Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_03215 and rbsA are separated by 113 nucleotides rbsA and MCAODC_03225 overlap by 4 nucleotides MCAODC_03225 and rbsB are separated by 18 nucleotides
MCAODC_03215: MCAODC_03215 - hybrid sensor histidine kinase/response regulator, at 645,342 to 647,612
_03215
MCAODC_03220: rbsA - Ribose import ATP-binding protein RbsA, at 647,726 to 649,246
rbsA
MCAODC_03225: MCAODC_03225 - ribose ABC transporter permease, at 649,243 to 650,217
_03225
MCAODC_03230: rbsB - transcriptional regulator, at 650,236 to 651,177
rbsB
Position (kb) 647
648
649
650 Strain fitness (log2 ratio) -2
-1
0
1
2 at 646.766 kb on - strand, within MCAODC_03215 at 646.865 kb on + strand, within MCAODC_03215 at 646.865 kb on + strand, within MCAODC_03215 at 646.865 kb on + strand, within MCAODC_03215 at 646.866 kb on - strand, within MCAODC_03215 at 646.866 kb on - strand, within MCAODC_03215 at 646.866 kb on - strand, within MCAODC_03215 at 646.866 kb on - strand, within MCAODC_03215 at 646.866 kb on - strand, within MCAODC_03215 at 646.866 kb on - strand, within MCAODC_03215 at 646.866 kb on - strand, within MCAODC_03215 at 646.866 kb on - strand, within MCAODC_03215 at 646.867 kb on + strand, within MCAODC_03215 at 646.867 kb on + strand, within MCAODC_03215 at 646.868 kb on - strand, within MCAODC_03215 at 646.868 kb on - strand, within MCAODC_03215 at 646.868 kb on - strand, within MCAODC_03215 at 646.965 kb on - strand, within MCAODC_03215 at 646.965 kb on - strand, within MCAODC_03215 at 647.027 kb on + strand, within MCAODC_03215 at 647.028 kb on - strand, within MCAODC_03215 at 647.093 kb on + strand, within MCAODC_03215 at 647.093 kb on + strand, within MCAODC_03215 at 647.094 kb on - strand, within MCAODC_03215 at 647.135 kb on - strand, within MCAODC_03215 at 647.135 kb on - strand, within MCAODC_03215 at 647.139 kb on + strand, within MCAODC_03215 at 647.139 kb on + strand, within MCAODC_03215 at 647.149 kb on + strand, within MCAODC_03215 at 647.161 kb on - strand, within MCAODC_03215 at 647.161 kb on - strand, within MCAODC_03215 at 647.207 kb on + strand, within MCAODC_03215 at 647.237 kb on + strand, within MCAODC_03215 at 647.237 kb on + strand, within MCAODC_03215 at 647.238 kb on - strand, within MCAODC_03215 at 647.280 kb on + strand, within MCAODC_03215 at 647.316 kb on + strand, within MCAODC_03215 at 647.316 kb on + strand, within MCAODC_03215 at 647.357 kb on + strand, within MCAODC_03215 at 647.357 kb on + strand, within MCAODC_03215 at 647.359 kb on + strand, within MCAODC_03215 at 647.360 kb on - strand, within MCAODC_03215 at 647.640 kb on + strand at 647.649 kb on + strand at 647.649 kb on + strand at 647.676 kb on + strand at 647.676 kb on + strand at 647.677 kb on - strand at 647.759 kb on - strand at 647.784 kb on - strand at 647.813 kb on + strand at 647.813 kb on + strand at 647.814 kb on - strand at 647.891 kb on + strand, within rbsA at 647.891 kb on + strand, within rbsA at 647.891 kb on + strand, within rbsA at 647.891 kb on + strand, within rbsA at 647.891 kb on + strand, within rbsA at 647.892 kb on - strand, within rbsA at 647.892 kb on - strand, within rbsA at 647.892 kb on - strand, within rbsA at 647.974 kb on + strand, within rbsA at 647.975 kb on - strand, within rbsA at 647.984 kb on + strand, within rbsA at 648.073 kb on + strand, within rbsA