Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gfcD and gfcE are separated by 45 nucleotides gfcE and etp overlap by 13 nucleotides etp and etk are separated by 19 nucleotides
MCAODC_24135: gfcD - Uncharacterized lipoprotein GfcD, at 1,553,271 to 1,555,367
gfcD
MCAODC_24140: gfcE - Putative polysaccharide export protein GfcE, at 1,555,413 to 1,556,552
gfcE
MCAODC_24145: etp - protein-tyrosine-phosphatase Etp, at 1,556,540 to 1,556,986
etp
MCAODC_24150: etk - tyrosine-protein kinase, at 1,557,006 to 1,559,186
etk
Position (kb) 1555
1556
1557 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1554.528 kb on - strand, within gfcD at 1554.528 kb on - strand, within gfcD at 1554.545 kb on + strand, within gfcD at 1554.549 kb on + strand, within gfcD at 1554.549 kb on + strand, within gfcD at 1554.600 kb on + strand, within gfcD at 1554.601 kb on - strand, within gfcD at 1554.601 kb on - strand, within gfcD at 1554.683 kb on + strand, within gfcD at 1554.687 kb on + strand, within gfcD at 1554.696 kb on + strand, within gfcD at 1554.696 kb on + strand, within gfcD at 1554.696 kb on + strand, within gfcD at 1554.768 kb on + strand, within gfcD at 1554.823 kb on + strand, within gfcD at 1554.824 kb on - strand, within gfcD at 1554.837 kb on + strand, within gfcD at 1554.849 kb on + strand, within gfcD at 1554.873 kb on + strand, within gfcD at 1554.873 kb on + strand, within gfcD at 1554.900 kb on + strand, within gfcD at 1554.945 kb on + strand, within gfcD at 1554.946 kb on - strand, within gfcD at 1555.074 kb on + strand, within gfcD at 1555.169 kb on + strand at 1555.170 kb on - strand at 1555.170 kb on - strand at 1555.196 kb on + strand at 1555.199 kb on + strand at 1555.211 kb on + strand at 1555.247 kb on + strand at 1555.375 kb on + strand at 1555.388 kb on + strand at 1555.475 kb on + strand at 1555.476 kb on - strand at 1555.528 kb on + strand, within gfcE at 1555.528 kb on + strand, within gfcE at 1555.565 kb on + strand, within gfcE at 1555.565 kb on + strand, within gfcE at 1555.565 kb on + strand, within gfcE at 1555.565 kb on + strand, within gfcE at 1555.565 kb on + strand, within gfcE at 1555.569 kb on + strand, within gfcE at 1555.616 kb on + strand, within gfcE at 1555.616 kb on + strand, within gfcE at 1555.659 kb on + strand, within gfcE at 1555.659 kb on + strand, within gfcE at 1555.660 kb on - strand, within gfcE at 1555.665 kb on + strand, within gfcE at 1555.720 kb on + strand, within gfcE at 1555.740 kb on + strand, within gfcE at 1555.800 kb on + strand, within gfcE at 1555.800 kb on + strand, within gfcE at 1555.803 kb on - strand, within gfcE at 1555.803 kb on - strand, within gfcE at 1555.803 kb on - strand, within gfcE at 1555.835 kb on + strand, within