Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt metN and metI overlap by 8 nucleotides metI and metQ are separated by 39 nucleotides metQ and rcsF are separated by 117 nucleotides
MCAODC_00565: metN - methionine ABC transporter ATP-binding protein MetN, at 91,235 to 92,266
metN
MCAODC_00570: metI - D-methionine transport system permease protein MetI, at 92,259 to 92,912
metI
MCAODC_00575: metQ - methionine ABC transporter substrate-binding lipoprotein MetQ, at 92,952 to 93,767
metQ
MCAODC_00580: rcsF - Rcs stress response system protein RcsF, at 93,885 to 94,289
rcsF
Position (kb) 92
93 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 91.364 kb on - strand, within metN at 91.369 kb on + strand, within metN at 91.370 kb on - strand, within metN at 91.370 kb on - strand, within metN at 91.370 kb on - strand, within metN at 91.375 kb on + strand, within metN at 91.375 kb on + strand, within metN at 91.375 kb on + strand, within metN at 91.375 kb on + strand, within metN at 91.376 kb on - strand, within metN at 91.376 kb on - strand, within metN at 91.376 kb on - strand, within metN at 91.377 kb on + strand, within metN at 91.377 kb on + strand, within metN at 91.377 kb on + strand, within metN at 91.377 kb on + strand, within metN at 91.377 kb on + strand, within metN at 91.377 kb on + strand, within metN at 91.377 kb on + strand, within metN at 91.378 kb on - strand, within metN at 91.378 kb on - strand, within metN at 91.386 kb on + strand, within metN at 91.386 kb on + strand, within metN at 91.386 kb on + strand, within metN at 91.387 kb on - strand, within metN at 91.387 kb on - strand, within metN at 91.387 kb on - strand, within metN at 91.567 kb on + strand, within metN at 91.567 kb on + strand, within metN at 91.630 kb on + strand, within metN at 91.630 kb on + strand, within metN at 91.631 kb on - strand, within metN at 91.631 kb on - strand, within metN at 91.639 kb on + strand, within metN at 91.639 kb on + strand, within metN at 91.640 kb on - strand, within metN at 91.640 kb on - strand, within metN at 91.640 kb on - strand, within metN at 91.640 kb on - strand, within metN at 91.640 kb on - strand, within metN at 91.640 kb on - strand, within metN at 91.643 kb on + strand, within metN at 91.643 kb on + strand, within metN at 91.716 kb on + strand, within metN at 91.716 kb on + strand, within metN at 91.716 kb on + strand, within metN at 91.716 kb on + strand, within metN at 91.717 kb on - strand, within metN at 91.717 kb on - strand, within metN at 91.717 kb on - strand, within metN at 91.717 kb on - strand, within metN at 91.769 kb on - strand, within metN at 91.769 kb on - strand, within metN at 91.852 kb on + strand, within metN at 91.853 kb on - strand, within metN at 91.908 kb on + strand, within metN at 91.908 kb on + strand, within metN at 91.954 kb on + strand, within metN at 92.020 kb on + strand, within metN at 92.122 kb on + strand, within metN at 92.122 kb on + strand, within metN at 92.122 kb on + strand, within metN at 92.122 kb on + strand, within metN at 92.123 kb on - strand, within metN at 92.123 kb on - strand, within metN at 92.123 kb on - strand, within metN at 92.123 kb on - strand, within metN at 92.123 kb on - strand, within metN at 92.126 kb on - strand, within metN at 92.142 kb on - strand, within metN at 92.155 kb on + strand, within metN at 92.155 kb on + strand, within metN at 92.200 kb on + strand at 92.200 kb on + strand at 92.200 kb on + strand at 92.201 kb on - strand at 92.201 kb on - strand at 92.238 kb on + strand at 92.238 kb on + strand at 92.238 kb on + strand at 92.239 kb on - strand at 92.239 kb on - strand at 92.244 kb on + strand at 92.244 kb on + strand at 92.258 kb on + strand at 92.258 kb on + strand at 92.373 kb on + strand, within metI at 92.373 kb on + strand, within metI at 92.373 kb on + strand, within metI at 92.373 kb on + strand, within metI at 92.373 kb on + strand, within metI at 92.373 kb on + strand, within metI at 92.396 kb on + strand, within metI at 92.402 kb on + strand, within metI at 92.415 kb on + strand, within metI at 92.416 kb on - strand, within metI at 92.465 kb on + strand, within metI at 92.465 kb on + strand, within metI at 92.466 kb on - strand, within metI at 92.476 kb on + strand, within metI at 92.477 kb on - strand, within metI at 92.510 kb on + strand, within metI at 92.510 kb on + strand, within metI at 92.567 kb on + strand, within metI at 92.576 kb on + strand, within metI at 92.614 kb on + strand, within metI at 92.675 kb on - strand, within metI at 92.711 kb on + strand, within metI at 92.711 kb on + strand, within metI at 92.712 kb on - strand, within metI at 92.712 kb on - strand, within metI at 92.712 kb on - strand, within metI at 92.712 kb on - strand, within metI at 92.773 kb on + strand, within metI at 92.800 kb on - strand, within metI at 92.840 kb on - strand, within metI at 92.859 kb on + strand at 92.910 kb on + strand at 92.910 kb on + strand at 92.927 kb on + strand at 92.928 kb on - strand at 92.931 kb on + strand at 92.932 kb on - strand at 92.932 kb on - strand at 92.932 kb on - strand at 92.951 kb on + strand at 92.951 kb on + strand at 93.051 kb on - strand, within metQ at 93.120 kb on + strand, within metQ at 93.120 kb on + strand, within metQ at 93.121 kb on - strand, within metQ at 93.156 kb on + strand, within metQ at 93.223 kb on - strand, within metQ at 93.300 kb on + strand, within metQ at 93.300 kb on + strand, within metQ at 93.551 kb on + strand, within metQ at 93.551 kb on + strand, within metQ at 93.551 kb on + strand, within metQ at 93.551 kb on + strand, within metQ at 93.554 kb on + strand, within metQ at 93.564 kb on + strand, within metQ at 93.564 kb on + strand, within metQ at 93.565 kb on - strand, within metQ at 93.565 kb on - strand, within metQ at 93.565 kb on - strand, within metQ at 93.565 kb on - strand, within metQ at 93.617 kb on + strand, within metQ at 93.617 kb on + strand, within metQ at 93.618 kb on - strand, within metQ at 93.630 kb on + strand, within metQ at 93.631 kb on - strand, within