Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rlmB and rnr are separated by 180 nucleotides rnr and nsrR are separated by 38 nucleotides nsrR and purA are separated by 204 nucleotides
MCAODC_02730: rlmB - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 550,332 to 551,063
rlmB
MCAODC_02735: rnr - ribonuclease R, at 551,244 to 553,685
rnr
MCAODC_02740: nsrR - nitric oxide-sensing transcriptional repressor NsrR, at 553,724 to 554,149
nsrR
MCAODC_02745: purA - adenylosuccinate synthase, at 554,354 to 555,652
purA
Position (kb) 551
552
553
554 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 550.278 kb on + strand at 550.278 kb on + strand at 550.280 kb on + strand at 550.461 kb on - strand, within rlmB at 550.516 kb on + strand, within rlmB at 550.523 kb on + strand, within rlmB at 550.523 kb on + strand, within rlmB at 550.523 kb on + strand, within rlmB at 550.523 kb on + strand, within rlmB at 550.524 kb on - strand, within rlmB at 550.560 kb on - strand, within rlmB at 550.577 kb on + strand, within rlmB at 550.577 kb on + strand, within rlmB at 550.577 kb on + strand, within rlmB at 550.577 kb on + strand, within rlmB at 550.577 kb on + strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.578 kb on - strand, within rlmB at 550.642 kb on - strand, within rlmB at 550.895 kb on - strand, within rlmB at 550.895 kb on - strand, within rlmB at 550.895 kb on - strand, within rlmB at 550.980 kb on + strand, within rlmB at 550.981 kb on - strand, within rlmB at 550.981 kb on - strand, within rlmB at 551.065 kb on - strand at 551.069 kb on + strand at 551.069 kb on + strand at 551.070 kb on - strand at 551.115 kb on - strand at 551.130 kb on + strand at 551.131 kb on - strand at 551.131 kb on - strand at 551.131 kb on - strand at 551.131 kb on - strand at 551.150 kb on - strand at 551.150 kb on - strand at 551.150 kb on - strand at 551.214 kb on + strand at 551.215 kb on - strand at 551.215 kb on - strand at 551.239 kb on - strand at 551.404 kb on - strand at 551.520 kb on - strand, within rnr at 551.543 kb on + strand, within rnr at 551.543 kb on + strand, within rnr at 551.543 kb on + strand, within rnr at 551.543 kb on + strand, within rnr at 551.543 kb on + strand, within rnr at 551.543 kb on + strand, within rnr at 551.543 kb on + strand, within rnr at 551.544 kb on - strand, within rnr at 551.544 kb on - strand, within rnr at 551.544 kb on - strand, within rnr at 551.544 kb on - strand, within rnr at 551.644 kb on + strand, within rnr at 551.645 kb on - strand, within rnr at 551.645 kb on - strand, within rnr at 551.744 kb on + strand, within rnr at 551.745 kb on - strand, within rnr at 551.753 kb on + strand, within rnr at 551.757 kb on + strand, within rnr at 551.758 kb on - strand, within rnr at 