at 648.074 kb on - strand, within rbsA at 648.084 kb on + strand, within rbsA at 648.084 kb on + strand, within rbsA at 648.084 kb on + strand, within rbsA at 648.084 kb on + strand, within rbsA at 648.085 kb on - strand, within rbsA at 648.085 kb on - strand, within rbsA at 648.085 kb on - strand, within rbsA at 648.196 kb on - strand, within rbsA at 648.196 kb on - strand, within rbsA at 648.196 kb on - strand, within rbsA at 648.280 kb on + strand, within rbsA at 648.281 kb on - strand, within rbsA at 648.311 kb on - strand, within rbsA at 648.311 kb on - strand, within rbsA at 648.314 kb on + strand, within rbsA at 648.314 kb on + strand, within rbsA at 648.314 kb on + strand, within rbsA at 648.314 kb on + strand, within rbsA at 648.314 kb on + strand, within rbsA at 648.314 kb on + strand, within rbsA at 648.315 kb on - strand, within rbsA at 648.315 kb on - strand, within rbsA at 648.315 kb on - strand, within rbsA at 648.315 kb on - strand, within rbsA at 648.315 kb on - strand, within rbsA at 648.315 kb on - strand, within rbsA at 648.341 kb on + strand, within rbsA at 648.341 kb on + strand, within rbsA at 648.342 kb on - strand, within rbsA at 648.342 kb on - strand, within rbsA at 648.370 kb on - strand, within rbsA at 648.383 kb on + strand, within rbsA at 648.384 kb on - strand, within rbsA at 648.384 kb on - strand, within rbsA at 648.469 kb on + strand, within rbsA at 648.756 kb on + strand, within rbsA at 648.757 kb on - strand, within rbsA at 648.868 kb on + strand, within rbsA at 648.868 kb on + strand, within rbsA at 648.869 kb on - strand, within rbsA at 648.869 kb on - strand, within rbsA at 648.869 kb on - strand, within rbsA at 648.904 kb on - strand, within rbsA at 648.904 kb on - strand, within rbsA at 648.904 kb on - strand, within rbsA at 649.104 kb on + strand at 649.127 kb on + strand at 649.127 kb on + strand at 649.128 kb on - strand at 649.128 kb on - strand at 649.161 kb on + strand at 649.162 kb on - strand at 649.192 kb on + strand at 649.192 kb on + strand at 649.192 kb on + strand at 649.193 kb on - strand at 649.193 kb on - strand at 649.193 kb on - strand at 649.193 kb on - strand at 649.200 kb on + strand at 649.201 kb on - strand at 649.389 kb on + strand, within MCAODC_03225 at 649.522 kb on - strand, within MCAODC_03225 at 649.645 kb on + strand, within MCAODC_03225 at 649.645 kb on + strand, within MCAODC_03225 at 649.646 kb on - strand, within MCAODC_03225 at 649.646 kb on - strand, within MCAODC_03225 at 649.646 kb on - strand, within MCAODC_03225 at 649.648 kb on - strand, within MCAODC_03225 at 649.648 kb on - strand, within MCAODC_03225 at 649.695 kb on + strand, within MCAODC_03225 at 649.710 kb on + strand, within MCAODC_03225 at 649.735 kb on + strand, within MCAODC_03225 at 649.735 kb on + strand, within MCAODC_03225 at 649.735 kb on + strand, within MCAODC_03225 at 649.736 kb on - strand, within MCAODC_03225 at 649.736 kb on - strand, within MCAODC_03225 at 649.736 kb on - strand, within MCAODC_03225 at 649.736 kb on - strand, within MCAODC_03225 at 649.736 kb on - strand, within MCAODC_03225 at 649.736 kb on - strand, within MCAODC_03225 at 649.736 kb on - strand, within MCAODC_03225 at 649.827 kb on + strand, within MCAODC_03225 at 649.827 kb on + strand, within MCAODC_03225 at 649.828 kb on - strand, within MCAODC_03225 at 649.828 kb on - strand, within