metQ at 93.631 kb on - strand, within metQ at 93.635 kb on - strand, within metQ at 93.773 kb on - strand at 93.792 kb on + strand at 93.796 kb on - strand at 93.868 kb on + strand at 93.868 kb on + strand at 93.869 kb on - strand at 93.869 kb on - strand at 93.869 kb on - strand at 93.869 kb on - strand at 93.881 kb on + strand at 93.882 kb on - strand at 93.882 kb on - strand at 93.884 kb on + strand at 93.884 kb on + strand at 93.884 kb on + strand at 93.884 kb on + strand at 93.885 kb on - strand at 93.896 kb on - strand at 93.911 kb on - strand at 93.911 kb on - strand at 93.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 91,364 - metN MCAODC_00565 0.12 +0.6 91,369 + metN MCAODC_00565 0.13 -1.5 91,370 - metN MCAODC_00565 0.13 +0.1 91,370 - metN MCAODC_00565 0.13 -0.4 91,370 - metN MCAODC_00565 0.13 +1.2 91,375 + metN MCAODC_00565 0.14 +0.2 91,375 + metN MCAODC_00565 0.14 +0.3 91,375 + metN MCAODC_00565 0.14 +0.2 91,375 + metN MCAODC_00565 0.14 -0.5 91,376 - metN MCAODC_00565 0.14 -0.8 91,376 - metN MCAODC_00565 0.14 -1.3 91,376 - metN MCAODC_00565 0.14 +0.3 91,377 + metN MCAODC_00565 0.14 +0.4 91,377 + metN MCAODC_00565 0.14 -0.3 91,377 + metN MCAODC_00565 0.14 -0.1 91,377 + metN MCAODC_00565 0.14 +0.5 91,377 + metN MCAODC_00565 0.14 -0.1 91,377 + metN MCAODC_00565 0.14 +1.2 91,377 + metN MCAODC_00565 0.14 +0.0 91,378 - metN MCAODC_00565 0.14 +0.3 91,378 - metN MCAODC_00565 0.14 -0.6 91,386 + metN MCAODC_00565 0.15 +0.1 91,386 + metN MCAODC_00565 0.15 -0.1 91,386 + metN MCAODC_00565 0.15 +0.4 91,387 - metN MCAODC_00565 0.15 +0.2 91,387 - metN MCAODC_00565 0.15 +2.3 91,387 - metN MCAODC_00565 0.15 -0.8 91,567 + metN MCAODC_00565 0.32 -1.1 91,567 + metN MCAODC_00565 0.32 +0.0 91,630 + metN MCAODC_00565 0.38 +0.9 91,630 + metN MCAODC_00565 0.38 +0.5 91,631 - metN MCAODC_00565 0.38 +0.2 91,631 - metN MCAODC_00565 0.38 +0.4 91,639 + metN MCAODC_00565 0.39 -1.5 91,639 + metN MCAODC_00565 0.39 -1.2 91,640 - metN MCAODC_00565 0.39 +1.7 91,640 - metN MCAODC_00565 0.39 +0.4 91,640 - metN MCAODC_00565 0.39 -0.3 91,640 - metN MCAODC_00565 0.39 -0.1 91,640 - metN MCAODC_00565 0.39 +0.3 91,640 - metN MCAODC_00565 0.39 +1.7 91,643 + metN MCAODC_00565 0.40 -0.8 91,643 + metN MCAODC_00565 0.40 -0.6 91,716 + metN MCAODC_00565 0.47 -0.8 91,716 + metN MCAODC_00565 0.47 -0.8 91,716 + metN MCAODC_00565 0.47 -0.1 91,716 + metN MCAODC_00565 0.47 +0.0 91,717 - metN MCAODC_00565 0.47 -2.5 91,717 - metN MCAODC_00565 0.47 -3.5 91,717 - metN MCAODC_00565 0.47 -1.1 91,717 - metN MCAODC_00565 0.47 -0.4 91,769 - metN MCAODC_00565 0.52 -2.0 91,769 - metN MCAODC_00565 0.52 +0.5 91,852 + metN MCAODC_00565 0.60 -0.1 91,853 - metN MCAODC_00565 0.60 +0.6 91,908 + metN MCAODC_00565 0.65 +0.4 91,908 + metN MCAODC_00565 0.65 +1.6 91,954 + metN MCAODC_00565 0.70 +0.6 92,020 + metN MCAODC_00565 0.76 -0.4 92,122 + metN MCAODC_00565 0.86 +0.5 92,122 + metN MCAODC_00565 0.86 +0.2 92,122 + metN MCAODC_00565 0.86 -2.5 92,122 + metN MCAODC_00565 0.86 -0.6 92,123 - metN MCAODC_00565 0.86 -0.1 92,123 - metN MCAODC_00565 