Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt qorB and ytfF are separated by 107 nucleotides ytfF and ytfE are separated by 107 nucleotides ytfE and cycA are separated by 44 nucleotides
MCAODC_02570: qorB - NAD(P)H:quinone oxidoreductase, at 524,567 to 525,427
qorB
MCAODC_02575: ytfF - Inner membrane protein YtfF, at 525,535 to 526,500
ytfF
MCAODC_02580: ytfE - iron-sulfur cluster repair protein YtfE, at 526,608 to 527,270
ytfE
MCAODC_02585: cycA - D-serine/D-alanine/glycine transporter, at 527,315 to 528,727
cycA
Position (kb) 525
526
527 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 524.575 kb on + strand at 524.575 kb on + strand at 524.576 kb on - strand at 524.578 kb on + strand at 524.579 kb on - strand at 524.607 kb on - strand at 524.607 kb on - strand at 524.723 kb on + strand, within qorB at 524.724 kb on - strand, within qorB at 524.724 kb on - strand, within qorB at 524.772 kb on + strand, within qorB at 524.821 kb on + strand, within qorB at 524.821 kb on + strand, within qorB at 524.821 kb on + strand, within qorB at 524.821 kb on + strand, within qorB at 524.822 kb on - strand, within qorB at 524.827 kb on + strand, within qorB at 524.828 kb on - strand, within qorB at 524.828 kb on - strand, within qorB at 524.828 kb on - strand, within qorB at 524.828 kb on - strand, within qorB at 524.830 kb on + strand, within qorB at 524.867 kb on + strand, within qorB at 524.868 kb on - strand, within qorB at 524.868 kb on - strand, within qorB at 524.868 kb on - strand, within qorB at 524.869 kb on + strand, within qorB at 524.869 kb on + strand, within qorB at 524.870 kb on - strand, within qorB at 524.870 kb on - strand, within qorB at 524.890 kb on + strand, within qorB at 524.960 kb on + strand, within qorB at 524.960 kb on + strand, within qorB at 524.960 kb on + strand, within qorB at 524.960 kb on + strand, within qorB at 524.961 kb on - strand, within qorB at 524.984 kb on + strand, within qorB at 525.033 kb on + strand, within qorB at 525.034 kb on - strand, within qorB at 525.034 kb on - strand, within qorB at 525.112 kb on + strand, within qorB at 525.140 kb on + strand, within qorB at 525.158 kb on - strand, within qorB at 525.217 kb on + strand, within qorB at 525.218 kb on - strand, within qorB at 525.293 kb on - strand, within qorB at 525.355 kb on + strand at 525.355 kb on + strand at 525.355 kb on + strand at 525.356 kb on - strand at 525.400 kb on - strand at 525.400 kb on - strand at 525.425 kb on + strand at 525.426 kb on - strand at 525.433 kb on + strand at 525.434 kb on - strand at 525.533 kb on + strand at 525.534 kb on - strand at 525.554 kb on - strand at 525.563 kb on + strand at 525.563 kb on + strand at 525.656 kb on + strand, within ytfF at 525.747 kb on + strand, within ytfF at 525.747 kb on + strand, within ytfF at 525.748 kb on - strand, within ytfF at 525.748 kb on - strand, within ytfF at 525.766 kb on + strand, within ytfF at 525.767 kb on - strand, within ytfF at 525.767 kb on - strand, within ytfF at 525.767 kb on - strand, within