Strain Fitness in Escherichia coli ECRC101 around MCAODC_18530

Experiment: WM_TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydjY and ydjZ are separated by 14 nucleotidesydjZ and ynjA overlap by 1 nucleotidesynjA and ynjB are separated by 9 nucleotides MCAODC_18520: ydjY - Uncharacterized protein YdjY, at 562,896 to 563,573 ydjY MCAODC_18525: ydjZ - TVP38/TMEM64 family inner membrane protein YdjZ, at 563,588 to 564,295 ydjZ MCAODC_18530: ynjA - Uncharacterized protein YnjA, at 564,295 to 564,843 ynjA MCAODC_18535: ynjB - ABC transporter substrate-binding protein, at 564,853 to 566,019 ynjB Position (kb) 564 565Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 563.463 kb on + strand, within ydjYat 563.463 kb on + strand, within ydjYat 563.463 kb on + strand, within ydjYat 563.463 kb on + strand, within ydjYat 563.464 kb on - strand, within ydjYat 563.469 kb on + strand, within ydjYat 563.469 kb on + strand, within ydjYat 563.469 kb on + strand, within ydjYat 563.469 kb on + strand, within ydjYat 563.469 kb on + strand, within ydjYat 563.626 kb on + strandat 563.626 kb on + strandat 563.627 kb on - strandat 563.742 kb on + strand, within ydjZat 563.742 kb on + strand, within ydjZat 563.742 kb on + strand, within ydjZat 563.743 kb on - strand, within ydjZat 563.743 kb on - strand, within ydjZat 563.743 kb on - strand, within ydjZat 563.995 kb on + strand, within ydjZat 564.080 kb on + strand, within ydjZat 564.081 kb on - strand, within ydjZat 564.155 kb on - strand, within ydjZat 564.161 kb on + strand, within ydjZat 564.162 kb on - strand, within ydjZat 564.364 kb on + strand, within ynjAat 564.377 kb on + strand, within ynjAat 564.377 kb on + strand, within ynjAat 564.479 kb on + strand, within ynjAat 564.822 kb on + strandat 564.841 kb on + strandat 564.997 kb on + strand, within ynjBat 565.039 kb on - strand, within ynjBat 565.040 kb on + strand, within ynjBat 565.041 kb on - strand, within ynjBat 565.172 kb on + strand, within ynjBat 565.228 kb on + strand, within ynjBat 565.401 kb on + strand, within ynjBat 565.484 kb on + strand, within ynjBat 565.485 kb on - strand, within ynjBat 565.540 kb on + strand, within ynjBat 565.561 kb on + strand, within ynjBat 565.561 kb on + strand, within ynjBat 565.561 kb on + strand, within ynjBat 565.562 kb on - strand, within ynjBat 565.654 kb on - strand, within ynjBat 565.709 kb on - strand, within ynjB

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP9
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563,463 + ydjY MCAODC_18520 0.84 +1.7
563,463 + ydjY MCAODC_18520 0.84 -0.6
563,463 + ydjY MCAODC_18520 0.84 +0.3
563,463 + ydjY MCAODC_18520 0.84 +0.1
563,464 - ydjY MCAODC_18520 0.84 -0.1
563,469 + ydjY MCAODC_18520 0.85 +0.1
563,469 + ydjY MCAODC_18520 0.85 +1.2
563,469 + ydjY MCAODC_18520 0.85 -1.3
563,469 + ydjY MCAODC_18520 0.85 +1.9
563,469 + ydjY MCAODC_18520 0.85 -1.5
563,626 + -1.5
563,626 + -2.2
563,627 - -0.1
563,742 + ydjZ MCAODC_18525 0.22 +0.3
563,742 + ydjZ MCAODC_18525 0.22 +0.4
563,742 + ydjZ MCAODC_18525 0.22 +2.1
563,743 - ydjZ MCAODC_18525 0.22 -1.3
563,743 - ydjZ MCAODC_18525 0.22 +1.7
563,743 - ydjZ MCAODC_18525 0.22 -2.1
563,995 + ydjZ MCAODC_18525 0.57 -1.1
564,080 + ydjZ MCAODC_18525 0.69 -3.5
564,081 - ydjZ MCAODC_18525 0.70 +0.4
564,155 - ydjZ MCAODC_18525 0.80 -0.3
564,161 + ydjZ MCAODC_18525 0.81 +2.3
564,162 - ydjZ MCAODC_18525 0.81 -0.4
564,364 + ynjA MCAODC_18530 0.13 -2.0
564,377 + ynjA MCAODC_18530 0.15 +0.7
564,377 + ynjA MCAODC_18530 0.15 -2.5
564,479 + ynjA MCAODC_18530 0.34 +0.2
564,822 + -0.5
564,841 + -0.5
564,997 + ynjB MCAODC_18535 0.12 -1.2
565,039 - ynjB MCAODC_18535 0.16 -0.1
565,040 + ynjB MCAODC_18535 0.16 -0.1
565,041 - ynjB MCAODC_18535 0.16 -0.6
565,172 + ynjB MCAODC_18535 0.27 -1.2
565,228 + ynjB MCAODC_18535 0.32 -0.2
565,401 + ynjB MCAODC_18535 0.47 +0.2
565,484 + ynjB MCAODC_18535 0.54 +0.5
565,485 - ynjB MCAODC_18535 0.54 +1.0
565,540 + ynjB MCAODC_18535 0.59 +0.2
565,561 + ynjB MCAODC_18535 0.61 +1.0
565,561 + ynjB MCAODC_18535 0.61 -2.7
565,561 + ynjB MCAODC_18535 0.61 -0.4
565,562 - ynjB MCAODC_18535 0.61 +2.0
565,654 - ynjB MCAODC_18535 0.69 +0.3
565,709 - ynjB MCAODC_18535 0.73 -1.4

Or see this region's nucleotide sequence