Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_14085 and yfaU are separated by 67 nucleotides yfaU and yfaD are separated by 40 nucleotides yfaD and glpC are separated by 192 nucleotides
MCAODC_14085: MCAODC_14085 - MFS transporter, at 2,758,905 to 2,759,657
_14085
MCAODC_14090: yfaU - 2-keto-3-deoxy-L-rhamnonate aldolase, at 2,759,725 to 2,760,477
yfaU
MCAODC_14095: yfaD - ISNCY family transposase, at 2,760,518 to 2,761,444
yfaD
MCAODC_14100: glpC - anaerobic glycerol-3-phosphate dehydrogenase subunit GlpC, at 2,761,637 to 2,762,827
glpC
Position (kb)
2760
2761
2762 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2759.536 kb on + strand, within MCAODC_14085 at 2759.655 kb on + strand at 2759.655 kb on + strand at 2759.655 kb on + strand at 2759.655 kb on + strand at 2759.655 kb on + strand at 2759.655 kb on + strand at 2759.656 kb on - strand at 2759.659 kb on + strand at 2759.659 kb on + strand at 2759.659 kb on + strand at 2759.659 kb on + strand at 2759.660 kb on - strand at 2759.660 kb on - strand at 2759.688 kb on + strand at 2759.701 kb on - strand at 2759.712 kb on - strand at 2759.761 kb on + strand at 2759.761 kb on + strand at 2759.761 kb on + strand at 2759.761 kb on + strand at 2759.762 kb on - strand at 2759.762 kb on - strand at 2759.791 kb on + strand at 2759.846 kb on - strand, within yfaU at 2759.855 kb on + strand, within yfaU at 2759.855 kb on + strand, within yfaU at 2759.856 kb on - strand, within yfaU at 2759.873 kb on - strand, within yfaU at 2759.910 kb on + strand, within yfaU at 2759.923 kb on - strand, within yfaU at 2759.923 kb on - strand, within yfaU at 2759.923 kb on - strand, within yfaU at 2760.050 kb on + strand, within yfaU at 2760.051 kb on - strand, within yfaU at 2760.051 kb on - strand, within yfaU at 2760.119 kb on + strand, within yfaU at 2760.268 kb on - strand, within yfaU at 2760.336 kb on + strand, within yfaU at 2760.461 kb on + strand at 2760.468 kb on + strand at 2760.472 kb on + strand at 2760.472 kb on + strand at 2760.473 kb on - strand at 2760.473 kb on - strand at 2760.515 kb on + strand at 2760.515 kb on + strand at 2760.516 kb on - strand at 2760.616 kb on + strand, within yfaD at 2760.619 kb on + strand, within yfaD at 2760.653 kb on + strand, within yfaD at 2760.696 kb on - strand, within yfaD at 2760.709 kb on + strand, within yfaD at 2760.710 kb on - strand, within yfaD at 2760.710 kb on - strand, within yfaD at 2760.716 kb on + strand, within yfaD at 2760.717 kb on - strand, within yfaD at 2760.731 kb on + strand, within yfaD at 2760.760 kb on + strand, within yfaD at 2760.761 kb on - strand, within yfaD at 2760.805 kb on + strand, within yfaD at 2760.805 kb on + strand, within yfaD at 2760.806 kb on - strand, within yfaD at 2760.818 kb on + strand, within yfaD at 2760.875 kb on - strand, within yfaD at 2760.926 kb on + strand, within yfaD at 2760.926 kb on + strand, within yfaD at 2760.927 kb on - strand, within yfaD at 2760.927 kb on - strand, within yfaD at 2760.927 kb on - strand, within yfaD at 2760.967 kb on + strand, within yfaD at 2760.967 kb on + strand, within yfaD at 2760.968 kb on - strand, within yfaD at 2761.077 kb on + strand, within yfaD at 2761.077 kb on + strand, within yfaD at 2761.078 kb on - strand, within yfaD at 2761.114 kb on - strand, within yfaD at 2761.212 kb on + strand, within