Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt marR and marA are separated by 19 nucleotides marA and marB are separated by 31 nucleotides marB and eamA are separated by 30 nucleotides eamA and ydeE are separated by 194 nucleotides
MCAODC_16845: marR - multiple antibiotic resistance transcriptional regulator MarR, at 281,105 to 281,539
marR
MCAODC_16850: marA - MDR efflux pump AcrAB transcriptional activator MarA, at 281,559 to 281,942
marA
MCAODC_16855: marB - multiple antibiotic resistance protein MarB, at 281,974 to 282,192
marB
MCAODC_16860: eamA - O-acetylserine/cysteine exporter, at 282,223 to 283,122
eamA
MCAODC_16865: ydeE - efflux MFS transporter YdeE, at 283,317 to 284,504
ydeE
Position (kb) 282
283
284 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 281.233 kb on + strand, within marR at 281.233 kb on + strand, within marR at 281.266 kb on + strand, within marR at 281.269 kb on + strand, within marR at 281.344 kb on + strand, within marR at 281.397 kb on + strand, within marR at 281.445 kb on + strand, within marR at 281.553 kb on - strand at 281.727 kb on + strand, within marA at 281.728 kb on - strand, within marA at 281.873 kb on + strand, within marA at 281.941 kb on - strand at 281.973 kb on + strand at 281.996 kb on + strand, within marB at 282.173 kb on - strand at 282.174 kb on + strand at 282.175 kb on - strand at 282.175 kb on - strand at 282.191 kb on - strand at 282.191 kb on - strand at 282.191 kb on - strand at 282.193 kb on + strand at 282.193 kb on + strand at 282.193 kb on + strand at 282.194 kb on - strand at 282.196 kb on - strand at 282.233 kb on - strand at 282.276 kb on - strand at 282.377 kb on - strand, within eamA at 282.407 kb on + strand, within eamA at 282.446 kb on - strand, within eamA at 282.446 kb on - strand, within eamA at 282.575 kb on - strand, within eamA at 282.664 kb on - strand, within eamA at 283.039 kb on - strand at 283.039 kb on - strand at 283.068 kb on + strand at 283.079 kb on - strand at 283.094 kb on - strand at 283.210 kb on - strand at 283.221 kb on - strand at 283.221 kb on - strand at 283.221 kb on - strand at 283.221 kb on - strand at 283.221 kb on - strand at 283.231 kb on + strand at 283.231 kb on + strand at 283.232 kb on - strand at 283.232 kb on - strand at 283.232 kb on - strand at 283.242 kb on - strand at 283.262 kb on + strand at 283.263 kb on - strand at 283.279 kb on - strand at 283.369 kb on + strand at 283.403 kb on + strand at 283.478 kb on + strand, within ydeE at 283.539 kb on + strand, within ydeE at 283.541 kb on + strand, within ydeE at 283.644 kb on + strand, within ydeE at 283.925 kb on - strand, within ydeE at 284.010 kb on + strand, within ydeE
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 281,233 + marR MCAODC_16845 0.29 +0.3 281,233 + marR MCAODC_16845 0.29 +0.4 281,266 + marR MCAODC_16845 0.37 -0.2 281,269 + marR MCAODC_16845 0.38 +1.5 281,344 + marR MCAODC_16845 0.55 -1.1 281,397 + marR MCAODC_16845 0.67 -0.0 281,445 + marR MCAODC_16845 0.78 -0.5 281,553 - +2.3 281,727 + marA MCAODC_16850 0.44 +0.3 281,728 - marA MCAODC_16850 0.44 -0.2 281,873 + marA MCAODC_16850 0.82 +0.6 281,941 - +1.2 281,973 + +0.1 281,996 + marB MCAODC_16855 0.10 +1.1 282,173 - -2.4 282,174 + +0.7 282,175 - -0.2 282,175 - +0.8 282,191 - -1.0 282,191 - -0.7 282,191 - +1.2 282,193 + +0.3 282,193 + -3.0 282,193 + -0.3 282,194 - +0.1 282,196 - -1.0 282,233 - +0.5 282,276 - +0.8 282,377 - eamA MCAODC_16860 0.17 +0.0 282,407 + eamA MCAODC_16860 0.20 +0.6 282,446 - eamA MCAODC_16860 0.25 -0.3 282,446 - eamA MCAODC_16860 0.25 +2.8 282,575 - eamA MCAODC_16860 0.39 +1.1 282,664 - eamA MCAODC_16860 0.49 +0.0 283,039 - -0.4 283,039 - +0.3 283,068 + -1.2 283,079 - +0.3 283,094 - +0.3 283,210 - -0.1 283,221 - +1.1 283,221 - -0.9 283,221 - +1.3 283,221 - -2.1 283,221 - +0.8 283,231 + +0.8 283,231 + -0.1 283,232 - +0.6 283,232 - -1.2 283,232 - +1.4 283,242 - -0.2 283,262 + +0.3 283,263 - +0.2 283,279 - -1.6 283,369 + -2.0 283,403 + -1.6 283,478 + ydeE MCAODC_16865 0.14 -1.4 283,539 + ydeE MCAODC_16865 0.19 +0.7 283,541 + ydeE MCAODC_16865 0.19 +0.9 283,644 + ydeE MCAODC_16865 0.28 -1.1 283,925 - ydeE MCAODC_16865 0.51 -0.1 284,010 + ydeE MCAODC_16865 0.58 -2.7
Or see this region's nucleotide sequence