Strain Fitness in Escherichia coli ECRC101 around MCAODC_16280

Experiment: WM_TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrg and ydcI are separated by 37 nucleotidesydcI and ydcJ are separated by 216 nucleotides MCAODC_16275: trg - methyl-accepting chemotaxis protein Trg, at 147,542 to 149,182 trg MCAODC_16280: ydcI - Uncharacterized HTH-type transcriptional regulator YdcI, at 149,220 to 150,143 ydcI MCAODC_16285: ydcJ - Uncharacterized protein YdcJ, at 150,360 to 151,703 ydcJ Position (kb) 149 150 151Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 148.320 kb on + strand, within trgat 148.332 kb on + strand, within trgat 148.397 kb on + strand, within trgat 148.397 kb on + strand, within trgat 148.605 kb on + strand, within trgat 148.927 kb on + strand, within trgat 148.928 kb on - strand, within trgat 149.088 kb on + strandat 149.106 kb on + strandat 149.164 kb on + strandat 149.287 kb on - strandat 149.299 kb on - strandat 149.402 kb on - strand, within ydcIat 149.402 kb on - strand, within ydcIat 149.402 kb on - strand, within ydcIat 149.402 kb on - strand, within ydcIat 149.487 kb on + strand, within ydcIat 149.488 kb on - strand, within ydcIat 149.488 kb on - strand, within ydcIat 149.491 kb on - strand, within ydcIat 149.562 kb on + strand, within ydcIat 149.568 kb on + strand, within ydcIat 149.785 kb on - strand, within ydcIat 149.785 kb on - strand, within ydcIat 149.816 kb on + strand, within ydcIat 149.821 kb on - strand, within ydcIat 149.846 kb on + strand, within ydcIat 149.847 kb on - strand, within ydcIat 149.901 kb on + strand, within ydcIat 149.943 kb on - strand, within ydcIat 150.085 kb on - strandat 150.085 kb on - strandat 150.093 kb on - strandat 150.093 kb on - strandat 150.131 kb on + strandat 150.153 kb on + strandat 150.154 kb on - strandat 150.238 kb on - strandat 150.324 kb on + strandat 150.325 kb on - strandat 150.359 kb on + strandat 150.423 kb on + strandat 150.423 kb on + strandat 150.423 kb on + strandat 150.424 kb on - strandat 150.466 kb on + strandat 150.645 kb on + strand, within ydcJat 150.646 kb on - strand, within ydcJat 150.749 kb on - strand, within ydcJat 150.765 kb on - strand, within ydcJat 150.847 kb on + strand, within ydcJat 150.855 kb on + strand, within ydcJat 150.856 kb on - strand, within ydcJat 150.947 kb on - strand, within ydcJat 150.960 kb on + strand, within ydcJat 151.043 kb on + strand, within ydcJat 151.044 kb on - strand, within ydcJ

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP9
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148,320 + trg MCAODC_16275 0.47 +0.5
148,332 + trg MCAODC_16275 0.48 +1.2
148,397 + trg MCAODC_16275 0.52 -0.4
148,397 + trg MCAODC_16275 0.52 -0.1
148,605 + trg MCAODC_16275 0.65 -0.6
148,927 + trg MCAODC_16275 0.84 +0.9
148,928 - trg MCAODC_16275 0.84 +0.5
149,088 + +1.0
149,106 + -0.6
149,164 + +0.1
149,287 - +0.5
149,299 - +0.0
149,402 - ydcI MCAODC_16280 0.20 -1.2
149,402 - ydcI MCAODC_16280 0.20 +0.4
149,402 - ydcI MCAODC_16280 0.20 -0.1
149,402 - ydcI MCAODC_16280 0.20 +1.0
149,487 + ydcI MCAODC_16280 0.29 -1.2
149,488 - ydcI MCAODC_16280 0.29 -0.4
149,488 - ydcI MCAODC_16280 0.29 +0.8
149,491 - ydcI MCAODC_16280 0.29 -1.0
149,562 + ydcI MCAODC_16280 0.37 -0.8
149,568 + ydcI MCAODC_16280 0.38 -3.0
149,785 - ydcI MCAODC_16280 0.61 +1.0
149,785 - ydcI MCAODC_16280 0.61 +0.8
149,816 + ydcI MCAODC_16280 0.65 +0.1
149,821 - ydcI MCAODC_16280 0.65 -0.0
149,846 + ydcI MCAODC_16280 0.68 +1.9
149,847 - ydcI MCAODC_16280 0.68 -0.6
149,901 + ydcI MCAODC_16280 0.74 -1.6
149,943 - ydcI MCAODC_16280 0.78 +0.3
150,085 - +0.3
150,085 - +1.0
150,093 - +0.6
150,093 - -1.2
150,131 + +0.2
150,153 + -0.1
150,154 - -1.0
150,238 - +0.9
150,324 + +0.1
150,325 - -1.2
150,359 + -0.6
150,423 + +0.1
150,423 + +0.7
150,423 + -1.1
150,424 - -0.5
150,466 + +0.2
150,645 + ydcJ MCAODC_16285 0.21 -0.1
150,646 - ydcJ MCAODC_16285 0.21 +0.2
150,749 - ydcJ MCAODC_16285 0.29 +0.8
150,765 - ydcJ MCAODC_16285 0.30 -2.3
150,847 + ydcJ MCAODC_16285 0.36 +0.3
150,855 + ydcJ MCAODC_16285 0.37 +2.1
150,856 - ydcJ MCAODC_16285 0.37 -0.1
150,947 - ydcJ MCAODC_16285 0.44 +1.3
150,960 + ydcJ MCAODC_16285 0.45 -1.6
151,043 + ydcJ MCAODC_16285 0.51 +2.3
151,044 - ydcJ MCAODC_16285 0.51 -0.1

Or see this region's nucleotide sequence