yfaD at 2761.212 kb on + strand, within yfaD at 2761.212 kb on + strand, within yfaD at 2761.213 kb on - strand, within yfaD at 2761.213 kb on - strand, within yfaD at 2761.213 kb on - strand, within yfaD at 2761.213 kb on - strand, within yfaD at 2761.216 kb on + strand, within yfaD at 2761.216 kb on + strand, within yfaD at 2761.216 kb on + strand, within yfaD at 2761.217 kb on - strand, within yfaD at 2761.295 kb on - strand, within yfaD at 2761.295 kb on - strand, within yfaD at 2761.394 kb on - strand at 2761.394 kb on - strand at 2761.406 kb on + strand at 2761.462 kb on + strand at 2761.466 kb on + strand at 2761.466 kb on + strand at 2761.467 kb on - strand at 2761.566 kb on + strand at 2761.566 kb on + strand at 2761.567 kb on - strand at 2761.567 kb on - strand at 2761.567 kb on - strand at 2761.567 kb on - strand at 2761.638 kb on + strand at 2761.659 kb on - strand at 2761.659 kb on - strand at 2761.712 kb on - strand at 2761.758 kb on - strand, within glpC at 2761.800 kb on + strand, within glpC at 2761.800 kb on + strand, within glpC at 2761.800 kb on + strand, within glpC at 2761.800 kb on + strand, within glpC at 2761.825 kb on + strand, within glpC at 2761.834 kb on + strand, within glpC at 2761.862 kb on + strand, within glpC at 2761.883 kb on - strand, within glpC at 2761.902 kb on + strand, within glpC at 2762.029 kb on + strand, within glpC at 2762.095 kb on + strand, within glpC at 2762.095 kb on + strand, within glpC at 2762.096 kb on - strand, within glpC at 2762.096 kb on - strand, within glpC at 2762.159 kb on + strand, within glpC at 2762.159 kb on + strand, within glpC at 2762.160 kb on - strand, within glpC at 2762.167 kb on + strand, within glpC at 2762.168 kb on - strand, within glpC at 2762.188 kb on + strand, within glpC at 2762.250 kb on - strand, within glpC at 2762.278 kb on + strand, within glpC at 2762.279 kb on - strand, within glpC at 2762.279 kb on - strand, within glpC at 2762.282 kb on + strand, within glpC at 2762.282 kb on + strand, within glpC at 2762.310 kb on + strand, within glpC at 2762.311 kb on - strand, within glpC at 2762.350 kb on + strand, within glpC at 2762.410 kb on - strand, within glpC
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 2,759,536 + MCAODC_14085 0.84 -1.6 2,759,655 + +0.0 2,759,655 + -1.4 2,759,655 + +0.0 2,759,655 + -0.6 2,759,655 + -0.2 2,759,655 + +0.8 2,759,656 - +0.7 2,759,659 + +1.1 2,759,659 + +0.1 2,759,659 + +0.8 2,759,659 + -0.2 2,759,660 - +1.7 2,759,660 - +0.6 2,759,688 + +0.9 2,759,701 - +0.9 2,759,712 - -0.1 2,759,761 + +0.2 2,759,761 + -1.3 2,759,761 + +0.2 2,759,761 + +0.1 2,759,762 - -0.2 2,759,762 - +0.6 2,759,791 + -0.5 2,759,846 - yfaU MCAODC_14090 0.16 +1.0 2,759,855 + yfaU MCAODC_14090 0.17 +0.5 2,759,855 + yfaU MCAODC_14090 0.17 +1.6 2,759,856 - yfaU MCAODC_14090 0.17 -0.3 2,759,873 - yfaU MCAODC_14090 0.20 -0.7 2,759,910 + yfaU MCAODC_14090 0.25 +1.0 2,759,923 - yfaU MCAODC_14090 0.26 +0.3 2,759,923 - yfaU MCAODC_14090 0.26 +0.9 2,759,923 - yfaU MCAODC_14090 0.26 +1.5 2,760,050 + yfaU MCAODC_14090 0.43 +0.6 2,760,051 - yfaU MCAODC_14090 0.43 -1.0 2,760,051 - yfaU MCAODC_14090 0.43 +0.3 2,760,119 + yfaU MCAODC_14090 0.52 +0.4 2,760,268 - yfaU MCAODC_14090 0.72 +0.6 2,760,336 + yfaU MCAODC_14090 0.81 -0.1 2,760,461 + -1.2 2,760,468 + +0.4 2,760,472 + -1.7 2,760,472 + +0.5 