Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjfZ and rplI are separated by 70 nucleotides rplI and rpsR are separated by 41 nucleotides rpsR and priB are separated by 4 nucleotides priB and rpsF are separated by 6 nucleotides rpsF and yjfY are separated by 326 nucleotides
MCAODC_02610: yjfZ - Uncharacterized protein YjfZ, at 533,154 to 533,711
yjfZ
MCAODC_02615: rplI - 50S ribosomal protein L9, at 533,782 to 534,231
rplI
MCAODC_02620: rpsR - 30S ribosomal protein S18, at 534,273 to 534,500
rpsR
MCAODC_02625: priB - primosomal replication protein N, at 534,505 to 534,819
priB
MCAODC_02630: rpsF - 30S ribosomal protein S6, at 534,826 to 535,221
rpsF
MCAODC_02635: yjfY - Uncharacterized protein YjfY, at 535,548 to 535,823
yjfY
Position (kb) 534
535 Strain fitness (log2 ratio) -2
-1
0
1
2 at 533.527 kb on + strand, within yjfZ at 533.636 kb on + strand, within yjfZ at 533.636 kb on + strand, within yjfZ at 533.637 kb on - strand, within yjfZ at 533.637 kb on - strand, within yjfZ at 533.637 kb on - strand, within yjfZ at 533.640 kb on + strand, within yjfZ at 533.640 kb on + strand, within yjfZ at 533.640 kb on + strand, within yjfZ at 533.641 kb on - strand, within yjfZ at 533.641 kb on - strand, within yjfZ at 533.644 kb on + strand, within yjfZ at 533.709 kb on + strand at 533.710 kb on - strand at 533.712 kb on + strand at 533.726 kb on + strand at 533.762 kb on - strand at 534.254 kb on - strand at 535.391 kb on - strand at 535.474 kb on + strand at 535.543 kb on + strand at 535.543 kb on + strand at 535.543 kb on + strand at 535.543 kb on + strand at 535.544 kb on - strand at 535.544 kb on - strand at 535.544 kb on - strand at 535.547 kb on + strand at 535.547 kb on + strand at 535.547 kb on + strand at 535.547 kb on + strand at 535.548 kb on - strand at 535.548 kb on - strand at 535.548 kb on - strand at 535.548 kb on - strand at 535.548 kb on - strand at 535.548 kb on - strand at 535.548 kb on - strand at 535.565 kb on - strand at 535.598 kb on + strand, within yjfY at 535.598 kb on + strand, within yjfY at 535.599 kb on - strand, within yjfY at 535.599 kb on - strand, within yjfY at 535.599 kb on - strand, within yjfY at 535.599 kb on - strand, within yjfY at 535.619 kb on + strand, within yjfY at 535.620 kb on - strand, within yjfY at 535.640 kb on + strand, within yjfY at 535.641 kb on - strand, within yjfY at 535.671 kb on + strand, within yjfY at 535.672 kb on - strand, within yjfY at 535.672 kb on - strand, within yjfY at 535.672 kb on - strand, within yjfY at 535.674 kb on - strand, within yjfY at 535.674 kb on - strand, within yjfY at 535.683 kb on - strand, within yjfY at 535.718 kb on - strand, within yjfY at 535.749 kb on + strand, within yjfY at 535.749 kb on + strand, within yjfY at 535.750 kb on - strand, within yjfY at 535.750 kb on - strand, within yjfY at 535.752 kb on + strand, within yjfY at 535.752 kb on + strand, within yjfY at 535.752 kb on + strand, within yjfY at 535.753 kb on - strand, within yjfY at 535.753 kb on - strand, within