551.875 kb on + strand, within rnr at 551.882 kb on - strand, within rnr at 551.882 kb on - strand, within rnr at 551.940 kb on - strand, within rnr at 551.987 kb on + strand, within rnr at 551.987 kb on + strand, within rnr at 551.988 kb on - strand, within rnr at 551.999 kb on - strand, within rnr at 551.999 kb on - strand, within rnr at 551.999 kb on - strand, within rnr at 552.044 kb on - strand, within rnr at 552.130 kb on + strand, within rnr at 552.312 kb on + strand, within rnr at 552.313 kb on - strand, within rnr at 552.329 kb on + strand, within rnr at 552.488 kb on - strand, within rnr at 552.521 kb on + strand, within rnr at 552.521 kb on + strand, within rnr at 552.522 kb on - strand, within rnr at 552.539 kb on - strand, within rnr at 552.539 kb on - strand, within rnr at 552.629 kb on + strand, within rnr at 552.629 kb on + strand, within rnr at 552.630 kb on - strand, within rnr at 552.630 kb on - strand, within rnr at 552.642 kb on + strand, within rnr at 552.643 kb on - strand, within rnr at 552.715 kb on + strand, within rnr at 552.726 kb on - strand, within rnr at 552.772 kb on + strand, within rnr at 552.772 kb on + strand, within rnr at 552.772 kb on + strand, within rnr at 552.772 kb on + strand, within rnr at 552.772 kb on + strand, within rnr at 552.772 kb on + strand, within rnr at 552.772 kb on + strand, within rnr at 552.772 kb on + strand, within rnr at 552.773 kb on - strand, within rnr at 552.888 kb on + strand, within rnr at 552.983 kb on - strand, within rnr at 552.983 kb on - strand, within rnr at 553.035 kb on - strand, within rnr at 553.160 kb on + strand, within rnr at 553.178 kb on + strand, within rnr at 553.220 kb on - strand, within rnr at 553.286 kb on + strand, within rnr at 553.286 kb on + strand, within rnr at 553.361 kb on - strand, within rnr at 553.361 kb on - strand, within rnr at 553.374 kb on - strand, within rnr at 553.424 kb on + strand, within rnr at 553.424 kb on + strand, within rnr at 553.425 kb on - strand, within rnr at 553.460 kb on - strand at 553.476 kb on - strand at 553.603 kb on - strand at 553.629 kb on - strand at 553.646 kb on - strand at 553.740 kb on - strand at 553.785 kb on + strand, within nsrR at 553.785 kb on + strand, within nsrR at 553.785 kb on + strand, within nsrR at 553.785 kb on + strand, within nsrR at 553.789 kb on + strand, within nsrR at 553.790 kb on - strand, within nsrR at 553.822 kb on + strand, within nsrR at 553.823 kb on - strand, within nsrR at 553.855 kb on + strand, within nsrR at 553.855 kb on + strand, within nsrR at 553.855 kb on + strand, within nsrR at 553.855 kb on + strand, within nsrR at 553.855 kb on + strand, within nsrR at 553.856 kb on - strand, within nsrR at 553.856 kb on - strand, within nsrR at 553.856 kb on - strand, within nsrR at 553.856 kb on - strand, within nsrR at 553.924 kb on + strand, within nsrR at 553.924 kb on + strand, within nsrR at 553.925 kb on - strand, within nsrR at 553.925 kb on - strand, within nsrR at 553.925 kb on - strand, within nsrR at 553.925 kb on - strand, within nsrR at 553.946 kb on - strand, within nsrR at 554.015 kb on + strand, within nsrR at 554.016 kb on - strand, within nsrR at 554.026 kb on + strand, within nsrR at 554.026 kb on + strand, within nsrR at 554.026 kb on + strand, within nsrR at 554.027 kb on - strand, within nsrR at 554.027 kb on - strand, within nsrR at 554.027 kb on - strand, within nsrR at 554.027 kb on - strand, within nsrR at 554.032 kb on + strand, within nsrR at 554.032 kb on + strand, within nsrR at 554.033 kb on - strand, within nsrR at 554.103 kb on + strand, within nsrR at 554.103 kb on + strand, within nsrR at 554.103 kb on + strand, within nsrR at 554.103 kb on + strand, within nsrR at 554.104 kb on - strand, within nsrR at 554.104 kb on - strand, within nsrR at 554.104 kb on - strand, within nsrR at 554.117 kb on + strand at 554.118 kb on - strand at 554.118 kb on - strand at 554.141 kb on + strand at 554.142 kb on - strand at 554.180 kb on + strand at 554.181 kb on - strand at 554.186 kb on + strand at 554.186 kb on + strand at 554.186 kb on + strand at 554.186 kb on + strand at 554.186 kb on + strand at 554.186 kb on + strand at 554.186 kb on + strand at 554.187 kb on - strand at 554.187 kb on - strand at 554.187 kb on - strand at 554.187 kb on - strand at 554.187 kb on - strand at 554.189 kb on - strand at 554.189 kb on - strand at 554.189 kb on - strand at 554.260 kb on + strand at 554.261 kb on - strand at 554.261 kb on - strand at 554.280 kb on + strand at 554.280 kb on + strand at 554.281 kb on - strand at 554.306 kb on - strand at 554.317 kb on - strand at 554.333 kb on + strand at 554.334 kb on - strand at 554.355 kb on + strand at 554.356 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 550,278 + -1.6 550,278 + -1.2 550,280 + -0.2 550,461 - rlmB MCAODC_02730 0.18 -0.2 550,516 + rlmB MCAODC_02730 0.25 -0.7 550,523 + rlmB MCAODC_02730 0.26 +0.5 550,523 + rlmB MCAODC_02730 0.26 +0.6 550,523 + rlmB MCAODC_02730 0.26 -0.4 550,523 + rlmB MCAODC_02730 0.26 -0.0 550,524 - rlmB MCAODC_02730 0.26 -0.4 550,560 - rlmB MCAODC_02730 0.31 +0.5 550,577 + rlmB MCAODC_02730 0.33 +0.1 550,577 + rlmB MCAODC_02730 0.33 -0.9 550,577 + rlmB MCAODC_02730 0.33 +0.2 550,577 + rlmB MCAODC_02730 0.33 -0.5 550,577 + rlmB MCAODC_02730 0.33 -0.3 550,578 - rlmB MCAODC_02730 0.34 -0.4 550,578 - rlmB MCAODC_02730 0.34 +0.7 550,578 - rlmB MCAODC_02730 0.34 +0.1 550,578 - rlmB MCAODC_02730 0.34 +0.5 550,578 - rlmB MCAODC_02730 0.34 -1.0 550,578 - rlmB MCAODC_02730 0.34 +0.2 550,578 - rlmB MCAODC_02730 0.34 +0.1 550,642 - rlmB MCAODC_02730 0.42 +0.3 550,895 - rlmB MCAODC_02730 0.77 -1.4 550,895 - rlmB MCAODC_02730 0.77 +0.3 550,895 - rlmB MCAODC_02730 0.77 -0.7 550,980 + rlmB MCAODC_02730 0.89 +0.2 550,981 - rlmB MCAODC_02730 0.89 -0.3 550,981 - rlmB MCAODC_02730 0.89 +0.4 551,065 - +0.1 551,069 + -1.0 551,069 + +1.5 551,070 - +0.2 551,115 - -0.1 551,130 + +0.8 551,131 - +0.0 551,131 - -0.1 551,131 - -0.7 551,131 - -0.3 551,150 - +0.6 551,150 - -0.4 551,150 - -0.9 551,214 + -0.6 551,215 - -0.6 551,215 - +0.2 551,239 - -0.3 551,404 - -1.0 551,520 - rnr MCAODC_02735 0.11 +0.5 551,543 + rnr MCAODC_02735 0.12 -0.7 551,543 + rnr MCAODC_02735 0.12 +0.8 551,543 + rnr MCAODC_02735 0.12 -0.9 551,543 + rnr MCAODC_02735 0.12 +0.6 551,543 + rnr MCAODC_02735 0.12 -0.6 551,543 + rnr MCAODC_02735 0.12 -1.2 551,543 + rnr MCAODC_02735 0.12 +0.3 551,544 - rnr MCAODC_02735 0.12 +0.2 551,544 - rnr MCAODC_02735 0.12 +0.7 551,544 - rnr MCAODC_02735 0.12 +0.0 551,544 - rnr MCAODC_02735 0.12 +1.5 551,644 + rnr MCAODC_02735 0.16 -2.3 551,645 - rnr MCAODC_02735 0.16 -0.1 551,645 - rnr MCAODC_02735 0.16 -1.1 551,744 + rnr MCAODC_02735 0.20 +1.2 551,745 - rnr MCAODC_02735 0.21 -0.6 551,753 + rnr MCAODC_02735 0.21 -2.1 551,757 + rnr MCAODC_02735 0.21 -1.4 551,758 - rnr MCAODC_02735 0.21 -1.7 551,875 + rnr MCAODC_02735 0.26 +0.0 551,882 - rnr MCAODC_02735 0.26 +2.3 551,882 - rnr MCAODC_02735 0.26 +0.4 551,940 - rnr MCAODC_02735 0.29 -1.3 551,987 + rnr MCAODC_02735 0.30 +0.2 551,987 + rnr MCAODC_02735 0.30 -1.2 551,988 - rnr MCAODC_02735 0.30 -0.3 551,999 - rnr MCAODC_02735 0.31 -1.4 551,999 - rnr MCAODC_02735 0.31 +0.1 551,999 - rnr MCAODC_02735 0.31 +0.2 552,044 - rnr MCAODC_02735 0.33 +0.2 552,130 + rnr MCAODC_02735 0.36 +0.1 552,312 + rnr MCAODC_02735 0.44 -0.5 552,313 - rnr MCAODC_02735 0.44 -1.1 552,329 + rnr MCAODC_02735 0.44 -1.0 552,488 - rnr MCAODC_02735 0.51 -0.9 552,521 + rnr MCAODC_02735 0.52 -0.3 552,521 + rnr MCAODC_02735 0.52 -0.9 552,522 - rnr MCAODC_02735 0.52 -2.2 552,539 - rnr MCAODC_02735 0.53 +0.0 552,539 - rnr MCAODC_02735 0.53 -2.0 552,629 + rnr MCAODC_02735 0.57 -1.7 552,629 + rnr MCAODC_02735 0.57 +0.1 552,630 - rnr MCAODC_02735 0.57 -1.8 552,630 - rnr MCAODC_02735 0.57 -0.3 552,642 + rnr MCAODC_02735 0.57 -1.1 552,643 - rnr MCAODC_02735 0.57 -0.2 552,715 + rnr MCAODC_02735 0.60 -0.4 552,726 - rnr MCAODC_02735 0.61 -0.5 552,772 + rnr MCAODC_02735 0.63 +0.5 552,772 + rnr MCAODC_02735 0.63 +0.3 552,772 + rnr MCAODC_02735 0.63 -0.1 552,772 + rnr MCAODC_02735 0.63 -1.4 552,772 + rnr MCAODC_02735 0.63 -0.4 552,772 + rnr MCAODC_02735 0.63 -0.2 552,772 + rnr MCAODC_02735 0.63 -0.4 552,772 + rnr MCAODC_02735 0.63 -0.1 552,773 - rnr MCAODC_02735 0.63 -0.3 552,888 + rnr MCAODC_02735 0.67 +0.3 552,983 - rnr MCAODC_02735 