ytfF at 525.770 kb on - strand, within ytfF at 525.770 kb on - strand, within ytfF at 525.798 kb on + strand, within ytfF at 525.871 kb on + strand, within ytfF at 525.871 kb on + strand, within ytfF at 525.954 kb on + strand, within ytfF at 525.954 kb on + strand, within ytfF at 525.955 kb on - strand, within ytfF at 525.966 kb on - strand, within ytfF at 526.001 kb on - strand, within ytfF at 526.002 kb on + strand, within ytfF at 526.002 kb on + strand, within ytfF at 526.002 kb on + strand, within ytfF at 526.002 kb on + strand, within ytfF at 526.002 kb on + strand, within ytfF at 526.003 kb on - strand, within ytfF at 526.003 kb on - strand, within ytfF at 526.026 kb on - strand, within ytfF at 526.051 kb on + strand, within ytfF at 526.233 kb on + strand, within ytfF at 526.233 kb on + strand, within ytfF at 526.233 kb on + strand, within ytfF at 526.234 kb on - strand, within ytfF at 526.234 kb on - strand, within ytfF at 526.234 kb on - strand, within ytfF at 526.234 kb on - strand, within ytfF at 526.366 kb on + strand, within ytfF at 526.367 kb on - strand, within ytfF at 526.522 kb on - strand at 526.532 kb on + strand at 526.533 kb on - strand at 526.536 kb on + strand at 526.543 kb on + strand at 526.587 kb on - strand at 526.589 kb on + strand at 526.589 kb on + strand at 526.590 kb on - strand at 526.607 kb on + strand at 526.607 kb on + strand at 526.608 kb on - strand at 526.608 kb on - strand at 526.630 kb on + strand at 526.630 kb on + strand at 526.630 kb on + strand at 526.631 kb on - strand at 526.649 kb on + strand at 526.650 kb on - strand at 526.677 kb on - strand, within ytfE at 526.680 kb on + strand, within ytfE at 526.680 kb on + strand, within ytfE at 526.680 kb on + strand, within ytfE at 526.680 kb on + strand, within ytfE at 526.680 kb on + strand, within ytfE at 526.681 kb on - strand, within ytfE at 526.681 kb on - strand, within ytfE at 526.681 kb on - strand, within ytfE at 526.692 kb on + strand, within ytfE at 526.736 kb on + strand, within ytfE at 526.736 kb on + strand, within ytfE at 526.841 kb on + strand, within ytfE at 526.842 kb on - strand, within ytfE at 527.072 kb on - strand, within ytfE at 527.126 kb on + strand, within ytfE at 527.127 kb on - strand, within ytfE at 527.132 kb on + strand, within ytfE at 527.178 kb on + strand, within ytfE at 527.178 kb on + strand, within ytfE at 527.178 kb on + strand, within ytfE at 527.178 kb on + strand, within ytfE at 527.178 kb on + strand, within ytfE at 527.178 kb on + strand, within ytfE at 527.178 kb on + strand, within ytfE at 527.178 kb on + strand, within ytfE at 527.179 kb on - strand, within ytfE at 527.179 kb on - strand, within ytfE at 527.190 kb on - strand, within ytfE at 527.190 kb on - strand, within ytfE at 527.239 kb on + strand at 527.239 kb on + strand at 527.239 kb on + strand at 527.239 kb on + strand at 527.240 kb on - strand at 527.240 kb on - strand at 527.273 kb on + strand at 527.307 kb on + strand at 527.308 kb on - strand at 527.308 kb on - strand at 527.308 kb