Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ftsN and hslV are separated by 92 nucleotides hslV and hslU are separated by 9 nucleotides hslU and menA are separated by 66 nucleotides
MCAODC_04230: ftsN - cell division protein FtsN, at 861,426 to 862,280
ftsN
MCAODC_04235: hslV - ATP-dependent protease subunit HslV, at 862,373 to 862,903
hslV
MCAODC_04240: hslU - HslU--HslV peptidase ATPase subunit, at 862,913 to 864,244
hslU
MCAODC_04245: menA - 1,4-dihydroxy-2-naphthoate polyprenyltransferase, at 864,311 to 865,237
menA
Position (kb) 862
863
864
865 Strain fitness (log2 ratio) -2
-1
0
1
2 at 861.914 kb on + strand, within ftsN at 861.927 kb on - strand, within ftsN at 861.939 kb on + strand, within ftsN at 862.007 kb on + strand, within ftsN at 862.111 kb on + strand, within ftsN at 862.112 kb on - strand, within ftsN at 862.151 kb on + strand, within ftsN at 862.247 kb on + strand at 862.247 kb on + strand at 862.248 kb on - strand at 862.248 kb on - strand at 862.248 kb on - strand at 862.248 kb on - strand at 862.303 kb on + strand at 862.303 kb on + strand at 862.303 kb on + strand at 862.303 kb on + strand at 862.305 kb on + strand at 862.305 kb on + strand at 862.305 kb on + strand at 862.305 kb on + strand at 862.305 kb on + strand at 862.305 kb on + strand at 862.323 kb on + strand at 862.349 kb on + strand at 862.349 kb on + strand at 862.381 kb on + strand at 862.381 kb on + strand at 862.381 kb on + strand at 862.381 kb on + strand at 862.381 kb on + strand at 862.381 kb on + strand at 862.381 kb on + strand at 862.381 kb on + strand at 862.381 kb on + strand at 862.381 kb on + strand at 862.381 kb on + strand at 862.382 kb on - strand at 862.382 kb on - strand at 862.382 kb on - strand at 862.382 kb on - strand at 862.382 kb on - strand at 862.383 kb on + strand at 862.383 kb on + strand at 862.383 kb on + strand at 862.384 kb on - strand at 862.386 kb on + strand at 862.386 kb on + strand at 862.387 kb on - strand at 862.387 kb on - strand at 862.392 kb on + strand at 862.448 kb on - strand, within hslV at 862.624 kb on + strand, within hslV at 862.732 kb on + strand, within hslV at 862.732 kb on + strand, within hslV at 862.732 kb on + strand, within hslV at 862.732 kb on + strand, within hslV at 862.733 kb on - strand, within hslV at 862.733 kb on - strand, within hslV at 862.856 kb on + strand at 862.887 kb on + strand at 862.887 kb on + strand at 862.892 kb on + strand at 862.901 kb on + strand at 863.183 kb on + strand, within hslU at 863.209 kb on + strand, within hslU at 863.302 kb on + strand, within hslU at 863.554 kb on + strand, within hslU at 863.975 kb on + strand, within hslU at 864.008 kb on - strand, within hslU at 864.031 kb on + strand, within hslU at 864.096 kb on + strand, within hslU at 864.117 kb on + strand at 864.182 kb on + strand at 864.182 kb on + strand at 864.182 kb on + strand at 864.235 kb on + strand at 864.240 kb on + strand at 864.240 kb on + strand at 864.308 kb on - strand at 864.310 kb on + strand at 864.329 kb on - strand at 864.365 kb on - strand at 864.394 kb on + strand at 864.394 kb on + strand at 864.464 kb on - strand, within menA at 864.477 kb on + strand, within menA at 864.478 kb on - strand, within menA at 864.478 kb on - strand, within menA at 864.478 kb on - strand, within menA at 864.490 kb on + strand, within menA at 864.520 kb on - strand, within menA at 864.610 kb on + strand, within menA at 864.610 kb on + strand, within menA at 864.610 kb on + strand, within menA at 864.611 kb on - strand, within menA at 864.611 kb on - strand, within menA at 864.731 kb on + strand, within menA at 864.731 kb on + strand, within menA at 864.732 kb on - strand, within menA at 864.752 kb on + strand, within menA at 864.752 kb on + strand, within menA at 864.758 kb on + strand, within menA at 864.758 kb on + strand, within menA at 864.759 kb on - strand, within menA at 864.759 kb on - strand, within menA at 864.828 kb on + strand, within menA at 864.838 kb on + strand, within menA at 864.838 kb on + strand, within menA at 864.838 kb on + strand, within menA at 864.838 kb on + strand, within menA at 864.838 kb on + strand, within