0.71 +0.4 552,983 - rnr MCAODC_02735 0.71 +1.1 553,035 - rnr MCAODC_02735 0.73 -0.2 553,160 + rnr MCAODC_02735 0.78 +0.0 553,178 + rnr MCAODC_02735 0.79 -1.1 553,220 - rnr MCAODC_02735 0.81 -1.0 553,286 + rnr MCAODC_02735 0.84 +0.4 553,286 + rnr MCAODC_02735 0.84 -1.4 553,361 - rnr MCAODC_02735 0.87 +0.2 553,361 - rnr MCAODC_02735 0.87 +2.2 553,374 - rnr MCAODC_02735 0.87 -2.6 553,424 + rnr MCAODC_02735 0.89 -0.3 553,424 + rnr MCAODC_02735 0.89 +0.4 553,425 - rnr MCAODC_02735 0.89 +0.7 553,460 - -1.1 553,476 - -0.4 553,603 - -1.9 553,629 - +2.2 553,646 - -1.0 553,740 - -0.2 553,785 + nsrR MCAODC_02740 0.14 +1.7 553,785 + nsrR MCAODC_02740 0.14 -2.1 553,785 + nsrR MCAODC_02740 0.14 -0.5 553,785 + nsrR MCAODC_02740 0.14 -3.1 553,789 + nsrR MCAODC_02740 0.15 +1.1 553,790 - nsrR MCAODC_02740 0.15 -0.1 553,822 + nsrR MCAODC_02740 0.23 -1.1 553,823 - nsrR MCAODC_02740 0.23 -0.1 553,855 + nsrR MCAODC_02740 0.31 -0.1 553,855 + nsrR MCAODC_02740 0.31 -0.9 553,855 + nsrR MCAODC_02740 0.31 -1.5 553,855 + nsrR MCAODC_02740 0.31 +0.8 553,855 + nsrR MCAODC_02740 0.31 +0.3 553,856 - nsrR MCAODC_02740 0.31 -0.3 553,856 - nsrR MCAODC_02740 0.31 -1.5 553,856 - nsrR MCAODC_02740 0.31 +1.7 553,856 - nsrR MCAODC_02740 0.31 -0.6 553,924 + nsrR MCAODC_02740 0.47 +0.4 553,924 + nsrR MCAODC_02740 0.47 +0.3 553,925 - nsrR MCAODC_02740 0.47 -1.2 553,925 - nsrR MCAODC_02740 0.47 +0.2 553,925 - nsrR MCAODC_02740 0.47 -0.1 553,925 - nsrR MCAODC_02740 0.47 +0.5 553,946 - nsrR MCAODC_02740 0.52 +2.1 554,015 + nsrR MCAODC_02740 0.68 -2.0 554,016 - nsrR MCAODC_02740 0.69 +0.9 554,026 + nsrR MCAODC_02740 0.71 -0.6 554,026 + nsrR MCAODC_02740 0.71 -1.0 554,026 + nsrR MCAODC_02740 0.71 -0.1 554,027 - nsrR MCAODC_02740 0.71 -1.1 554,027 - nsrR MCAODC_02740 0.71 -1.1 554,027 - nsrR MCAODC_02740 0.71 +0.1 554,027 - nsrR MCAODC_02740 0.71 -1.6 554,032 + nsrR MCAODC_02740 0.72 +1.2 554,032 + nsrR MCAODC_02740 0.72 +0.9 554,033 - nsrR MCAODC_02740 0.73 -0.7 554,103 + nsrR MCAODC_02740 0.89 -0.6 554,103 + nsrR MCAODC_02740 0.89 -0.1 554,103 + nsrR MCAODC_02740 0.89 -0.7 554,103 + nsrR MCAODC_02740 0.89 -0.6 554,104 - nsrR MCAODC_02740 0.89 -0.5 554,104 - nsrR MCAODC_02740 0.89 -0.9 554,104 - nsrR MCAODC_02740 0.89 -1.1 554,117 + -1.2 554,118 - +0.1 554,118 - +0.8 554,141 + -1.1 554,142 - -0.3 554,180 + -0.5 554,181 - +0.6 554,186 + +0.2 554,186 + -0.4 554,186 + -0.1 554,186 + -0.5 554,186 + +0.9 554,186 + +0.2 554,186 + -1.9 554,187 - -0.9 554,187 - -0.3 554,187 - -0.1 554,187 - -0.4 554,187 - -0.9 554,189 - -1.1 554,189 - -0.5 554,189 - -0.2 554,260 + -1.1 554,261 - -1.2 554,261 - -0.2 554,280 + -0.9 554,280 + -0.3 554,281 - -1.1 554,306 - +0.6 554,317 - +0.9 554,333 + +0.7 554,334 - -2.2 554,355 + +0.0 554,356 - -0.9
Or see this region's nucleotide sequence