Strain Fitness in Escherichia coli ECRC101 around MCAODC_16960

Experiment: WM_TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnleG2-3 and MCAODC_16955 are separated by 113 nucleotidesMCAODC_16955 and MCAODC_16960 are separated by 1 nucleotidesMCAODC_16960 and lomR are separated by 64 nucleotideslomR and MCAODC_16970 are separated by 67 nucleotides MCAODC_16950: nleG2-3 - DUF1076 domain-containing protein, at 297,716 to 298,291 nleG2-3 MCAODC_16955: MCAODC_16955 - phage tail protein, at 298,405 to 298,674 _16955 MCAODC_16960: MCAODC_16960 - Tail fiber protein, at 298,676 to 299,989 _16960 MCAODC_16965: lomR - Ail/Lom family protein, at 300,054 to 300,653 lomR MCAODC_16970: MCAODC_16970 - Phage-related protein, tail protein J, at 300,721 to 303,231 _16970 Position (kb) 298 299 300Strain fitness (log2 ratio) -1 0 1at 298.055 kb on + strand, within nleG2-3at 298.091 kb on - strand, within nleG2-3at 298.157 kb on - strand, within nleG2-3at 298.327 kb on + strandat 298.327 kb on + strandat 298.331 kb on + strandat 298.332 kb on - strandat 298.337 kb on + strandat 298.353 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP9
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298,055 + nleG2-3 MCAODC_16950 0.59 +0.6
298,091 - nleG2-3 MCAODC_16950 0.65 -0.4
298,157 - nleG2-3 MCAODC_16950 0.77 +0.4
298,327 + +0.6
298,327 + +0.3
298,331 + +0.1
298,332 - -1.0
298,337 + -1.3
298,353 + +0.9

Or see this region's nucleotide sequence