2,760,473 - +1.0 2,760,473 - +0.5 2,760,515 + +1.0 2,760,515 + +0.0 2,760,516 - +1.3 2,760,616 + yfaD MCAODC_14095 0.11 +1.0 2,760,619 + yfaD MCAODC_14095 0.11 -1.2 2,760,653 + yfaD MCAODC_14095 0.15 -0.6 2,760,696 - yfaD MCAODC_14095 0.19 +0.5 2,760,709 + yfaD MCAODC_14095 0.21 +1.3 2,760,710 - yfaD MCAODC_14095 0.21 -1.2 2,760,710 - yfaD MCAODC_14095 0.21 -0.1 2,760,716 + yfaD MCAODC_14095 0.21 +3.4 2,760,717 - yfaD MCAODC_14095 0.21 -1.9 2,760,731 + yfaD MCAODC_14095 0.23 +0.7 2,760,760 + yfaD MCAODC_14095 0.26 -2.2 2,760,761 - yfaD MCAODC_14095 0.26 +0.6 2,760,805 + yfaD MCAODC_14095 0.31 +0.2 2,760,805 + yfaD MCAODC_14095 0.31 +2.0 2,760,806 - yfaD MCAODC_14095 0.31 +0.8 2,760,818 + yfaD MCAODC_14095 0.32 +1.0 2,760,875 - yfaD MCAODC_14095 0.39 +1.1 2,760,926 + yfaD MCAODC_14095 0.44 +0.2 2,760,926 + yfaD MCAODC_14095 0.44 -1.1 2,760,927 - yfaD MCAODC_14095 0.44 -0.4 2,760,927 - yfaD MCAODC_14095 0.44 +1.1 2,760,927 - yfaD MCAODC_14095 0.44 +2.0 2,760,967 + yfaD MCAODC_14095 0.48 +0.7 2,760,967 + yfaD MCAODC_14095 0.48 -0.8 2,760,968 - yfaD MCAODC_14095 0.49 +0.2 2,761,077 + yfaD MCAODC_14095 0.60 +0.8 2,761,077 + yfaD MCAODC_14095 0.60 +0.4 2,761,078 - yfaD MCAODC_14095 0.60 -0.9 2,761,114 - yfaD MCAODC_14095 0.64 +1.8 2,761,212 + yfaD MCAODC_14095 0.75 -1.5 2,761,212 + yfaD MCAODC_14095 0.75 +0.6 2,761,212 + yfaD MCAODC_14095 0.75 -0.4 2,761,213 - yfaD MCAODC_14095 0.75 +0.3 2,761,213 - yfaD MCAODC_14095 0.75 -2.6 2,761,213 - yfaD MCAODC_14095 0.75 +0.1 2,761,213 - yfaD MCAODC_14095 0.75 +0.1 2,761,216 + yfaD MCAODC_14095 0.75 -2.0 2,761,216 + yfaD MCAODC_14095 0.75 -0.3 2,761,216 + yfaD MCAODC_14095 0.75 -0.1 2,761,217 - yfaD MCAODC_14095 0.75 -0.8 2,761,295 - yfaD MCAODC_14095 0.84 +0.8 2,761,295 - yfaD MCAODC_14095 0.84 +0.2 2,761,394 - -2.1 2,761,394 - +0.4 2,761,406 + -0.4 2,761,462 + +1.3 2,761,466 + +0.9 2,761,466 + -0.5 2,761,467 - +0.7 2,761,566 + +0.6 2,761,566 + +1.8 2,761,567 - +0.9 2,761,567 - -0.6 2,761,567 - +1.6 2,761,567 - +1.5 2,761,638 + +0.2 2,761,659 - -0.0 2,761,659 - +1.1 2,761,712 - +0.8 2,761,758 - glpC MCAODC_14100 0.10 +0.6 2,761,800 + glpC MCAODC_14100 0.14 +0.9 2,761,800 + glpC MCAODC_14100 0.14 +1.8 2,761,800 + glpC MCAODC_14100 0.14 +2.3 2,761,800 + glpC MCAODC_14100 0.14 +0.1 2,761,825 + glpC MCAODC_14100 0.16 -0.2 2,761,834 + glpC MCAODC_14100 0.17 -0.0 2,761,862 + glpC MCAODC_14100 0.19 +0.5 2,761,883 - glpC MCAODC_14100 0.21 +0.6 2,761,902 + glpC MCAODC_14100 0.22 -0.4 2,762,029 + glpC MCAODC_14100 0.33 -0.7 2,762,095 + glpC MCAODC_14100 0.38 +0.5 2,762,095 + glpC MCAODC_14100 0.38 -0.5 2,762,096 - glpC MCAODC_14100 0.39 +0.1 2,762,096 - glpC MCAODC_14100 0.39 -1.2 2,762,159 + glpC MCAODC_14100 0.44 +0.0 2,762,159 + glpC MCAODC_14100 0.44 -0.3 2,762,160 - glpC MCAODC_14100 0.44 +1.5 2,762,167 + glpC MCAODC_14100 0.45 +2.1 2,762,168 - glpC MCAODC_14100 0.45 +0.5 2,762,188 + glpC MCAODC_14100 0.46 +0.8 2,762,250 - glpC MCAODC_14100 0.51 +0.2 2,762,278 + glpC MCAODC_14100 0.54 -0.9 2,762,279 - glpC MCAODC_14100 0.54 +0.1 2,762,279 - glpC MCAODC_14100 0.54 +1.0 2,762,282 + glpC MCAODC_14100 0.54 +0.1 2,762,282 + glpC MCAODC_14100 0.54 +1.9 2,762,310 + glpC MCAODC_14100 0.57 +0.7 2,762,311 - glpC MCAODC_14100 0.57 -1.2 2,762,350 + glpC MCAODC_14100 0.60 +0.0 2,762,410 - glpC MCAODC_14100 0.65 -0.0
Or see this region's nucleotide sequence