Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdtK and ydhQ are separated by 40 nucleotides ydhQ and Val_trna are separated by 307 nucleotides Val_trna and Val_trna are separated by 4 nucleotides Val_trna and ydhR are separated by 107 nucleotides
MCAODC_18050: mdtK - multidrug efflux MATE transporter MdtK, at 472,437 to 473,810
mdtK
MCAODC_18055: ydhQ - Uncharacterized protein YdhQ, at 473,851 to 475,107
ydhQ
MCAODC_18060: Val_trna - tRNA-Val(gac), at 475,415 to 475,491
_trna
MCAODC_18065: Val_trna - tRNA-Val(gac), at 475,496 to 475,572
_trna
MCAODC_18075: ydhR - monooxygenase, at 475,680 to 475,985
ydhR
Position (kb) 473
474
475
476 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 472.962 kb on + strand, within mdtK at 472.962 kb on + strand, within mdtK at 472.962 kb on + strand, within mdtK at 472.962 kb on + strand, within mdtK at 472.963 kb on - strand, within mdtK at 472.963 kb on - strand, within mdtK at 472.963 kb on - strand, within mdtK at 473.037 kb on + strand, within mdtK at 473.037 kb on + strand, within mdtK at 473.067 kb on + strand, within mdtK at 473.067 kb on + strand, within mdtK at 473.221 kb on + strand, within mdtK at 473.394 kb on - strand, within mdtK at 473.466 kb on + strand, within mdtK at 473.578 kb on - strand, within mdtK at 473.601 kb on + strand, within mdtK at 473.647 kb on - strand, within mdtK at 473.682 kb on - strand at 473.711 kb on + strand at 473.738 kb on + strand at 474.250 kb on + strand, within ydhQ at 474.353 kb on - strand, within ydhQ at 474.353 kb on - strand, within ydhQ at 474.353 kb on - strand, within ydhQ at 474.406 kb on - strand, within ydhQ at 474.438 kb on - strand, within ydhQ at 474.468 kb on - strand, within ydhQ at 474.489 kb on + strand, within ydhQ at 474.490 kb on - strand, within ydhQ at 474.543 kb on + strand, within ydhQ at 474.544 kb on - strand, within ydhQ at 474.544 kb on - strand, within ydhQ at 474.544 kb on - strand, within ydhQ at 474.644 kb on - strand, within ydhQ at 474.644 kb on - strand, within ydhQ at 474.770 kb on + strand, within ydhQ at 474.770 kb on + strand, within ydhQ at 474.771 kb on - strand, within ydhQ at 474.771 kb on - strand, within ydhQ at 474.829 kb on - strand, within ydhQ at 474.837 kb on + strand, within ydhQ at 474.915 kb on - strand, within ydhQ at 474.915 kb on - strand, within ydhQ at 475.024 kb on - strand at 475.024 kb on - strand at 475.139 kb on + strand at 475.145 kb on + strand at 475.146 kb on - strand at 475.146 kb on - strand at 475.149 kb on + strand at 475.334 kb on + strand at 475.406 kb on + strand at 475.406 kb on + strand at 475.422 kb on + strand at 475.641 kb on + strand at 475.641 kb on + strand at 475.748 kb on + strand, within ydhR at 476.106 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 472,962 + mdtK MCAODC_18050 0.38 -0.2 472,962 + mdtK MCAODC_18050 0.38 -0.8 472,962 + mdtK MCAODC_18050 0.38 +0.1 472,962 + mdtK MCAODC_18050 0.38 +0.9 472,963 - mdtK MCAODC_18050 0.38 +0.3 472,963 - mdtK MCAODC_18050 0.38 +1.7 472,963 - mdtK MCAODC_18050 0.38 +0.6 473,037 + mdtK MCAODC_18050 0.44 -0.5 473,037 + mdtK MCAODC_18050 0.44 +1.3 473,067 + mdtK MCAODC_18050 0.46 +0.6 473,067 + mdtK MCAODC_18050 0.46 +1.1 473,221 + mdtK MCAODC_18050 0.57 +0.3 473,394 - mdtK MCAODC_18050 0.70 +0.1 473,466 + mdtK MCAODC_18050 0.75 +1.3 473,578 - mdtK MCAODC_18050 0.83 +1.1 473,601 + mdtK MCAODC_18050 0.85 -1.3 473,647 - mdtK MCAODC_18050 0.88 -1.2 473,682 - -1.0 473,711 + +0.4 473,738 + +0.2 474,250 + ydhQ MCAODC_18055 0.32 +0.5 474,353 - ydhQ MCAODC_18055 0.40 -2.1 474,353 - ydhQ MCAODC_18055 0.40 +0.7 474,353 - ydhQ MCAODC_18055 0.40 +1.3 474,406 - ydhQ MCAODC_18055 0.44 +0.1 474,438 - ydhQ MCAODC_18055 0.47 +1.3 474,468 - ydhQ MCAODC_18055 0.49 +1.1 474,489 + ydhQ MCAODC_18055 0.51 +0.2 474,490 - ydhQ MCAODC_18055 0.51 +0.6 474,543 + ydhQ MCAODC_18055 0.55 +2.9 474,544 - ydhQ MCAODC_18055 0.55 -2.1 474,544 - ydhQ MCAODC_18055 0.55 +0.5 474,544 - ydhQ MCAODC_18055 0.55 +0.8 474,644 - ydhQ MCAODC_18055 0.63 -0.1 474,644 - ydhQ MCAODC_18055 0.63 -2.0 474,770 + ydhQ MCAODC_18055 0.73 +0.5 474,770 + ydhQ MCAODC_18055 0.73 -0.1 474,771 - ydhQ MCAODC_18055 0.73 -0.4 474,771 - ydhQ MCAODC_18055 0.73 +0.1 474,829 - ydhQ MCAODC_18055 0.78 -0.5 474,837 + ydhQ MCAODC_18055 0.78 +1.5 474,915 - ydhQ MCAODC_18055 0.85 -2.6 474,915 - ydhQ MCAODC_18055 0.85 -0.0 475,024 - +0.8 475,024 - +0.5 475,139 + -0.3 475,145 + -1.8 475,146 - +1.2 475,146 - +0.6 475,149 + -1.5 475,334 + +1.4 475,406 + -0.9 475,406 + -1.0 475,422 + -0.3 475,641 + -1.8 475,641 + +0.0 475,748 + ydhR MCAODC_18075 0.22 +1.3 476,106 + -1.9
Or see this region's nucleotide sequence