yjfY at 535.753 kb on - strand, within yjfY at 535.753 kb on - strand, within yjfY at 535.753 kb on - strand, within yjfY at 535.759 kb on + strand, within yjfY at 535.785 kb on - strand, within yjfY at 535.793 kb on + strand, within yjfY at 535.793 kb on + strand, within yjfY at 535.793 kb on + strand, within yjfY at 535.793 kb on + strand, within yjfY at 535.794 kb on - strand, within yjfY at 535.794 kb on - strand, within yjfY at 535.811 kb on + strand at 535.815 kb on + strand at 535.815 kb on + strand at 535.816 kb on - strand at 535.816 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 533,527 + yjfZ MCAODC_02610 0.67 +0.1 533,636 + yjfZ MCAODC_02610 0.86 -0.8 533,636 + yjfZ MCAODC_02610 0.86 +1.3 533,637 - yjfZ MCAODC_02610 0.87 -1.8 533,637 - yjfZ MCAODC_02610 0.87 +0.7 533,637 - yjfZ MCAODC_02610 0.87 +1.1 533,640 + yjfZ MCAODC_02610 0.87 -0.5 533,640 + yjfZ MCAODC_02610 0.87 +0.9 533,640 + yjfZ MCAODC_02610 0.87 +0.2 533,641 - yjfZ MCAODC_02610 0.87 -1.5 533,641 - yjfZ MCAODC_02610 0.87 +0.5 533,644 + yjfZ MCAODC_02610 0.88 +0.2 533,709 + -0.4 533,710 - -1.4 533,712 + -2.0 533,726 + -0.5 533,762 - -0.4 534,254 - -0.4 535,391 - -0.3 535,474 + +0.7 535,543 + +0.8 535,543 + -1.9 535,543 + -0.2 535,543 + +0.6 535,544 - +0.1 535,544 - +0.5 535,544 - +0.7 535,547 + -0.2 535,547 + +0.0 535,547 + -0.6 535,547 + +0.8 535,548 - -0.2 535,548 - +0.7 535,548 - -0.8 535,548 - -1.0 535,548 - -1.5 535,548 - +0.7 535,548 - -0.2 535,565 - +0.1 535,598 + yjfY MCAODC_02635 0.18 +0.3 535,598 + yjfY MCAODC_02635 0.18 +2.5 535,599 - yjfY MCAODC_02635 0.18 +0.3 535,599 - yjfY MCAODC_02635 0.18 +0.3 535,599 - yjfY MCAODC_02635 0.18 -0.1 535,599 - yjfY MCAODC_02635 0.18 +0.1 535,619 + yjfY MCAODC_02635 0.26 +0.9 535,620 - yjfY MCAODC_02635 0.26 -0.4 535,640 + yjfY MCAODC_02635 0.33 +0.1 535,641 - yjfY MCAODC_02635 0.34 +0.0 535,671 + yjfY MCAODC_02635 0.45 -0.2 535,672 - yjfY MCAODC_02635 0.45 +1.1 535,672 - yjfY MCAODC_02635 0.45 -0.3 535,672 - yjfY MCAODC_02635 0.45 -0.4 535,674 - yjfY MCAODC_02635 0.46 -0.8 535,674 - yjfY MCAODC_02635 0.46 +0.7 535,683 - yjfY MCAODC_02635 0.49 +0.6 535,718 - yjfY MCAODC_02635 0.62 +0.3 535,749 + yjfY MCAODC_02635 0.73 -1.0 535,749 + yjfY MCAODC_02635 0.73 -0.0 535,750 - yjfY MCAODC_02635 0.73 +1.8 535,750 - yjfY MCAODC_02635 0.73 -0.3 535,752 + yjfY MCAODC_02635 0.74 +0.6 535,752 + yjfY MCAODC_02635 0.74 +0.3 535,752 + yjfY MCAODC_02635 0.74 +0.0 535,753 - yjfY MCAODC_02635 0.74 +0.6 535,753 - yjfY MCAODC_02635 0.74 +0.2 535,753 - yjfY MCAODC_02635 0.74 -0.8 535,753 - yjfY MCAODC_02635 0.74 -1.1 535,753 - yjfY MCAODC_02635 0.74 -1.1 535,759 + yjfY MCAODC_02635 0.76 +0.8 535,785 - yjfY MCAODC_02635 0.86 +0.7 535,793 + yjfY MCAODC_02635 0.89 -0.0 535,793 + yjfY MCAODC_02635 0.89 -0.4 535,793 + yjfY MCAODC_02635 0.89 -0.3 535,793 + yjfY MCAODC_02635 0.89 -1.2 535,794 - yjfY MCAODC_02635 0.89 -0.7 535,794 - yjfY MCAODC_02635 0.89 +0.7 535,811 + -0.7 535,815 + +0.1 535,815 + -0.7 535,816 - -0.3 535,816 - +0.3
Or see this region's nucleotide sequence