Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynfF and dmsB are separated by 10 nucleotides dmsB and ynfH are separated by 1 nucleotides ynfH and dmsD are separated by 42 nucleotides dmsD and clcB are separated by 193 nucleotides
MCAODC_17640: ynfF - putative dimethyl sulfoxide reductase chain YnfF, at 389,654 to 392,050
ynfF
MCAODC_17645: dmsB - dimethylsulfoxide reductase subunit B, at 392,061 to 392,678
dmsB
MCAODC_17650: ynfH - Anaerobic dimethyl sulfoxide reductase chain YnfH, at 392,680 to 393,534
ynfH
MCAODC_17655: dmsD - Tat proofreading chaperone DmsD, at 393,577 to 394,191
dmsD
MCAODC_17660: clcB - voltage-gated ClC-type chloride channel ClcB, at 394,385 to 395,641
clcB
Position (kb) 392
393
394 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 391.835 kb on - strand at 391.835 kb on - strand at 391.930 kb on + strand at 391.931 kb on - strand at 392.111 kb on + strand at 392.184 kb on + strand, within dmsB at 392.244 kb on + strand, within dmsB at 392.261 kb on + strand, within dmsB at 392.479 kb on + strand, within dmsB at 392.479 kb on + strand, within dmsB at 392.480 kb on - strand, within dmsB at 392.677 kb on - strand at 392.975 kb on + strand, within ynfH at 392.976 kb on - strand, within ynfH at 393.115 kb on - strand, within ynfH at 393.127 kb on - strand, within ynfH at 393.127 kb on - strand, within ynfH at 393.168 kb on - strand, within ynfH at 393.365 kb on + strand, within ynfH at 393.365 kb on + strand, within ynfH at 393.366 kb on - strand, within ynfH at 393.371 kb on + strand, within ynfH at 393.383 kb on + strand, within ynfH at 393.438 kb on + strand, within ynfH at 393.493 kb on + strand at 393.644 kb on - strand, within dmsD at 393.719 kb on + strand, within dmsD at 393.720 kb on - strand, within dmsD at 394.157 kb on + strand at 394.272 kb on + strand at 394.360 kb on - strand at 394.367 kb on + strand at 394.367 kb on + strand at 394.468 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 391,835 - +2.2 391,835 - -0.4 391,930 + -0.3 391,931 - +0.2 392,111 + +4.0 392,184 + dmsB MCAODC_17645 0.20 -0.2 392,244 + dmsB MCAODC_17645 0.30 -1.8 392,261 + dmsB MCAODC_17645 0.32 +1.4 392,479 + dmsB MCAODC_17645 0.68 +0.9 392,479 + dmsB MCAODC_17645 0.68 +0.3 392,480 - dmsB MCAODC_17645 0.68 -3.2 392,677 - -0.2 392,975 + ynfH MCAODC_17650 0.35 -2.1 392,976 - ynfH MCAODC_17650 0.35 -0.1 393,115 - ynfH MCAODC_17650 0.51 +0.7 393,127 - ynfH MCAODC_17650 0.52 -0.4 393,127 - ynfH MCAODC_17650 0.52 +0.5 393,168 - ynfH MCAODC_17650 0.57 -1.2 393,365 + ynfH MCAODC_17650 0.80 +0.1 393,365 + ynfH MCAODC_17650 0.80 -2.8 393,366 - ynfH MCAODC_17650 0.80 +0.5 393,371 + ynfH MCAODC_17650 0.81 +0.7 393,383 + ynfH MCAODC_17650 0.82 +0.9 393,438 + ynfH MCAODC_17650 0.89 -1.9 393,493 + +0.3 393,644 - dmsD MCAODC_17655 0.11 +0.3 393,719 + dmsD MCAODC_17655 0.23 -1.1 393,720 - dmsD MCAODC_17655 0.23 +0.9 394,157 + -0.4 394,272 + +0.3 394,360 - +1.3 394,367 + -2.7 394,367 + -1.0 394,468 - -0.7
Or see this region's nucleotide sequence