MCAODC_03225 at 649.828 kb on - strand, within MCAODC_03225 at 649.831 kb on + strand, within MCAODC_03225 at 649.831 kb on + strand, within MCAODC_03225 at 649.867 kb on - strand, within MCAODC_03225 at 649.867 kb on - strand, within MCAODC_03225 at 649.875 kb on + strand, within MCAODC_03225 at 649.875 kb on + strand, within MCAODC_03225 at 649.876 kb on - strand, within MCAODC_03225 at 649.904 kb on - strand, within MCAODC_03225 at 649.960 kb on + strand, within MCAODC_03225 at 649.979 kb on + strand, within MCAODC_03225 at 649.979 kb on + strand, within MCAODC_03225 at 649.980 kb on - strand, within MCAODC_03225 at 649.980 kb on - strand, within MCAODC_03225 at 649.980 kb on - strand, within MCAODC_03225 at 649.980 kb on - strand, within MCAODC_03225 at 650.081 kb on + strand, within MCAODC_03225 at 650.085 kb on + strand, within MCAODC_03225 at 650.128 kb on + strand at 650.128 kb on + strand at 650.128 kb on + strand at 650.129 kb on - strand at 650.129 kb on - strand at 650.189 kb on - strand at 650.230 kb on + strand at 650.231 kb on - strand at 650.231 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 646,766 - MCAODC_03215 0.63 -0.2 646,865 + MCAODC_03215 0.67 +0.0 646,865 + MCAODC_03215 0.67 +1.1 646,865 + MCAODC_03215 0.67 -0.0 646,866 - MCAODC_03215 0.67 +0.3 646,866 - MCAODC_03215 0.67 +0.3 646,866 - MCAODC_03215 0.67 -0.9 646,866 - MCAODC_03215 0.67 +0.4 646,866 - MCAODC_03215 0.67 +0.4 646,866 - MCAODC_03215 0.67 -0.3 646,866 - MCAODC_03215 0.67 +0.1 646,866 - MCAODC_03215 0.67 -1.4 646,867 + MCAODC_03215 0.67 -0.3 646,867 + MCAODC_03215 0.67 -0.8 646,868 - MCAODC_03215 0.67 +0.5 646,868 - MCAODC_03215 0.67 -0.1 646,868 - MCAODC_03215 0.67 +1.8 646,965 - MCAODC_03215 0.71 +0.3 646,965 - MCAODC_03215 0.71 +0.2 647,027 + MCAODC_03215 0.74 +1.3 647,028 - MCAODC_03215 0.74 -0.4 647,093 + MCAODC_03215 0.77 +0.5 647,093 + MCAODC_03215 0.77 -0.0 647,094 - MCAODC_03215 0.77 -2.1 647,135 - MCAODC_03215 0.79 +0.4 647,135 - MCAODC_03215 0.79 +0.1 647,139 + MCAODC_03215 0.79 +0.3 647,139 + MCAODC_03215 0.79 +0.2 647,149 + MCAODC_03215 0.80 -0.5 647,161 - MCAODC_03215 0.80 +0.4 647,161 - MCAODC_03215 0.80 -0.4 647,207 + MCAODC_03215 0.82 -1.1 647,237 + MCAODC_03215 0.83 -0.7 647,237 + MCAODC_03215 0.83 +0.8 647,238 - MCAODC_03215 0.83 +1.1 647,280 + MCAODC_03215 0.85 -0.5 647,316 + MCAODC_03215 0.87 +0.1 647,316 + MCAODC_03215 0.87 +0.1 647,357 + MCAODC_03215 0.89 +0.3 647,357 + MCAODC_03215 0.89 -0.1 647,359 + MCAODC_03215 0.89 +0.0 647,360 - MCAODC_03215 0.89 +0.2 647,640 + +0.1 647,649 + +0.5 647,649 + +0.9 647,676 + +0.5 647,676 + +0.6 647,677 - +0.2 647,759 - -0.3 647,784 - +0.1 647,813 + -0.4 647,813 + +0.2 647,814 - -1.0 647,891 + rbsA MCAODC_03220 0.11 -0.7 647,891 + rbsA MCAODC_03220 0.11 -0.3 647,891 + rbsA MCAODC_03220 0.11 -0.2 647,891 + rbsA MCAODC_03220 0.11 -1.8 647,891 + rbsA MCAODC_03220 0.11 +0.2 647,892 - rbsA MCAODC_03220 0.11 -1.3 647,892 - rbsA MCAODC_03220 0.11 -0.2 647,892 - rbsA MCAODC_03220 0.11 +0.5 647,974 + rbsA MCAODC_03220 0.16 -1.1 647,975 - rbsA MCAODC_03220 0.16 -0.9 647,984 + rbsA MCAODC_03220 0.17 -0.4 648,073 + rbsA MCAODC_03220 0.23 -0.7 648,074 - rbsA MCAODC_03220 0.23 -0.2 648,084 + rbsA MCAODC_03220 0.24 -1.4 648,084 + rbsA MCAODC_03220 0.24 -0.1 648,084 + rbsA MCAODC_03220 0.24 -0.8 648,084 + rbsA MCAODC_03220 0.24 -0.7 648,085 - rbsA MCAODC_03220 