Strain Fitness in Escherichia coli ECRC101 around MCAODC_11535

Experiment: WM_TP9

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttra8 and MCAODC_11525 are separated by 268 nucleotidesMCAODC_11525 and MCAODC_11530 overlap by 8 nucleotidesMCAODC_11530 and MCAODC_11535 overlap by 26 nucleotidesMCAODC_11535 and MCAODC_11540 overlap by 4 nucleotidesMCAODC_11540 and MCAODC_11545 overlap by 4 nucleotides MCAODC_11520: tra8 - IS30 family transposase, at 2,293,659 to 2,294,414 tra8 MCAODC_11525: MCAODC_11525 - hypothetical protein, at 2,294,683 to 2,294,799 _11525 MCAODC_11530: MCAODC_11530 - endonuclease, at 2,294,792 to 2,295,358 _11530 MCAODC_11535: MCAODC_11535 - protein NinG, at 2,295,333 to 2,295,944 _11535 MCAODC_11540: MCAODC_11540 - Serine/threonine-protein phosphatase, at 2,295,941 to 2,296,606 _11540 MCAODC_11545: MCAODC_11545 - Antitermination protein Q, at 2,296,603 to 2,297,226 _11545 Position (kb) 2295 2296Strain fitness (log2 ratio) -2 -1 0 1 2at 2294.819 kb on - strandat 2294.825 kb on - strandat 2295.082 kb on + strand, within MCAODC_11530at 2295.210 kb on + strand, within MCAODC_11530at 2295.229 kb on + strand, within MCAODC_11530at 2295.229 kb on + strand, within MCAODC_11530at 2295.230 kb on - strand, within MCAODC_11530at 2295.267 kb on + strand, within MCAODC_11530at 2295.296 kb on + strand, within MCAODC_11530at 2295.356 kb on + strandat 2295.357 kb on - strandat 2295.408 kb on - strand, within MCAODC_11535at 2295.431 kb on - strand, within MCAODC_11535at 2295.431 kb on - strand, within MCAODC_11535at 2295.450 kb on - strand, within MCAODC_11535at 2296.713 kb on + strand, within MCAODC_11545at 2296.754 kb on + strand, within MCAODC_11545at 2296.800 kb on + strand, within MCAODC_11545at 2296.807 kb on + strand, within MCAODC_11545at 2296.807 kb on + strand, within MCAODC_11545at 2296.807 kb on + strand, within MCAODC_11545at 2296.808 kb on - strand, within MCAODC_11545at 2296.808 kb on - strand, within MCAODC_11545at 2296.808 kb on - strand, within MCAODC_11545at 2296.844 kb on - strand, within MCAODC_11545at 2296.872 kb on + strand, within MCAODC_11545at 2296.872 kb on + strand, within MCAODC_11545at 2296.873 kb on - strand, within MCAODC_11545at 2296.873 kb on - strand, within MCAODC_11545at 2296.873 kb on - strand, within MCAODC_11545at 2296.886 kb on + strand, within MCAODC_11545at 2296.922 kb on - strand, within MCAODC_11545

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP9
remove
2,294,819 - -0.5
2,294,825 - -0.1
2,295,082 + MCAODC_11530 0.51 -1.8
2,295,210 + MCAODC_11530 0.74 -0.4
2,295,229 + MCAODC_11530 0.77 +0.9
2,295,229 + MCAODC_11530 0.77 +0.6
2,295,230 - MCAODC_11530 0.77 +0.5
2,295,267 + MCAODC_11530 0.84 -0.4
2,295,296 + MCAODC_11530 0.89 +0.9
2,295,356 + +1.4
2,295,357 - -2.0
2,295,408 - MCAODC_11535 0.12 +0.1
2,295,431 - MCAODC_11535 0.16 +2.6
2,295,431 - MCAODC_11535 0.16 +1.9
2,295,450 - MCAODC_11535 0.19 +0.3
2,296,713 + MCAODC_11545 0.18 +0.3
2,296,754 + MCAODC_11545 0.24 +0.1
2,296,800 + MCAODC_11545 0.32 +1.6
2,296,807 + MCAODC_11545 0.33 +0.3
2,296,807 + MCAODC_11545 0.33 +0.5
2,296,807 + MCAODC_11545 0.33 -0.1
2,296,808 - MCAODC_11545 0.33 +0.5
2,296,808 - MCAODC_11545 0.33 -0.6
2,296,808 - MCAODC_11545 0.33 -1.0
2,296,844 - MCAODC_11545 0.39 -1.0
2,296,872 + MCAODC_11545 0.43 +0.0
2,296,872 + MCAODC_11545 0.43 +0.4
2,296,873 - MCAODC_11545 0.43 -1.1
2,296,873 - MCAODC_11545 0.43 -1.0
2,296,873 - MCAODC_11545 0.43 +1.2
2,296,886 + MCAODC_11545 0.45 -0.0
2,296,922 - MCAODC_11545 0.51 +0.0

Or see this region's nucleotide sequence