Strain Fitness in Escherichia coli ECRC101 around MCAODC_26545

Experiment: WM_TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybeQ and ybeL are separated by 69 nucleotidesybeL and leuS are separated by 235 nucleotidesleuS and lptE are separated by 14 nucleotideslptE and holA overlap by 1 nucleotides MCAODC_26535: ybeQ - Sel1-repeat-containing protein YbeQ, at 2,023,277 to 2,023,864 ybeQ MCAODC_26540: ybeL - zinc ribbon-containing protein, at 2,023,934 to 2,024,416 ybeL MCAODC_26545: leuS - leucine--tRNA ligase, at 2,024,652 to 2,027,234 leuS MCAODC_26550: lptE - LPS assembly lipoprotein LptE, at 2,027,249 to 2,027,830 lptE MCAODC_26555: holA - DNA polymerase III subunit delta, at 2,027,830 to 2,028,861 holA Position (kb) 2024 2025 2026 2027 2028Strain fitness (log2 ratio) -2 -1 0 1 2at 2023.688 kb on - strand, within ybeQat 2023.724 kb on + strand, within ybeQat 2023.724 kb on + strand, within ybeQat 2023.726 kb on + strand, within ybeQat 2023.727 kb on - strand, within ybeQat 2023.738 kb on + strand, within ybeQat 2023.738 kb on + strand, within ybeQat 2023.738 kb on + strand, within ybeQat 2023.738 kb on + strand, within ybeQat 2023.739 kb on - strand, within ybeQat 2023.742 kb on + strand, within ybeQat 2023.742 kb on + strand, within ybeQat 2023.742 kb on + strand, within ybeQat 2023.742 kb on + strand, within ybeQat 2023.743 kb on - strand, within ybeQat 2023.743 kb on - strand, within ybeQat 2023.793 kb on + strand, within ybeQat 2023.857 kb on + strandat 2024.008 kb on - strand, within ybeLat 2024.076 kb on + strand, within ybeLat 2024.077 kb on - strand, within ybeLat 2024.220 kb on + strand, within ybeLat 2024.221 kb on - strand, within ybeLat 2024.221 kb on - strand, within ybeLat 2024.221 kb on - strand, within ybeLat 2024.221 kb on - strand, within ybeLat 2024.398 kb on - strandat 2024.398 kb on - strandat 2024.398 kb on - strandat 2024.445 kb on + strandat 2024.445 kb on + strandat 2024.446 kb on - strandat 2024.447 kb on + strandat 2024.448 kb on - strandat 2024.448 kb on - strandat 2024.450 kb on + strandat 2024.451 kb on - strandat 2024.451 kb on - strandat 2024.451 kb on - strandat 2024.453 kb on + strandat 2024.479 kb on + strandat 2024.479 kb on + strandat 2024.480 kb on - strandat 2024.504 kb on + strandat 2024.504 kb on + strandat 2024.504 kb on + strandat 2024.504 kb on + strandat 2024.504 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP9
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2,023,688 - ybeQ MCAODC_26535 0.70 -2.6
2,023,724 + ybeQ MCAODC_26535 0.76 +0.3
2,023,724 + ybeQ MCAODC_26535 0.76 +1.0
2,023,726 + ybeQ MCAODC_26535 0.76 -1.4
2,023,727 - ybeQ MCAODC_26535 0.77 +0.2
2,023,738 + ybeQ MCAODC_26535 0.78 +0.5
2,023,738 + ybeQ MCAODC_26535 0.78 +0.9
2,023,738 + ybeQ MCAODC_26535 0.78 +1.0
2,023,738 + ybeQ MCAODC_26535 0.78 +1.1
2,023,739 - ybeQ MCAODC_26535 0.79 -1.0
2,023,742 + ybeQ MCAODC_26535 0.79 +1.2
2,023,742 + ybeQ MCAODC_26535 0.79 +0.4
2,023,742 + ybeQ MCAODC_26535 0.79 +1.8
2,023,742 + ybeQ MCAODC_26535 0.79 -0.5
2,023,743 - ybeQ MCAODC_26535 0.79 +0.5
2,023,743 - ybeQ MCAODC_26535 0.79 -0.3
2,023,793 + ybeQ MCAODC_26535 0.88 -2.4
2,023,857 + +2.1
2,024,008 - ybeL MCAODC_26540 0.15 -1.7
2,024,076 + ybeL MCAODC_26540 0.29 +1.7
2,024,077 - ybeL MCAODC_26540 0.30 +1.4
2,024,220 + ybeL MCAODC_26540 0.59 -0.1
2,024,221 - ybeL MCAODC_26540 0.59 +1.7
2,024,221 - ybeL MCAODC_26540 0.59 -0.3
2,024,221 - ybeL MCAODC_26540 0.59 +0.7
2,024,221 - ybeL MCAODC_26540 0.59 +0.1
2,024,398 - +1.0
2,024,398 - +1.5
2,024,398 - -0.1
2,024,445 + +0.7
2,024,445 + +0.8
2,024,446 - +0.8
2,024,447 + +1.1
2,024,448 - -0.7
2,024,448 - -0.1
2,024,450 + -0.8
2,024,451 - +0.8
2,024,451 - -1.3
2,024,451 - +0.3
2,024,453 + -0.5
2,024,479 + +2.1
2,024,479 + +1.6
2,024,480 - -0.6
2,024,504 + -0.3
2,024,504 + +0.8
2,024,504 + +2.1
2,024,504 + -0.8
2,024,504 + -0.7

Or see this region's nucleotide sequence