menA at 864.839 kb on - strand, within menA at 864.839 kb on - strand, within menA at 864.839 kb on - strand, within menA at 864.839 kb on - strand, within menA at 864.839 kb on - strand, within menA at 864.907 kb on + strand, within menA at 864.907 kb on + strand, within menA at 864.908 kb on - strand, within menA at 864.969 kb on + strand, within menA at 864.970 kb on - strand, within menA at 865.024 kb on - strand, within menA at 865.039 kb on + strand, within menA at 865.040 kb on - strand, within menA at 865.116 kb on - strand, within menA at 865.189 kb on + strand at 865.207 kb on - strand at 865.235 kb on + strand at 865.236 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 861,914 + ftsN MCAODC_04230 0.57 -0.8 861,927 - ftsN MCAODC_04230 0.59 +1.2 861,939 + ftsN MCAODC_04230 0.60 +0.6 862,007 + ftsN MCAODC_04230 0.68 +0.7 862,111 + ftsN MCAODC_04230 0.80 +1.4 862,112 - ftsN MCAODC_04230 0.80 -1.0 862,151 + ftsN MCAODC_04230 0.85 -0.4 862,247 + -0.1 862,247 + +1.3 862,248 - -1.1 862,248 - -1.4 862,248 - +0.4 862,248 - +0.4 862,303 + +1.0 862,303 + +1.0 862,303 + +0.1 862,303 + +0.5 862,305 + +0.8 862,305 + -1.2 862,305 + +0.0 862,305 + -0.4 862,305 + +0.7 862,305 + -0.0 862,323 + -0.3 862,349 + +0.4 862,349 + -0.3 862,381 + -1.2 862,381 + -1.7 862,381 + -0.2 862,381 + -0.7 862,381 + -0.5 862,381 + -0.6 862,381 + +0.6 862,381 + -2.1 862,381 + -0.3 862,381 + +0.6 862,381 + -0.2 862,382 - +0.2 862,382 - -0.1 862,382 - +0.0 862,382 - -1.4 862,382 - +0.2 862,383 + -1.2 862,383 + +1.6 862,383 + +1.4 862,384 - -1.0 862,386 + -0.5 862,386 + +0.6 862,387 - +0.1 862,387 - -0.2 862,392 + -1.4 862,448 - hslV MCAODC_04235 0.14 -1.7 862,624 + hslV MCAODC_04235 0.47 +1.0 862,732 + hslV MCAODC_04235 0.68 +1.3 862,732 + hslV MCAODC_04235 0.68 -0.8 862,732 + hslV MCAODC_04235 0.68 -0.3 862,732 + hslV MCAODC_04235 0.68 -0.0 862,733 - hslV MCAODC_04235 0.68 +0.2 862,733 - hslV MCAODC_04235 0.68 +0.3 862,856 + +0.4 862,887 + +0.1 862,887 + -1.2 862,892 + +1.1 862,901 + +0.3 863,183 + hslU MCAODC_04240 0.20 -1.9 863,209 + hslU MCAODC_04240 0.22 -0.8 863,302 + hslU MCAODC_04240 0.29 -0.3 863,554 + hslU MCAODC_04240 0.48 +0.4 863,975 + hslU MCAODC_04240 0.80 -0.3 864,008 - hslU MCAODC_04240 0.82 -0.3 864,031 + hslU MCAODC_04240 0.84 -1.4 864,096 + hslU MCAODC_04240 0.89 -1.6 864,117 + +1.1 864,182 + -0.7 864,182 + -1.7 864,182 + -1.6 864,235 + -2.5 864,240 + +0.6 864,240 + -0.6 864,308 - +0.8 864,310 + -0.8 864,329 - -0.9 864,365 - +0.1 864,394 + +1.1 864,394 + +0.2 864,464 - menA MCAODC_04245 0.17 -0.7 864,477 + menA MCAODC_04245 0.18 -0.3 864,478 - menA MCAODC_04245 0.18 +0.2 864,478 - menA MCAODC_04245 0.18 +0.0 864,478 - menA MCAODC_04245 0.18 +0.5 864,490 + menA MCAODC_04245 0.19 +0.7 864,520 - menA MCAODC_04245 0.23 +0.2 864,610 + menA MCAODC_04245 0.32 +0.1 864,610 + menA MCAODC_04245 0.32 +0.7 864,610 + menA MCAODC_04245 0.32 +0.2 864,611 - menA MCAODC_04245 0.32 -0.2 864,611 - menA MCAODC_04245 0.32 -0.1 864,731 + menA MCAODC_04245 0.45 -1.6 864,731 + menA MCAODC_04245 0.45 -0.1 864,732 - menA MCAODC_04245 0.45 +1.1 864,752 + menA MCAODC_04245 0.48 +0.8 864,752 + menA MCAODC_04245 0.48 -0.6 864,758 + menA MCAODC_04245 0.48 +0.3 864,758 + menA MCAODC_04245 0.48 +0.7 864,759 - menA MCAODC_04245 0.48 -0.4 864,759 - menA MCAODC_04245 0.48 +1.0 864,828 + menA MCAODC_04245 0.56 -0.6 864,838 + menA MCAODC_04245 0.57 +1.0 864,838 + menA MCAODC_04245 0.57 -0.6 864,838 + menA MCAODC_04245 0.57 +0.6 864,838 + menA MCAODC_04245 0.57 -0.4 864,838 + menA MCAODC_04245 0.57 +2.6 864,839 - menA MCAODC_04245 0.57 +0.2 864,839 - menA MCAODC_04245 0.57 +0.4 864,839 - menA MCAODC_04245 0.57 -0.0 864,839 - menA MCAODC_04245 0.57 +0.2 864,839 - menA MCAODC_04245 0.57 +2.0 864,907 + menA MCAODC_04245 0.64 +0.1 864,907 + menA MCAODC_04245 0.64 +0.1 864,908 - menA MCAODC_04245 0.64 +1.6 864,969 + menA MCAODC_04245 0.71 -1.9 864,970 - menA MCAODC_04245 0.71 -0.0 865,024 - menA MCAODC_04245 0.77 -0.6 865,039 + menA MCAODC_04245 0.79 -1.4 865,040 - menA MCAODC_04245 0.79 +0.3 865,116 - menA MCAODC_04245 0.87 +0.5 865,189 + +0.8 865,207 - +1.3 865,235 + +0.9 865,236 - +0.2
Or see this region's nucleotide sequence