Strain Fitness in Escherichia coli ECRC101 around MCAODC_18815

Experiment: WM_TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrnd and fadD are separated by 81 nucleotidesfadD and yeaY are separated by 138 nucleotidesyeaY and tsaB are separated by 39 nucleotides MCAODC_18805: rnd - ribonuclease D, at 617,961 to 619,076 rnd MCAODC_18815: fadD - long-chain-fatty-acid--CoA ligase FadD, at 619,158 to 620,909 fadD MCAODC_18820: yeaY - Slp family lipoprotein YeaY, at 621,048 to 621,629 yeaY MCAODC_18825: tsaB - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 621,669 to 622,364 tsaB Position (kb) 619 620 621Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 618.338 kb on + strand, within rndat 618.339 kb on - strand, within rndat 618.339 kb on - strand, within rndat 618.339 kb on - strand, within rndat 618.341 kb on - strand, within rndat 618.463 kb on - strand, within rndat 618.591 kb on - strand, within rndat 618.591 kb on - strand, within rndat 618.616 kb on + strand, within rndat 618.979 kb on + strandat 619.274 kb on - strandat 619.405 kb on - strand, within fadDat 619.732 kb on + strand, within fadDat 619.789 kb on + strand, within fadDat 619.895 kb on + strand, within fadDat 619.896 kb on - strand, within fadDat 619.896 kb on - strand, within fadDat 620.042 kb on + strand, within fadDat 620.043 kb on - strand, within fadDat 620.120 kb on - strand, within fadDat 620.154 kb on - strand, within fadDat 620.207 kb on - strand, within fadDat 620.221 kb on - strand, within fadDat 620.251 kb on + strand, within fadDat 620.282 kb on + strand, within fadDat 620.336 kb on - strand, within fadDat 620.522 kb on - strand, within fadDat 620.597 kb on + strand, within fadDat 620.597 kb on + strand, within fadDat 620.763 kb on - strandat 620.763 kb on - strandat 620.894 kb on + strandat 620.971 kb on + strandat 620.971 kb on + strandat 621.137 kb on - strand, within yeaYat 621.222 kb on - strand, within yeaYat 621.228 kb on - strand, within yeaYat 621.230 kb on - strand, within yeaYat 621.338 kb on - strand, within yeaYat 621.338 kb on - strand, within yeaYat 621.479 kb on - strand, within yeaYat 621.479 kb on - strand, within yeaYat 621.598 kb on - strandat 621.658 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP9
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618,338 + rnd MCAODC_18805 0.34 +0.3
618,339 - rnd MCAODC_18805 0.34 +0.6
618,339 - rnd MCAODC_18805 0.34 +1.2
618,339 - rnd MCAODC_18805 0.34 +0.0
618,341 - rnd MCAODC_18805 0.34 -1.3
618,463 - rnd MCAODC_18805 0.45 +1.5
618,591 - rnd MCAODC_18805 0.56 -0.6
618,591 - rnd MCAODC_18805 0.56 +0.4
618,616 + rnd MCAODC_18805 0.59 +1.4
618,979 + -1.4
619,274 - +1.3
619,405 - fadD MCAODC_18815 0.14 -0.3
619,732 + fadD MCAODC_18815 0.33 +0.6
619,789 + fadD MCAODC_18815 0.36 +0.1
619,895 + fadD MCAODC_18815 0.42 +1.5
619,896 - fadD MCAODC_18815 0.42 +0.1
619,896 - fadD MCAODC_18815 0.42 +0.7
620,042 + fadD MCAODC_18815 0.50 +2.3
620,043 - fadD MCAODC_18815 0.51 +0.5
620,120 - fadD MCAODC_18815 0.55 +1.3
620,154 - fadD MCAODC_18815 0.57 +1.0
620,207 - fadD MCAODC_18815 0.60 +1.9
620,221 - fadD MCAODC_18815 0.61 -1.8
620,251 + fadD MCAODC_18815 0.62 -0.5
620,282 + fadD MCAODC_18815 0.64 +0.7
620,336 - fadD MCAODC_18815 0.67 +1.2
620,522 - fadD MCAODC_18815 0.78 +0.7
620,597 + fadD MCAODC_18815 0.82 +0.5
620,597 + fadD MCAODC_18815 0.82 -3.5
620,763 - +0.0
620,763 - -0.4
620,894 + +0.2
620,971 + -0.1
620,971 + +1.9
621,137 - yeaY MCAODC_18820 0.15 +1.6
621,222 - yeaY MCAODC_18820 0.30 +0.7
621,228 - yeaY MCAODC_18820 0.31 -0.7
621,230 - yeaY MCAODC_18820 0.31 -2.3
621,338 - yeaY MCAODC_18820 0.50 +0.4
621,338 - yeaY MCAODC_18820 0.50 +1.4
621,479 - yeaY MCAODC_18820 0.74 -0.0
621,479 - yeaY MCAODC_18820 0.74 -0.5
621,598 - -2.6
621,658 - +0.0

Or see this region's nucleotide sequence