Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt wcaG and MCAODC_15990 are separated by 20 nucleotides MCAODC_15990 and MCAODC_15995 overlap by 62 nucleotides MCAODC_15995 and ycjY overlap by 1 nucleotides
MCAODC_15985: wcaG - NAD-dependent dehydratase, at 88,691 to 89,329
wcaG
MCAODC_15990: MCAODC_15990 - Hydrolase, at 89,350 to 89,973
_15990
MCAODC_15995: MCAODC_15995 - Peptidase-S15 domain-containing protein, at 89,912 to 90,280
_15995
MCAODC_16000: ycjY - Uncharacterized protein YcjY, at 90,280 to 91,200
ycjY
Position (kb) 89
90
91 Strain fitness (log2 ratio) -2
-1
0
1
2 at 89.011 kb on - strand, within wcaG at 89.044 kb on + strand, within wcaG at 89.089 kb on + strand, within wcaG at 89.118 kb on + strand, within wcaG at 89.126 kb on - strand, within wcaG at 89.183 kb on - strand, within wcaG at 89.183 kb on - strand, within wcaG at 89.194 kb on + strand, within wcaG at 89.238 kb on - strand, within wcaG at 89.238 kb on - strand, within wcaG at 89.418 kb on - strand, within MCAODC_15990 at 89.540 kb on - strand, within MCAODC_15990 at 89.665 kb on - strand, within MCAODC_15990 at 89.823 kb on - strand, within MCAODC_15990 at 89.860 kb on - strand, within MCAODC_15990 at 89.868 kb on + strand, within MCAODC_15990 at 89.871 kb on + strand, within MCAODC_15990 at 89.887 kb on - strand, within MCAODC_15990 at 89.974 kb on - strand, within MCAODC_15995 at 90.011 kb on - strand, within MCAODC_15995 at 90.084 kb on + strand, within MCAODC_15995 at 90.085 kb on - strand, within MCAODC_15995 at 90.085 kb on - strand, within MCAODC_15995 at 90.151 kb on + strand, within MCAODC_15995 at 90.151 kb on + strand, within MCAODC_15995 at 90.152 kb on - strand, within MCAODC_15995 at 90.179 kb on - strand, within MCAODC_15995 at 90.308 kb on - strand at 90.348 kb on - strand at 90.414 kb on - strand, within ycjY at 90.496 kb on - strand, within ycjY at 90.510 kb on - strand, within ycjY at 90.510 kb on - strand, within ycjY at 90.514 kb on - strand, within ycjY at 90.514 kb on - strand, within ycjY at 90.651 kb on + strand, within ycjY at 90.673 kb on - strand, within ycjY at 90.676 kb on - strand, within ycjY at 90.834 kb on + strand, within ycjY at 90.834 kb on + strand, within ycjY at 90.834 kb on + strand, within ycjY at 90.835 kb on - strand, within ycjY at 90.835 kb on - strand, within ycjY at 90.888 kb on - strand, within ycjY at 90.998 kb on + strand, within ycjY at 91.006 kb on - strand, within ycjY at 91.040 kb on + strand, within ycjY at 91.040 kb on + strand, within ycjY at 91.040 kb on + strand, within ycjY at 91.040 kb on + strand, within ycjY at 91.041 kb on - strand, within ycjY at 91.133 kb on + strand at 91.164 kb on + strand at 91.192 kb on - strand at 91.244 kb on + strand at 91.251 kb on - strand at 91.252 kb on + strand at 91.252 kb on + strand at 91.253 kb on - strand at 91.253 kb on - strand at 91.266 kb on + strand at 91.266 kb on + strand at 91.266 kb on + strand at 91.267 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 89,011 - wcaG MCAODC_15985 0.50 -1.0 89,044 + wcaG MCAODC_15985 0.55 +1.7 89,089 + wcaG MCAODC_15985 0.62 -2.7 89,118 + wcaG MCAODC_15985 0.67 -0.1 89,126 - wcaG MCAODC_15985 0.68 -0.6 89,183 - wcaG MCAODC_15985 0.77 -1.3 89,183 - wcaG MCAODC_15985 0.77 -0.4 89,194 + wcaG MCAODC_15985 0.79 -0.3 89,238 - wcaG MCAODC_15985 0.86 -2.6 89,238 - wcaG MCAODC_15985 0.86 +0.3 89,418 - MCAODC_15990 0.11 +0.9 89,540 - MCAODC_15990 0.30 +1.2 89,665 - MCAODC_15990 0.50 -2.6 89,823 - MCAODC_15990 0.76 -0.9 89,860 - MCAODC_15990 0.82 +0.2 89,868 + MCAODC_15990 0.83 -0.2 89,871 + MCAODC_15990 0.83 -0.5 89,887 - MCAODC_15990 0.86 -0.4 89,974 - MCAODC_15995 0.17 +1.5 90,011 - MCAODC_15995 0.27 +0.8 90,084 + MCAODC_15995 0.47 -1.2 90,085 - MCAODC_15995 0.47 +0.5 90,085 - MCAODC_15995 0.47 +0.2 90,151 + MCAODC_15995 0.65 +2.2 90,151 + MCAODC_15995 0.65 +0.6 90,152 - MCAODC_15995 0.65 +0.2 90,179 - MCAODC_15995 0.72 +0.3 90,308 - +0.4 90,348 - +1.0 90,414 - ycjY MCAODC_16000 0.15 -0.3 90,496 - ycjY MCAODC_16000 0.23 -0.1 90,510 - ycjY MCAODC_16000 0.25 +1.5 90,510 - ycjY MCAODC_16000 0.25 -0.3 90,514 - ycjY MCAODC_16000 0.25 +1.4 90,514 - ycjY MCAODC_16000 0.25 +1.0 90,651 + ycjY MCAODC_16000 0.40 -0.6 90,673 - ycjY MCAODC_16000 0.43 -0.9 90,676 - ycjY MCAODC_16000 0.43 +2.0 90,834 + ycjY MCAODC_16000 0.60 -0.5 90,834 + ycjY MCAODC_16000 0.60 -0.9 90,834 + ycjY MCAODC_16000 0.60 -0.4 90,835 - ycjY MCAODC_16000 0.60 -1.0 90,835 - ycjY MCAODC_16000 0.60 +0.4 90,888 - ycjY MCAODC_16000 0.66 +0.9 90,998 + ycjY MCAODC_16000 0.78 +1.3 91,006 - ycjY MCAODC_16000 0.79 -1.7 91,040 + ycjY MCAODC_16000 0.83 +1.0 91,040 + ycjY MCAODC_16000 0.83 -2.2 91,040 + ycjY MCAODC_16000 0.83 +0.7 91,040 + ycjY MCAODC_16000 0.83 +0.3 91,041 - ycjY MCAODC_16000 0.83 +0.8 91,133 + +1.0 91,164 + -0.1 91,192 - -0.2 91,244 + +1.3 91,251 - -1.0 91,252 + -1.7 91,252 + +1.0 91,253 - +0.8 91,253 - +0.1 91,266 + +1.3 91,266 + +0.8 91,266 + -1.4 91,267 - -0.0
Or see this region's nucleotide sequence