on - strand at 527.308 kb on - strand at 527.344 kb on + strand at 527.345 kb on - strand at 527.350 kb on + strand at 527.461 kb on + strand, within cycA at 527.461 kb on + strand, within cycA at 527.461 kb on + strand, within cycA at 527.461 kb on + strand, within cycA at 527.462 kb on - strand, within cycA at 527.462 kb on - strand, within cycA at 527.465 kb on + strand, within cycA at 527.465 kb on + strand, within cycA at 527.465 kb on + strand, within cycA at 527.466 kb on - strand, within cycA at 527.499 kb on + strand, within cycA at 527.500 kb on - strand, within cycA at 527.500 kb on - strand, within cycA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 524,575 + +0.7 524,575 + -0.5 524,576 - -0.7 524,578 + -0.3 524,579 - -0.2 524,607 - -0.0 524,607 - -0.5 524,723 + qorB MCAODC_02570 0.18 +0.5 524,724 - qorB MCAODC_02570 0.18 -0.2 524,724 - qorB MCAODC_02570 0.18 +1.0 524,772 + qorB MCAODC_02570 0.24 +0.3 524,821 + qorB MCAODC_02570 0.30 +0.7 524,821 + qorB MCAODC_02570 0.30 -1.1 524,821 + qorB MCAODC_02570 0.30 +0.8 524,821 + qorB MCAODC_02570 0.30 +1.2 524,822 - qorB MCAODC_02570 0.30 +0.3 524,827 + qorB MCAODC_02570 0.30 +1.1 524,828 - qorB MCAODC_02570 0.30 +0.7 524,828 - qorB MCAODC_02570 0.30 +1.3 524,828 - qorB MCAODC_02570 0.30 -1.6 524,828 - qorB MCAODC_02570 0.30 -0.6 524,830 + qorB MCAODC_02570 0.31 +0.1 524,867 + qorB MCAODC_02570 0.35 +0.1 524,868 - qorB MCAODC_02570 0.35 +1.3 524,868 - qorB MCAODC_02570 0.35 -0.1 524,868 - qorB MCAODC_02570 0.35 -0.6 524,869 + qorB MCAODC_02570 0.35 +0.4 524,869 + qorB MCAODC_02570 0.35 +0.4 524,870 - qorB MCAODC_02570 0.35 -0.3 524,870 - qorB MCAODC_02570 0.35 -0.4 524,890 + qorB MCAODC_02570 0.38 -0.2 524,960 + qorB MCAODC_02570 0.46 -0.1 524,960 + qorB MCAODC_02570 0.46 +0.1 524,960 + qorB MCAODC_02570 0.46 -0.5 524,960 + qorB MCAODC_02570 0.46 +0.5 524,961 - qorB MCAODC_02570 0.46 -1.6 524,984 + qorB MCAODC_02570 0.48 -0.1 525,033 + qorB MCAODC_02570 0.54 -0.7 525,034 - qorB MCAODC_02570 0.54 -0.4 525,034 - qorB MCAODC_02570 0.54 +0.4 525,112 + qorB MCAODC_02570 0.63 +0.6 525,140 + qorB MCAODC_02570 0.67 -0.3 525,158 - qorB MCAODC_02570 0.69 -0.4 525,217 + qorB MCAODC_02570 0.75 +2.8 525,218 - qorB MCAODC_02570 0.76 +0.7 525,293 - qorB MCAODC_02570 0.84 -0.3 525,355 + +0.1 525,355 + +1.2 525,355 + -2.5 525,356 - +1.4 525,400 - -0.3 525,400 - -1.5 525,425 + +0.8 525,426 - -0.3 525,433 + -1.4 525,434 - +0.7 525,533 + +0.3 525,534 - +1.1 525,554 - -0.5 525,563 + +0.8 525,563 + -0.2 525,656 + ytfF MCAODC_02575 0.13 +1.5 525,747 + ytfF MCAODC_02575 0.22 +2.5 525,747 + ytfF MCAODC_02575 0.22 -0.3 525,748 - ytfF MCAODC_02575 0.22 -0.4 525,748 - ytfF MCAODC_02575 0.22 -1.7 525,766 + ytfF MCAODC_02575 0.24 +0.6 525,767 - ytfF MCAODC_02575 0.24 +0.3 525,767 - ytfF MCAODC_02575 0.24 +1.9 525,767 - ytfF MCAODC_02575 0.24 +0.5 525,770 - ytfF MCAODC_02575 0.24 -0.6 525,770 - ytfF MCAODC_02575 0.24 -0.2 525,798 + ytfF MCAODC_02575 0.27 -0.7 525,871 + ytfF MCAODC_02575 0.35 +0.6 525,871 + ytfF MCAODC_02575 0.35 -0.3 525,954 + ytfF