Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tra8 and MCAODC_11525 are separated by 268 nucleotides MCAODC_11525 and MCAODC_11530 overlap by 8 nucleotides MCAODC_11530 and MCAODC_11535 overlap by 26 nucleotides MCAODC_11535 and MCAODC_11540 overlap by 4 nucleotides MCAODC_11540 and MCAODC_11545 overlap by 4 nucleotides
MCAODC_11520: tra8 - IS30 family transposase, at 2,293,659 to 2,294,414
tra8
MCAODC_11525: MCAODC_11525 - hypothetical protein, at 2,294,683 to 2,294,799
_11525
MCAODC_11530: MCAODC_11530 - endonuclease, at 2,294,792 to 2,295,358
_11530
MCAODC_11535: MCAODC_11535 - protein NinG, at 2,295,333 to 2,295,944
_11535
MCAODC_11540: MCAODC_11540 - Serine/threonine-protein phosphatase, at 2,295,941 to 2,296,606
_11540
MCAODC_11545: MCAODC_11545 - Antitermination protein Q, at 2,296,603 to 2,297,226
_11545
Position (kb)
2295
2296 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2294.819 kb on - strand at 2294.825 kb on - strand at 2295.082 kb on + strand, within MCAODC_11530 at 2295.210 kb on + strand, within MCAODC_11530 at 2295.229 kb on + strand, within MCAODC_11530 at 2295.229 kb on + strand, within MCAODC_11530 at 2295.230 kb on - strand, within MCAODC_11530 at 2295.267 kb on + strand, within MCAODC_11530 at 2295.296 kb on + strand, within MCAODC_11530 at 2295.356 kb on + strand at 2295.357 kb on - strand at 2295.408 kb on - strand, within MCAODC_11535 at 2295.431 kb on - strand, within MCAODC_11535 at 2295.431 kb on - strand, within MCAODC_11535 at 2295.450 kb on - strand, within MCAODC_11535 at 2296.713 kb on + strand, within MCAODC_11545 at 2296.754 kb on + strand, within MCAODC_11545 at 2296.800 kb on + strand, within MCAODC_11545 at 2296.807 kb on + strand, within MCAODC_11545 at 2296.807 kb on + strand, within MCAODC_11545 at 2296.807 kb on + strand, within MCAODC_11545 at 2296.808 kb on - strand, within MCAODC_11545 at 2296.808 kb on - strand, within MCAODC_11545 at 2296.808 kb on - strand, within MCAODC_11545 at 2296.844 kb on - strand, within MCAODC_11545 at 2296.872 kb on + strand, within MCAODC_11545 at 2296.872 kb on + strand, within MCAODC_11545 at 2296.873 kb on - strand, within MCAODC_11545 at 2296.873 kb on - strand, within MCAODC_11545 at 2296.873 kb on - strand, within MCAODC_11545 at 2296.886 kb on + strand, within MCAODC_11545 at 2296.922 kb on - strand, within MCAODC_11545
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 2,294,819 - -0.5 2,294,825 - -0.1 2,295,082 + MCAODC_11530 0.51 -1.8 2,295,210 + MCAODC_11530 0.74 -0.4 2,295,229 + MCAODC_11530 0.77 +0.9 2,295,229 + MCAODC_11530 0.77 +0.6 2,295,230 - MCAODC_11530 0.77 +0.5 2,295,267 + MCAODC_11530 0.84 -0.4 2,295,296 + MCAODC_11530 0.89 +0.9 2,295,356 + +1.4 2,295,357 - -2.0 2,295,408 - MCAODC_11535 0.12 +0.1 2,295,431 - MCAODC_11535 0.16 +2.6 2,295,431 - MCAODC_11535 0.16 +1.9 2,295,450 - MCAODC_11535 0.19 +0.3 2,296,713 + MCAODC_11545 0.18 +0.3 2,296,754 + MCAODC_11545 0.24 +0.1 2,296,800 + MCAODC_11545 0.32 +1.6 2,296,807 + MCAODC_11545 0.33 +0.3 2,296,807 + MCAODC_11545 0.33 +0.5 2,296,807 + MCAODC_11545 0.33 -0.1 2,296,808 - MCAODC_11545 0.33 +0.5 2,296,808 - MCAODC_11545 0.33 -0.6 2,296,808 - MCAODC_11545 0.33 -1.0 2,296,844 - MCAODC_11545 0.39 -1.0 2,296,872 + MCAODC_11545 0.43 +0.0 2,296,872 + MCAODC_11545 0.43 +0.4 2,296,873 - MCAODC_11545 0.43 -1.1 2,296,873 - MCAODC_11545 0.43 -1.0 2,296,873 - MCAODC_11545 0.43 +1.2 2,296,886 + MCAODC_11545 0.45 -0.0 2,296,922 - MCAODC_11545 0.51 +0.0
Or see this region's nucleotide sequence