Strain Fitness in Escherichia coli ECRC101 around MCAODC_17935

Experiment: WM_TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntanmK and slyB are separated by 272 nucleotidesslyB and slyA are separated by 46 nucleotidesslyA and ydhI are separated by 200 nucleotidesydhI and ydhJ are separated by 2 nucleotides MCAODC_17925: anmK - anhydro-N-acetylmuramic acid kinase, at 447,489 to 448,598 anmK MCAODC_17930: slyB - outer membrane lipoprotein SlyB, at 448,871 to 449,338 slyB MCAODC_17935: slyA - transcriptional regulator SlyA, at 449,385 to 449,819 slyA MCAODC_17940: ydhI - Uncharacterized protein YdhI, at 450,020 to 450,256 ydhI MCAODC_17945: ydhJ - Uncharacterized protein YdhJ, at 450,259 to 451,116 ydhJ Position (kb) 449 450Strain fitness (log2 ratio) -3 -2 -1 0 1at 448.642 kb on - strandat 448.656 kb on + strandat 448.699 kb on + strandat 448.700 kb on - strandat 448.713 kb on + strandat 448.735 kb on + strandat 448.736 kb on - strandat 448.751 kb on + strandat 448.789 kb on + strandat 448.789 kb on + strandat 448.790 kb on - strandat 448.805 kb on + strandat 448.805 kb on + strandat 448.805 kb on + strandat 448.805 kb on + strandat 448.805 kb on + strandat 448.806 kb on - strandat 448.812 kb on + strandat 448.814 kb on + strandat 448.815 kb on - strandat 448.815 kb on - strandat 448.884 kb on + strandat 448.930 kb on + strand, within slyBat 448.955 kb on + strand, within slyBat 448.955 kb on + strand, within slyBat 448.956 kb on - strand, within slyBat 449.014 kb on - strand, within slyBat 449.014 kb on - strand, within slyBat 449.098 kb on + strand, within slyBat 449.160 kb on + strand, within slyBat 449.233 kb on + strand, within slyBat 449.233 kb on + strand, within slyBat 449.250 kb on + strand, within slyBat 449.250 kb on + strand, within slyBat 449.295 kb on + strandat 449.295 kb on + strandat 449.340 kb on + strandat 449.553 kb on - strand, within slyAat 449.709 kb on + strand, within slyAat 449.761 kb on - strand, within slyAat 449.776 kb on - strandat 449.869 kb on + strandat 449.870 kb on - strandat 449.885 kb on + strandat 449.885 kb on + strandat 449.930 kb on + strandat 449.972 kb on + strandat 449.993 kb on - strandat 449.993 kb on - strandat 449.994 kb on + strandat 450.138 kb on + strand, within ydhIat 450.139 kb on - strand, within ydhIat 450.139 kb on - strand, within ydhIat 450.397 kb on - strand, within ydhJat 450.435 kb on + strand, within ydhJat 450.437 kb on + strand, within ydhJat 450.747 kb on + strand, within ydhJat 450.747 kb on + strand, within ydhJ

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP9
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448,642 - +0.7
448,656 + -0.5
448,699 + +1.0
448,700 - +0.3
448,713 + -1.3
448,735 + +0.2
448,736 - +0.7
448,751 + -1.2
448,789 + -1.1
448,789 + +0.3
448,790 - +0.6
448,805 + -0.7
448,805 + -0.9
448,805 + -3.0
448,805 + -2.5
448,805 + -0.4
448,806 - -1.1
448,812 + -0.1
448,814 + -1.8
448,815 - +0.6
448,815 - -0.5
448,884 + -0.0
448,930 + slyB MCAODC_17930 0.13 -0.3
448,955 + slyB MCAODC_17930 0.18 -0.2
448,955 + slyB MCAODC_17930 0.18 +0.4
448,956 - slyB MCAODC_17930 0.18 +1.2
449,014 - slyB MCAODC_17930 0.31 -1.8
449,014 - slyB MCAODC_17930 0.31 -0.9
449,098 + slyB MCAODC_17930 0.49 +0.5
449,160 + slyB MCAODC_17930 0.62 +1.3
449,233 + slyB MCAODC_17930 0.77 +0.2
449,233 + slyB MCAODC_17930 0.77 -0.2
449,250 + slyB MCAODC_17930 0.81 -1.2
449,250 + slyB MCAODC_17930 0.81 +0.7
449,295 + +0.6
449,295 + -0.1
449,340 + -0.8
449,553 - slyA MCAODC_17935 0.39 +0.2
449,709 + slyA MCAODC_17935 0.74 +1.4
449,761 - slyA MCAODC_17935 0.86 +0.6
449,776 - +0.1
449,869 + +0.9
449,870 - +0.5
449,885 + -2.0
449,885 + +0.9
449,930 + +0.3
449,972 + -1.3
449,993 - -0.7
449,993 - -0.9
449,994 + +0.6
450,138 + ydhI MCAODC_17940 0.50 +0.8
450,139 - ydhI MCAODC_17940 0.50 -0.2
450,139 - ydhI MCAODC_17940 0.50 -2.4
450,397 - ydhJ MCAODC_17945 0.16 +0.1
450,435 + ydhJ MCAODC_17945 0.21 +0.2
450,437 + ydhJ MCAODC_17945 0.21 +1.0
450,747 + ydhJ MCAODC_17945 0.57 -1.0
450,747 + ydhJ MCAODC_17945 0.57 +1.4

Or see this region's nucleotide sequence