MCAODC_02575 0.43 +0.2 525,954 + ytfF MCAODC_02575 0.43 -0.5 525,955 - ytfF MCAODC_02575 0.43 +0.8 525,966 - ytfF MCAODC_02575 0.45 +1.9 526,001 - ytfF MCAODC_02575 0.48 +0.1 526,002 + ytfF MCAODC_02575 0.48 -0.2 526,002 + ytfF MCAODC_02575 0.48 +0.1 526,002 + ytfF MCAODC_02575 0.48 +0.9 526,002 + ytfF MCAODC_02575 0.48 +1.0 526,002 + ytfF MCAODC_02575 0.48 +0.1 526,003 - ytfF MCAODC_02575 0.48 -0.6 526,003 - ytfF MCAODC_02575 0.48 +0.2 526,026 - ytfF MCAODC_02575 0.51 +0.0 526,051 + ytfF MCAODC_02575 0.53 +0.4 526,233 + ytfF MCAODC_02575 0.72 -1.5 526,233 + ytfF MCAODC_02575 0.72 +1.0 526,233 + ytfF MCAODC_02575 0.72 -0.7 526,234 - ytfF MCAODC_02575 0.72 +1.5 526,234 - ytfF MCAODC_02575 0.72 +0.2 526,234 - ytfF MCAODC_02575 0.72 -0.7 526,234 - ytfF MCAODC_02575 0.72 +0.2 526,366 + ytfF MCAODC_02575 0.86 +0.1 526,367 - ytfF MCAODC_02575 0.86 -0.9 526,522 - +0.1 526,532 + -0.2 526,533 - +0.4 526,536 + +0.0 526,543 + +0.4 526,587 - +0.3 526,589 + -0.4 526,589 + -0.3 526,590 - +0.6 526,607 + -0.2 526,607 + +4.2 526,608 - -0.3 526,608 - -0.8 526,630 + +0.5 526,630 + +0.7 526,630 + -0.5 526,631 - -0.3 526,649 + +0.3 526,650 - +1.9 526,677 - ytfE MCAODC_02580 0.10 -1.1 526,680 + ytfE MCAODC_02580 0.11 +0.5 526,680 + ytfE MCAODC_02580 0.11 -0.5 526,680 + ytfE MCAODC_02580 0.11 +0.9 526,680 + ytfE MCAODC_02580 0.11 +0.5 526,680 + ytfE MCAODC_02580 0.11 +0.3 526,681 - ytfE MCAODC_02580 0.11 +0.2 526,681 - ytfE MCAODC_02580 0.11 -1.0 526,681 - ytfE MCAODC_02580 0.11 +0.7 526,692 + ytfE MCAODC_02580 0.13 +0.3 526,736 + ytfE MCAODC_02580 0.19 +0.7 526,736 + ytfE MCAODC_02580 0.19 -0.7 526,841 + ytfE MCAODC_02580 0.35 +0.5 526,842 - ytfE MCAODC_02580 0.35 -0.6 527,072 - ytfE MCAODC_02580 0.70 +1.6 527,126 + ytfE MCAODC_02580 0.78 +0.2 527,127 - ytfE MCAODC_02580 0.78 +1.2 527,132 + ytfE MCAODC_02580 0.79 -0.9 527,178 + ytfE MCAODC_02580 0.86 +0.0 527,178 + ytfE MCAODC_02580 0.86 +0.3 527,178 + ytfE MCAODC_02580 0.86 +0.2 527,178 + ytfE MCAODC_02580 0.86 +0.1 527,178 + ytfE MCAODC_02580 0.86 -1.1 527,178 + ytfE MCAODC_02580 0.86 +0.0 527,178 + ytfE MCAODC_02580 0.86 +0.3 527,178 + ytfE MCAODC_02580 0.86 -1.2 527,179 - ytfE MCAODC_02580 0.86 -0.2 527,179 - ytfE MCAODC_02580 0.86 -0.6 527,190 - ytfE MCAODC_02580 0.88 +0.3 527,190 - ytfE MCAODC_02580 0.88 -0.1 527,239 + -0.6 527,239 + +0.5 527,239 + -0.3 527,239 + -0.8 527,240 - -0.1 527,240 - -0.0 527,273 + -0.1 527,307 + -0.1 527,308 - +0.3 527,308 - +1.4 527,308 - +1.6 527,308 - -0.2 527,344 + -0.3 527,345 - -0.4 527,350 + -1.6 527,461 + cycA MCAODC_02585 0.10 +1.8 527,461 + cycA MCAODC_02585 0.10 -0.0 527,461 + cycA MCAODC_02585 0.10 -0.8 527,461 + cycA MCAODC_02585 0.10 -0.1 527,462 - cycA MCAODC_02585 0.10 +0.1 527,462 - cycA MCAODC_02585 0.10 +0.5 527,465 + cycA MCAODC_02585 0.11 +0.5 527,465 + cycA MCAODC_02585 0.11 -0.7 527,465 + cycA MCAODC_02585 0.11 +1.4 527,466 - cycA MCAODC_02585 0.11 -2.1 527,499 + cycA MCAODC_02585 0.13 +0.2 527,500 - cycA MCAODC_02585 0.13 -0.9 527,500 - cycA MCAODC_02585 0.13 +0.1
Or see this region's nucleotide sequence