0.24 +1.0 648,085 - rbsA MCAODC_03220 0.24 +0.2 648,085 - rbsA MCAODC_03220 0.24 +0.7 648,196 - rbsA MCAODC_03220 0.31 +0.9 648,196 - rbsA MCAODC_03220 0.31 -0.4 648,196 - rbsA MCAODC_03220 0.31 -0.5 648,280 + rbsA MCAODC_03220 0.36 -0.8 648,281 - rbsA MCAODC_03220 0.36 +0.2 648,311 - rbsA MCAODC_03220 0.38 +0.2 648,311 - rbsA MCAODC_03220 0.38 +0.0 648,314 + rbsA MCAODC_03220 0.39 +0.6 648,314 + rbsA MCAODC_03220 0.39 -0.1 648,314 + rbsA MCAODC_03220 0.39 -1.2 648,314 + rbsA MCAODC_03220 0.39 -0.8 648,314 + rbsA MCAODC_03220 0.39 +0.7 648,314 + rbsA MCAODC_03220 0.39 +0.7 648,315 - rbsA MCAODC_03220 0.39 -0.6 648,315 - rbsA MCAODC_03220 0.39 +0.1 648,315 - rbsA MCAODC_03220 0.39 -2.1 648,315 - rbsA MCAODC_03220 0.39 -0.4 648,315 - rbsA MCAODC_03220 0.39 +0.9 648,315 - rbsA MCAODC_03220 0.39 +0.5 648,341 + rbsA MCAODC_03220 0.40 +0.2 648,341 + rbsA MCAODC_03220 0.40 +0.8 648,342 - rbsA MCAODC_03220 0.40 +0.3 648,342 - rbsA MCAODC_03220 0.40 +0.4 648,370 - rbsA MCAODC_03220 0.42 +0.3 648,383 + rbsA MCAODC_03220 0.43 -0.3 648,384 - rbsA MCAODC_03220 0.43 -0.4 648,384 - rbsA MCAODC_03220 0.43 +0.6 648,469 + rbsA MCAODC_03220 0.49 +0.5 648,756 + rbsA MCAODC_03220 0.68 +0.4 648,757 - rbsA MCAODC_03220 0.68 +0.7 648,868 + rbsA MCAODC_03220 0.75 -0.2 648,868 + rbsA MCAODC_03220 0.75 -0.3 648,869 - rbsA MCAODC_03220 0.75 +0.4 648,869 - rbsA MCAODC_03220 0.75 -2.1 648,869 - rbsA MCAODC_03220 0.75 -0.2 648,904 - rbsA MCAODC_03220 0.77 +0.6 648,904 - rbsA MCAODC_03220 0.77 -0.1 648,904 - rbsA MCAODC_03220 0.77 +0.4 649,104 + -0.3 649,127 + -0.3 649,127 + +1.3 649,128 - +0.1 649,128 - +0.9 649,161 + -0.6 649,162 - +1.0 649,192 + -0.4 649,192 + +0.8 649,192 + -0.1 649,193 - -1.5 649,193 - -1.7 649,193 - -0.1 649,193 - -0.8 649,200 + +1.5 649,201 - +0.6 649,389 + MCAODC_03225 0.15 -0.4 649,522 - MCAODC_03225 0.29 -0.2 649,645 + MCAODC_03225 0.41 -0.8 649,645 + MCAODC_03225 0.41 +0.3 649,646 - MCAODC_03225 0.41 +1.1 649,646 - MCAODC_03225 0.41 -0.6 649,646 - MCAODC_03225 0.41 +0.3 649,648 - MCAODC_03225 0.42 +0.0 649,648 - MCAODC_03225 0.42 -0.1 649,695 + MCAODC_03225 0.46 -0.7 649,710 + MCAODC_03225 0.48 +0.5 649,735 + MCAODC_03225 0.50 -0.3 649,735 + MCAODC_03225 0.50 -0.8 649,735 + MCAODC_03225 0.50 +0.2 649,736 - MCAODC_03225 0.51 -1.4 649,736 - MCAODC_03225 0.51 +0.9 649,736 - MCAODC_03225 0.51 +1.6 649,736 - MCAODC_03225 0.51 -0.6 649,736 - MCAODC_03225 0.51 +0.1 649,736 - MCAODC_03225 0.51 -1.6 649,736 - MCAODC_03225 0.51 -1.2 649,827 + MCAODC_03225 0.60 +0.5 649,827 + MCAODC_03225 0.60 +1.2 649,828 - MCAODC_03225 0.60 +0.4 649,828 - MCAODC_03225 0.60 -0.1 649,828 - MCAODC_03225 0.60 +0.1 649,831 + MCAODC_03225 0.60 -0.2 649,831 + MCAODC_03225 0.60 -0.4 649,867 - MCAODC_03225 0.64 -0.5 649,867 - MCAODC_03225 0.64 -0.4 649,875 + MCAODC_03225 0.65 -0.0 649,875 + MCAODC_03225 0.65 +0.4 649,876 - MCAODC_03225 0.65 -0.4 649,904 - MCAODC_03225 0.68 +0.6 649,960 + MCAODC_03225 0.74 +0.3 649,979 + MCAODC_03225 0.75 +0.9 649,979 + MCAODC_03225 0.75 +0.2 649,980 - MCAODC_03225 0.76 +0.7 649,980 - MCAODC_03225 0.76 -0.3 649,980 - MCAODC_03225 0.76 +0.4 649,980 - MCAODC_03225 0.76 +0.2 650,081 + MCAODC_03225 0.86 +0.9 650,085 + MCAODC_03225 0.86 +1.4 650,128 + -1.7 650,128 + +0.9 650,128 + -0.6 650,129 - +0.1 650,129 - +0.1 650,189 - +1.1 650,230 + +1.1 650,231 - +0.6 650,231 - +0.3
Or see this region's nucleotide sequence