Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Val_trna and Val_trna are separated by 4 nucleotides Val_trna and ydhR are separated by 107 nucleotides ydhR and ydhS are separated by 125 nucleotides ydhS and ydhT are separated by 11 nucleotides ydhT and ydhU are separated by 51 nucleotides
MCAODC_18060: Val_trna - tRNA-Val(gac), at 475,415 to 475,491
_trna
MCAODC_18065: Val_trna - tRNA-Val(gac), at 475,496 to 475,572
_trna
MCAODC_18075: ydhR - monooxygenase, at 475,680 to 475,985
ydhR
MCAODC_18080: ydhS - FAD-NAD(P)-binding protein, at 476,111 to 477,715
ydhS
MCAODC_18085: ydhT - protein YdhT, at 477,727 to 478,491
ydhT
MCAODC_18090: ydhU - Putative cytochrome YdhU, at 478,543 to 479,328
ydhU
Position (kb) 476
477
478 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 475.139 kb on + strand at 475.145 kb on + strand at 475.146 kb on - strand at 475.146 kb on - strand at 475.149 kb on + strand at 475.334 kb on + strand at 475.406 kb on + strand at 475.406 kb on + strand at 475.422 kb on + strand at 475.641 kb on + strand at 475.641 kb on + strand at 475.748 kb on + strand, within ydhR at 476.106 kb on + strand at 476.173 kb on - strand at 476.279 kb on - strand, within ydhS at 476.580 kb on + strand, within ydhS at 476.637 kb on - strand, within ydhS at 476.943 kb on - strand, within ydhS at 477.018 kb on + strand, within ydhS at 477.269 kb on + strand, within ydhS at 477.303 kb on + strand, within ydhS at 477.304 kb on - strand, within ydhS at 477.370 kb on + strand, within ydhS at 477.466 kb on + strand, within ydhS at 477.466 kb on + strand, within ydhS at 477.536 kb on + strand, within ydhS at 477.538 kb on + strand, within ydhS at 477.539 kb on - strand, within ydhS at 477.726 kb on - strand at 477.756 kb on + strand at 477.836 kb on + strand, within ydhT at 477.837 kb on - strand, within ydhT at 477.870 kb on + strand, within ydhT at 477.932 kb on - strand, within ydhT at 477.932 kb on - strand, within ydhT at 477.932 kb on - strand, within ydhT at 477.932 kb on - strand, within ydhT at 477.932 kb on - strand, within ydhT at 478.029 kb on + strand, within ydhT at 478.180 kb on - strand, within ydhT at 478.180 kb on - strand, within ydhT at 478.234 kb on - strand, within ydhT at 478.383 kb on - strand, within ydhT at 478.383 kb on - strand, within ydhT at 478.410 kb on + strand, within ydhT at 478.449 kb on - strand at 478.644 kb on + strand, within ydhU
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 475,139 + -0.3 475,145 + -1.8 475,146 - +1.2 475,146 - +0.6 475,149 + -1.5 475,334 + +1.4 475,406 + -0.9 475,406 + -1.0 475,422 + -0.3 475,641 + -1.8 475,641 + +0.0 475,748 + ydhR MCAODC_18075 0.22 +1.3 476,106 + -1.9 476,173 - +0.7 476,279 - ydhS MCAODC_18080 0.10 +0.5 476,580 + ydhS MCAODC_18080 0.29 +0.0 476,637 - ydhS MCAODC_18080 0.33 -2.5 476,943 - ydhS MCAODC_18080 0.52 +0.6 477,018 + ydhS MCAODC_18080 0.57 -0.1 477,269 + ydhS MCAODC_18080 0.72 +0.7 477,303 + ydhS MCAODC_18080 0.74 -0.0 477,304 - ydhS MCAODC_18080 0.74 -1.0 477,370 + ydhS MCAODC_18080 0.78 -0.5 477,466 + ydhS MCAODC_18080 0.84 +0.4 477,466 + ydhS MCAODC_18080 0.84 +3.8 477,536 + ydhS MCAODC_18080 0.89 -1.9 477,538 + ydhS MCAODC_18080 0.89 -0.6 477,539 - ydhS MCAODC_18080 0.89 -0.4 477,726 - -0.3 477,756 + -1.5 477,836 + ydhT MCAODC_18085 0.14 -1.0 477,837 - ydhT MCAODC_18085 0.14 +0.4 477,870 + ydhT MCAODC_18085 0.19 -2.7 477,932 - ydhT MCAODC_18085 0.27 +1.1 477,932 - ydhT MCAODC_18085 0.27 -0.6 477,932 - ydhT MCAODC_18085 0.27 -1.1 477,932 - ydhT MCAODC_18085 0.27 +2.5 477,932 - ydhT MCAODC_18085 0.27 -0.8 478,029 + ydhT MCAODC_18085 0.39 +0.8 478,180 - ydhT MCAODC_18085 0.59 +0.9 478,180 - ydhT MCAODC_18085 0.59 -0.1 478,234 - ydhT MCAODC_18085 0.66 -1.6 478,383 - ydhT MCAODC_18085 0.86 -0.3 478,383 - ydhT MCAODC_18085 0.86 +0.1 478,410 + ydhT MCAODC_18085 0.89 +0.0 478,449 - +0.9 478,644 + ydhU MCAODC_18090 0.13 +1.0
Or see this region's nucleotide sequence