0.86 -0.3 92,123 - metN MCAODC_00565 0.86 +1.5 92,123 - metN MCAODC_00565 0.86 +1.1 92,123 - metN MCAODC_00565 0.86 -0.2 92,126 - metN MCAODC_00565 0.86 -0.1 92,142 - metN MCAODC_00565 0.88 +1.1 92,155 + metN MCAODC_00565 0.89 -0.6 92,155 + metN MCAODC_00565 0.89 -2.3 92,200 + +0.3 92,200 + +0.9 92,200 + +0.4 92,201 - +0.6 92,201 - -0.1 92,238 + +0.1 92,238 + -0.5 92,238 + +0.4 92,239 - +0.0 92,239 - -1.2 92,244 + +1.1 92,244 + -0.4 92,258 + +1.5 92,258 + +0.9 92,373 + metI MCAODC_00570 0.17 +1.6 92,373 + metI MCAODC_00570 0.17 +0.3 92,373 + metI MCAODC_00570 0.17 +0.1 92,373 + metI MCAODC_00570 0.17 +0.3 92,373 + metI MCAODC_00570 0.17 +0.0 92,373 + metI MCAODC_00570 0.17 -0.2 92,396 + metI MCAODC_00570 0.21 +0.4 92,402 + metI MCAODC_00570 0.22 +0.8 92,415 + metI MCAODC_00570 0.24 +0.0 92,416 - metI MCAODC_00570 0.24 +0.7 92,465 + metI MCAODC_00570 0.31 +0.5 92,465 + metI MCAODC_00570 0.31 +0.7 92,466 - metI MCAODC_00570 0.32 +0.8 92,476 + metI MCAODC_00570 0.33 -1.4 92,477 - metI MCAODC_00570 0.33 +0.9 92,510 + metI MCAODC_00570 0.38 +0.7 92,510 + metI MCAODC_00570 0.38 -0.3 92,567 + metI MCAODC_00570 0.47 +0.9 92,576 + metI MCAODC_00570 0.48 -0.9 92,614 + metI MCAODC_00570 0.54 -0.5 92,675 - metI MCAODC_00570 0.64 +0.8 92,711 + metI MCAODC_00570 0.69 +1.0 92,711 + metI MCAODC_00570 0.69 +0.0 92,712 - metI MCAODC_00570 0.69 +0.4 92,712 - metI MCAODC_00570 0.69 -0.4 92,712 - metI MCAODC_00570 0.69 -1.0 92,712 - metI MCAODC_00570 0.69 +0.5 92,773 + metI MCAODC_00570 0.79 +0.5 92,800 - metI MCAODC_00570 0.83 +0.4 92,840 - metI MCAODC_00570 0.89 -0.1 92,859 + -1.5 92,910 + +0.3 92,910 + -0.5 92,927 + +0.4 92,928 - +0.5 92,931 + -0.6 92,932 - -0.1 92,932 - +0.9 92,932 - +0.4 92,951 + -0.2 92,951 + +0.8 93,051 - metQ MCAODC_00575 0.12 +1.0 93,120 + metQ MCAODC_00575 0.21 -3.4 93,120 + metQ MCAODC_00575 0.21 +1.2 93,121 - metQ MCAODC_00575 0.21 +0.1 93,156 + metQ MCAODC_00575 0.25 -0.7 93,223 - metQ MCAODC_00575 0.33 +1.7 93,300 + metQ MCAODC_00575 0.43 -0.1 93,300 + metQ MCAODC_00575 0.43 +0.7 93,551 + metQ MCAODC_00575 0.73 +0.1 93,551 + metQ MCAODC_00575 0.73 -0.1 93,551 + metQ MCAODC_00575 0.73 -0.9 93,551 + metQ MCAODC_00575 0.73 +0.5 93,554 + metQ MCAODC_00575 0.74 +0.5 93,564 + metQ MCAODC_00575 0.75 -0.8 93,564 + metQ MCAODC_00575 0.75 +0.0 93,565 - metQ MCAODC_00575 0.75 -1.4 93,565 - metQ MCAODC_00575 0.75 +0.2 93,565 - metQ MCAODC_00575 0.75 -1.1 93,565 - metQ MCAODC_00575 0.75 +0.9 93,617 + metQ MCAODC_00575 0.81 +0.1 93,617 + metQ MCAODC_00575 0.81 -0.2 93,618 - metQ MCAODC_00575 0.82 +0.2 93,630 + metQ MCAODC_00575 0.83 +0.4 93,631 - metQ MCAODC_00575 0.83 -1.6 93,631 - metQ MCAODC_00575 0.83 -0.2 93,635 - metQ MCAODC_00575 0.84 +1.0 93,773 - -0.1 93,792 + +0.2 93,796 - -1.4 93,868 + -0.6 93,868 + +0.4 93,869 - +0.8 93,869 - -0.2 93,869 - +0.5 93,869 - +0.9 93,881 + -0.5 93,882 - -0.2 93,882 - -0.1 93,884 + +0.2 93,884 + -0.5 93,884 + +0.0 93,884 + -0.9 93,885 - +0.6 93,896 - +0.1 93,911 - -1.8 93,911 - +2.2 93,911 - +1.0
Or see this region's nucleotide sequence