Strain Fitness in Escherichia coli ECRC101 around MCAODC_21305

Experiment: WM_TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgp18 and MCAODC_21300 overlap by 1 nucleotidesMCAODC_21300 and MCAODC_21305 overlap by 4 nucleotidesMCAODC_21305 and MCAODC_21310 are separated by 43 nucleotidesMCAODC_21310 and MCAODC_21315 are separated by 26 nucleotidesMCAODC_21315 and yjdB are separated by 13 nucleotides MCAODC_21295: gp18 - phage minor tail protein L, at 1,062,063 to 1,062,761 gp18 MCAODC_21300: MCAODC_21300 - phage tail protein, at 1,062,761 to 1,063,090 _21300 MCAODC_21305: MCAODC_21305 - phage tail tape measure protein, at 1,063,087 to 1,065,732 _21305 MCAODC_21310: MCAODC_21310 - phage tail assembly protein T, at 1,065,776 to 1,066,084 _21310 MCAODC_21315: MCAODC_21315 - phage minor tail protein G, at 1,066,111 to 1,066,533 _21315 MCAODC_21320: yjdB - phage tail protein, at 1,066,547 to 1,067,299 yjdB Position (kb) 1063 1064 1065 1066Strain fitness (log2 ratio) -1 0 1at 1063.170 kb on - strandat 1063.170 kb on - strandat 1063.170 kb on - strandat 1064.464 kb on - strand, within MCAODC_21305

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP9
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1,063,170 - -0.2
1,063,170 - +1.1
1,063,170 - -1.3
1,064,464 - MCAODC_21305 0.52 +1.0

Or see this region's nucleotide sequence