gfcE at 1555.836 kb on - strand, within gfcE at 1555.932 kb on + strand, within gfcE at 1555.933 kb on - strand, within gfcE at 1556.071 kb on + strand, within gfcE at 1556.091 kb on + strand, within gfcE at 1556.152 kb on + strand, within gfcE at 1556.156 kb on + strand, within gfcE at 1556.237 kb on + strand, within gfcE at 1556.273 kb on + strand, within gfcE at 1556.354 kb on + strand, within gfcE at 1556.354 kb on + strand, within gfcE at 1556.358 kb on + strand, within gfcE at 1556.358 kb on + strand, within gfcE at 1556.433 kb on + strand, within gfcE at 1556.434 kb on - strand, within gfcE at 1556.434 kb on - strand, within gfcE at 1556.434 kb on - strand, within gfcE at 1556.673 kb on + strand, within etp at 1556.673 kb on + strand, within etp at 1556.749 kb on + strand, within etp at 1556.749 kb on + strand, within etp at 1556.777 kb on + strand, within etp at 1556.809 kb on + strand, within etp at 1556.809 kb on + strand, within etp at 1556.810 kb on - strand, within etp at 1556.821 kb on + strand, within etp at 1556.933 kb on + strand, within etp at 1556.997 kb on + strand at 1557.002 kb on + strand at 1557.107 kb on + strand at 1557.107 kb on + strand at 1557.147 kb on + strand at 1557.148 kb on - strand at 1557.148 kb on - strand at 1557.157 kb on + strand at 1557.182 kb on + strand at 1557.182 kb on + strand at 1557.182 kb on + strand at 1557.239 kb on + strand, within etk at 1557.239 kb on + strand, within etk at 1557.239 kb on + strand, within etk at 1557.240 kb on - strand, within etk at 1557.248 kb on + strand, within etk at 1557.354 kb on + strand, within etk at 1557.494 kb on + strand, within etk at 1557.494 kb on + strand, within etk at 1557.495 kb on - strand, within etk
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 1,554,528 - gfcD MCAODC_24135 0.60 +1.5 1,554,528 - gfcD MCAODC_24135 0.60 -1.1 1,554,545 + gfcD MCAODC_24135 0.61 +0.0 1,554,549 + gfcD MCAODC_24135 0.61 -2.0 1,554,549 + gfcD MCAODC_24135 0.61 +0.6 1,554,600 + gfcD MCAODC_24135 0.63 +1.0 1,554,601 - gfcD MCAODC_24135 0.63 +0.6 1,554,601 - gfcD MCAODC_24135 0.63 +0.8 1,554,683 + gfcD MCAODC_24135 0.67 +1.5 1,554,687 + gfcD MCAODC_24135 0.68 -0.3 1,554,696 + gfcD MCAODC_24135 0.68 +0.3 1,554,696 + gfcD MCAODC_24135 0.68 +0.9 1,554,696 + gfcD MCAODC_24135 0.68 -0.1 1,554,768 + gfcD MCAODC_24135 0.71 -0.5 1,554,823 + gfcD MCAODC_24135 0.74 -0.1 1,554,824 - gfcD MCAODC_24135 0.74 -0.1 1,554,837 + gfcD MCAODC_24135 0.75 -0.1 1,554,849 + gfcD MCAODC_24135 0.75 -1.1 1,554,873 + gfcD MCAODC_24135 0.76 +0.5 1,554,873 + gfcD MCAODC_24135 0.76 +0.1 1,554,900 + gfcD MCAODC_24135 0.78 +0.1 1,554,945 + gfcD MCAODC_24135 0.80 +0.5 1,554,946 - gfcD MCAODC_24135 0.80 +1.1 1,555,074 + gfcD MCAODC_24135 