Strain Fitness in Escherichia coli ECRC101 around MCAODC_18195

Experiment: WM_TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiK and ydiL are separated by 428 nucleotidesydiL and ydiM are separated by 99 nucleotides MCAODC_18185: ydiK - AI-2E family transporter YdiK, at 498,055 to 499,167 ydiK MCAODC_18195: ydiL - Uncharacterized protein YdiL, at 499,596 to 499,952 ydiL MCAODC_18200: ydiM - Inner membrane transport protein YdiM, at 500,052 to 501,266 ydiM Position (kb) 499 500Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 498.768 kb on - strand, within ydiKat 498.772 kb on + strand, within ydiKat 498.773 kb on - strand, within ydiKat 498.773 kb on - strand, within ydiKat 498.794 kb on + strand, within ydiKat 498.893 kb on + strand, within ydiKat 499.038 kb on + strand, within ydiKat 499.165 kb on + strandat 499.165 kb on + strandat 499.165 kb on + strandat 499.250 kb on - strandat 499.266 kb on + strandat 499.267 kb on - strandat 499.270 kb on - strandat 499.342 kb on - strandat 499.347 kb on + strandat 499.423 kb on + strandat 499.424 kb on - strandat 499.517 kb on - strandat 499.556 kb on + strandat 499.557 kb on - strandat 499.557 kb on - strandat 499.557 kb on - strandat 499.563 kb on - strandat 499.563 kb on - strandat 499.574 kb on + strandat 499.644 kb on - strand, within ydiLat 499.899 kb on + strand, within ydiLat 499.899 kb on + strand, within ydiLat 499.981 kb on + strandat 500.044 kb on + strandat 500.068 kb on - strandat 500.193 kb on - strand, within ydiMat 500.295 kb on + strand, within ydiMat 500.295 kb on + strand, within ydiMat 500.296 kb on - strand, within ydiMat 500.339 kb on + strand, within ydiMat 500.401 kb on - strand, within ydiMat 500.567 kb on + strand, within ydiMat 500.623 kb on + strand, within ydiMat 500.696 kb on - strand, within ydiMat 500.698 kb on - strand, within ydiMat 500.698 kb on - strand, within ydiMat 500.778 kb on + strand, within ydiMat 500.783 kb on + strand, within ydiMat 500.784 kb on - strand, within ydiM

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP9
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498,768 - ydiK MCAODC_18185 0.64 +0.0
498,772 + ydiK MCAODC_18185 0.64 +0.2
498,773 - ydiK MCAODC_18185 0.65 +1.9
498,773 - ydiK MCAODC_18185 0.65 -1.5
498,794 + ydiK MCAODC_18185 0.66 -0.1
498,893 + ydiK MCAODC_18185 0.75 +0.0
499,038 + ydiK MCAODC_18185 0.88 -1.6
499,165 + -0.9
499,165 + +1.2
499,165 + +1.5
499,250 - -0.9
499,266 + +0.9
499,267 - +0.3
499,270 - -1.0
499,342 - +1.3
499,347 + -0.6
499,423 + +1.1
499,424 - -0.6
499,517 - -0.9
499,556 + +0.4
499,557 - -0.7
499,557 - +1.1
499,557 - +0.6
499,563 - -0.6
499,563 - +0.6
499,574 + -1.6
499,644 - ydiL MCAODC_18195 0.13 +0.9
499,899 + ydiL MCAODC_18195 0.85 +0.2
499,899 + ydiL MCAODC_18195 0.85 +1.2
499,981 + -0.4
500,044 + +0.3
500,068 - -0.8
500,193 - ydiM MCAODC_18200 0.12 +1.3
500,295 + ydiM MCAODC_18200 0.20 -2.4
500,295 + ydiM MCAODC_18200 0.20 +0.2
500,296 - ydiM MCAODC_18200 0.20 +0.3
500,339 + ydiM MCAODC_18200 0.24 -0.4
500,401 - ydiM MCAODC_18200 0.29 -0.6
500,567 + ydiM MCAODC_18200 0.42 -3.6
500,623 + ydiM MCAODC_18200 0.47 +0.8
500,696 - ydiM MCAODC_18200 0.53 -0.6
500,698 - ydiM MCAODC_18200 0.53 -0.5
500,698 - ydiM MCAODC_18200 0.53 -0.6
500,778 + ydiM MCAODC_18200 0.60 -0.4
500,783 + ydiM MCAODC_18200 0.60 +1.7
500,784 - ydiM MCAODC_18200 0.60 +0.9

Or see this region's nucleotide sequence