -0.9 934,342 + glnL MCAODC_04605 0.42 -0.5 934,360 + glnL MCAODC_04605 0.44 -1.1 934,361 - glnL MCAODC_04605 0.44 -1.9 934,361 - glnL MCAODC_04605 0.44 -1.5 934,398 + glnL MCAODC_04605 0.47 -1.1 934,398 + glnL MCAODC_04605 0.47 -1.8 934,398 + glnL MCAODC_04605 0.47 -0.2 934,399 - glnL MCAODC_04605 0.48 -1.6 934,400 + glnL MCAODC_04605 0.48 -0.6 934,631 + glnL MCAODC_04605 0.70 -1.6 934,632 - glnL MCAODC_04605 0.70 -1.3 934,714 + glnL MCAODC_04605 0.78 -2.3 934,714 + glnL MCAODC_04605 0.78 -0.5 934,760 + glnL MCAODC_04605 0.82 +0.1 934,846 + -0.5 934,859 + +0.2 934,895 + -2.7 934,895 + -0.9 934,896 - -1.3 934,930 - -0.6 934,947 + +0.4 934,947 + +0.6 934,948 - -0.8 934,948 - -1.0 934,975 - -3.2 934,996 + -1.2 934,996 + +0.5 934,996 + -2.8 934,997 - -1.0 934,997 - -2.2 935,043 + -2.6 935,050 + -0.4 935,050 + -2.2 935,051 - -1.6 935,128 + glnG MCAODC_04610 0.12 -2.1 935,129 - glnG MCAODC_04610 0.12 -1.8 935,200 + glnG MCAODC_04610 0.17 -2.1 935,200 + glnG MCAODC_04610 0.17 -0.8 935,240 + glnG MCAODC_04610 0.20 -1.4 935,261 + glnG MCAODC_04610 0.21 -1.5 935,261 + glnG MCAODC_04610 0.21 -0.3 935,324 + glnG MCAODC_04610 0.26 -1.3 935,416 + glnG MCAODC_04610 0.32 -1.4 935,417 - glnG MCAODC_04610 0.32 -0.1 935,417 - glnG MCAODC_04610 0.32 -2.3 935,419 + glnG MCAODC_04610 0.32 -2.3 935,443 + glnG MCAODC_04610 0.34 -1.7 935,443 + glnG MCAODC_04610 0.34 -2.0 935,446 + glnG MCAODC_04610 0.34 -0.9 935,536 + glnG MCAODC_04610 0.41 -3.0 935,623 + glnG MCAODC_04610 0.47 -1.7 935,624 - glnG MCAODC_04610 0.47 -1.7 935,662 + glnG MCAODC_04610 0.50 -1.5 935,663 - glnG MCAODC_04610 0.50 -1.3 935,663 - glnG MCAODC_04610 0.50 -1.3 935,667 + glnG MCAODC_04610 0.50 -0.7 935,667 + glnG MCAODC_04610 0.50 -0.4 935,667 + glnG MCAODC_04610 0.50 -2.6 935,667 + glnG MCAODC_04610 0.50 -1.8 935,667 + glnG MCAODC_04610 0.50 -1.8 935,667 + glnG MCAODC_04610 0.50 -1.6 935,667 + glnG MCAODC_04610 0.50 -2.2 935,668 - glnG MCAODC_04610 0.50 -0.9 935,668 - glnG MCAODC_04610 0.50 -0.2 935,833 + glnG MCAODC_04610 0.62 -0.6 935,834 - glnG MCAODC_04610 0.62 -2.9 935,834 - glnG MCAODC_04610 0.62 -1.0 935,834 - glnG MCAODC_04610 0.62 -0.0 935,911 + glnG MCAODC_04610 0.67 -2.5 935,911 + glnG MCAODC_04610 0.67 -0.2 935,912 - glnG MCAODC_04610 0.67 -0.5 935,964 + glnG MCAODC_04610 0.71 -1.2 935,965 - glnG MCAODC_04610 0.71 -1.9 935,965 - glnG MCAODC_04610 0.71 -1.6 936,140 - glnG MCAODC_04610 0.84 -3.2 936,280 + -1.9 936,281 - +0.3 936,343 + +1.2 936,397 + +0.3 936,398 - +0.4 936,418 - +0.6 936,429 + -2.9 936,429 + +0.4 936,430 - -0.2 936,441 - -0.1 936,482 - +0.3 936,482 - +0.8 936,482 - -0.1 936,496 - MCAODC_04615 0.13 +0.2 936,499 + MCAODC_04615 0.15 -0.1 936,500 - MCAODC_04615 0.16 +0.4 936,587 - -0.7 936,587 - +0.7 936,587 - -0.7 936,754 - -0.9 936,760 + -0.5 936,783 + +0.6 936,783 + -0.1 936,783 + +0.3 936,783 + -1.6 936,784 - +0.7 936,784 - -0.0 936,828 + -0.0 936,829 - +0.2 936,829 - +1.1 936,829 - -0.0 936,829 - -0.9 936,829 - +0.8 936,832 + -0.0 936,832 + -0.9 936,832 + +0.9 936,887 + +0.5 936,887 + -1.4 936,961 - hemN MCAODC_04620 0.13 -0.1 936,961 - hemN MCAODC_04620 0.13 +0.5 936,994 + hemN MCAODC_04620 0.15 +0.1 937,002 + hemN MCAODC_04620 0.16 +0.2 937,034 - hemN MCAODC_04620 0.18 +0.0 937,052 - hemN MCAODC_04620 0.20 +0.4 937,076 - hemN MCAODC_04620 0.21 -0.5 937,116 + hemN MCAODC_04620 0.24 -0.8 937,117 - hemN MCAODC_04620 0.24 -0.4 937,117 - hemN MCAODC_04620 0.24 +0.0 937,119 + hemN MCAODC_04620 0.25 +0.5 937,119 + hemN MCAODC_04620 0.25 -0.2 937,120 - hemN MCAODC_04620 0.25 -1.1 937,149 + hemN MCAODC_04620 0.27 +0.7
Or see this region's nucleotide sequence