0.86 +0.1 1,555,169 + +1.5 1,555,170 - -0.0 1,555,170 - +1.9 1,555,196 + +0.6 1,555,199 + +0.4 1,555,211 + -0.1 1,555,247 + +0.1 1,555,375 + +0.6 1,555,388 + +0.2 1,555,475 + -0.3 1,555,476 - -0.2 1,555,528 + gfcE MCAODC_24140 0.10 -0.2 1,555,528 + gfcE MCAODC_24140 0.10 +1.4 1,555,565 + gfcE MCAODC_24140 0.13 -0.1 1,555,565 + gfcE MCAODC_24140 0.13 +1.3 1,555,565 + gfcE MCAODC_24140 0.13 -2.5 1,555,565 + gfcE MCAODC_24140 0.13 -2.2 1,555,565 + gfcE MCAODC_24140 0.13 -0.1 1,555,569 + gfcE MCAODC_24140 0.14 -0.1 1,555,616 + gfcE MCAODC_24140 0.18 -0.5 1,555,616 + gfcE MCAODC_24140 0.18 -1.1 1,555,659 + gfcE MCAODC_24140 0.22 -3.2 1,555,659 + gfcE MCAODC_24140 0.22 -0.1 1,555,660 - gfcE MCAODC_24140 0.22 -1.4 1,555,665 + gfcE MCAODC_24140 0.22 -1.1 1,555,720 + gfcE MCAODC_24140 0.27 +3.1 1,555,740 + gfcE MCAODC_24140 0.29 -0.0 1,555,800 + gfcE MCAODC_24140 0.34 +0.1 1,555,800 + gfcE MCAODC_24140 0.34 +1.0 1,555,803 - gfcE MCAODC_24140 0.34 -0.1 1,555,803 - gfcE MCAODC_24140 0.34 -0.2 1,555,803 - gfcE MCAODC_24140 0.34 +1.9 1,555,835 + gfcE MCAODC_24140 0.37 -0.0 1,555,836 - gfcE MCAODC_24140 0.37 +0.8 1,555,932 + gfcE MCAODC_24140 0.46 +0.5 1,555,933 - gfcE MCAODC_24140 0.46 -1.0 1,556,071 + gfcE MCAODC_24140 0.58 -0.4 1,556,091 + gfcE MCAODC_24140 0.59 +0.7 1,556,152 + gfcE MCAODC_24140 0.65 -0.2 1,556,156 + gfcE MCAODC_24140 0.65 -1.1 1,556,237 + gfcE MCAODC_24140 0.72 +1.0 1,556,273 + gfcE MCAODC_24140 0.75 -0.9 1,556,354 + gfcE MCAODC_24140 0.83 +0.6 1,556,354 + gfcE MCAODC_24140 0.83 +1.2 1,556,358 + gfcE MCAODC_24140 0.83 +1.6 1,556,358 + gfcE MCAODC_24140 0.83 +0.8 1,556,433 + gfcE MCAODC_24140 0.89 -0.1 1,556,434 - gfcE MCAODC_24140 0.90 -1.6 1,556,434 - gfcE MCAODC_24140 0.90 -1.7 1,556,434 - gfcE MCAODC_24140 0.90 -1.3 1,556,673 + etp MCAODC_24145 0.30 +1.6 1,556,673 + etp MCAODC_24145 0.30 +0.7 1,556,749 + etp MCAODC_24145 0.47 +0.6 1,556,749 + etp MCAODC_24145 0.47 -0.2 1,556,777 + etp MCAODC_24145 0.53 +2.1 1,556,809 + etp MCAODC_24145 0.60 -0.3 1,556,809 + etp MCAODC_24145 0.60 +0.1 1,556,810 - etp MCAODC_24145 0.60 +0.8 1,556,821 + etp MCAODC_24145 0.63 +0.2 1,556,933 + etp MCAODC_24145 0.88 +0.6 1,556,997 + -1.0 1,557,002 + +0.0 1,557,107 + +1.3 1,557,107 + -0.7 1,557,147 + +0.3 1,557,148 - +1.0 1,557,148 - +1.7 1,557,157 + +1.8 1,557,182 + -2.4 1,557,182 + -0.9 1,557,182 + +1.0 1,557,239 + etk MCAODC_24150 0.11 +0.1 1,557,239 + etk MCAODC_24150 0.11 -0.2 1,557,239 + etk MCAODC_24150 0.11 +2.0 1,557,240 - etk MCAODC_24150 0.11 -0.3 1,557,248 + etk MCAODC_24150 0.11 +0.3 1,557,354 + etk MCAODC_24150 0.16 -0.0 1,557,494 + etk MCAODC_24150 0.22 +0.2 1,557,494 + etk MCAODC_24150 0.22 +0.8 1,557,495 - etk MCAODC_24150 0.22 -1.0
Or see this region's nucleotide sequence