Strain Fitness in Escherichia coli ECRC101 around MCAODC_08230

Experiment: WM_TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaccC and accB are separated by 10 nucleotidesaccB and acuI are separated by 977 nucleotides MCAODC_08225: accC - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,643,969 to 1,645,318 accC MCAODC_08230: accB - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 1,645,329 to 1,645,799 accB MCAODC_08235: acuI - putative acrylyl-CoA reductase AcuI, at 1,646,777 to 1,647,751 acuI Position (kb) 1645 1646Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1645.882 kb on - strandat 1645.882 kb on - strandat 1645.882 kb on - strandat 1646.073 kb on + strandat 1646.113 kb on + strandat 1646.137 kb on - strandat 1646.137 kb on - strandat 1646.143 kb on + strandat 1646.143 kb on + strandat 1646.148 kb on - strandat 1646.221 kb on + strandat 1646.221 kb on + strandat 1646.228 kb on + strandat 1646.228 kb on + strandat 1646.228 kb on + strandat 1646.228 kb on + strandat 1646.228 kb on + strandat 1646.228 kb on + strandat 1646.229 kb on - strandat 1646.282 kb on - strandat 1646.301 kb on + strandat 1646.301 kb on + strandat 1646.301 kb on + strandat 1646.302 kb on - strandat 1646.302 kb on - strandat 1646.302 kb on - strandat 1646.307 kb on - strandat 1646.307 kb on - strandat 1646.342 kb on - strandat 1646.342 kb on - strandat 1646.342 kb on - strandat 1646.389 kb on + strandat 1646.389 kb on + strandat 1646.389 kb on + strandat 1646.402 kb on + strandat 1646.403 kb on - strandat 1646.403 kb on - strandat 1646.441 kb on + strandat 1646.441 kb on + strandat 1646.442 kb on - strandat 1646.442 kb on - strandat 1646.442 kb on - strandat 1646.442 kb on - strandat 1646.445 kb on + strandat 1646.445 kb on + strandat 1646.485 kb on + strandat 1646.508 kb on + strandat 1646.508 kb on + strandat 1646.508 kb on + strandat 1646.508 kb on + strandat 1646.509 kb on - strandat 1646.509 kb on - strandat 1646.512 kb on + strandat 1646.512 kb on + strandat 1646.513 kb on - strandat 1646.513 kb on - strandat 1646.520 kb on + strandat 1646.526 kb on + strandat 1646.527 kb on - strandat 1646.550 kb on + strandat 1646.550 kb on + strandat 1646.550 kb on + strandat 1646.550 kb on + strandat 1646.551 kb on - strandat 1646.574 kb on + strandat 1646.575 kb on - strandat 1646.580 kb on + strandat 1646.581 kb on - strandat 1646.583 kb on + strandat 1646.583 kb on + strandat 1646.583 kb on + strandat 1646.584 kb on - strandat 1646.599 kb on + strandat 1646.600 kb on - strandat 1646.617 kb on + strandat 1646.618 kb on - strandat 1646.660 kb on + strandat 1646.660 kb on + strandat 1646.660 kb on + strandat 1646.660 kb on + strandat 1646.730 kb on - strandat 1646.757 kb on + strandat 1646.757 kb on + strandat 1646.758 kb on - strandat 1646.760 kb on + strandat 1646.760 kb on + strandat 1646.760 kb on + strandat 1646.760 kb on + strandat 1646.761 kb on - strandat 1646.761 kb on - strandat 1646.761 kb on - strandat 1646.761 kb on - strandat 1646.770 kb on + strandat 1646.770 kb on + strandat 1646.771 kb on - strandat 1646.778 kb on + strandat 1646.782 kb on + strandat 1646.783 kb on - strandat 1646.783 kb on - strandat 1646.783 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP9
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1,645,882 - -0.4
1,645,882 - -0.1
1,645,882 - -0.4
1,646,073 + -0.2
1,646,113 + -1.9
1,646,137 - -1.2
1,646,137 - -0.6
1,646,143 + -0.1
1,646,143 + +0.5
1,646,148 - +0.1
1,646,221 + -0.1
1,646,221 + -0.5
1,646,228 + +0.2
1,646,228 + +0.7
1,646,228 + +0.4
1,646,228 + +0.6
1,646,228 + +0.3
1,646,228 + +0.2
1,646,229 - -1.9
1,646,282 - -0.4
1,646,301 + -0.1
1,646,301 + +0.2
1,646,301 + -1.7
1,646,302 - -0.3
1,646,302 - +0.0
1,646,302 - -0.2
1,646,307 - +0.6
1,646,307 - +1.2
1,646,342 - +0.6
1,646,342 - +0.5
1,646,342 - +0.7
1,646,389 + +1.3
1,646,389 + +0.7
1,646,389 + -1.3
1,646,402 + +0.5
1,646,403 - +0.2
1,646,403 - -0.5
1,646,441 + +0.4
1,646,441 + -2.5
1,646,442 - -0.0
1,646,442 - -0.4
1,646,442 - -0.3
1,646,442 - -0.8
1,646,445 + +0.3
1,646,445 + +0.4
1,646,485 + +0.3
1,646,508 + +1.1
1,646,508 + +0.0
1,646,508 + -0.1
1,646,508 + -1.5
1,646,509 - +0.4
1,646,509 - -0.6
1,646,512 + -2.9
1,646,512 + -0.1
1,646,513 - +0.2
1,646,513 - -0.6
1,646,520 + +0.1
1,646,526 + +0.9
1,646,527 - +0.4
1,646,550 + -1.3
1,646,550 + +0.0
1,646,550 + +0.7
1,646,550 + -2.2
1,646,551 - +0.7
1,646,574 + +0.2
1,646,575 - +0.4
1,646,580 + +0.2
1,646,581 - -0.0
1,646,583 + -0.4
1,646,583 + +1.2
1,646,583 + +0.8
1,646,584 - -0.1
1,646,599 + -0.2
1,646,600 - -0.2
1,646,617 + -0.0
1,646,618 - +0.7
1,646,660 + +2.4
1,646,660 + -0.7
1,646,660 + -0.3
1,646,660 + +0.2
1,646,730 - -3.4
1,646,757 + -1.7
1,646,757 + -0.1
1,646,758 - -0.2
1,646,760 + -2.3
1,646,760 + -0.7
1,646,760 + +0.1
1,646,760 + +1.2
1,646,761 - -2.2
1,646,761 - -0.1
1,646,761 - +0.9
1,646,761 - +0.1
1,646,770 + +0.8
1,646,770 + +0.3
1,646,771 - -0.7
1,646,778 + +0.1
1,646,782 + +0.7
1,646,783 - +0.3
1,646,783 - +0.7
1,646,783 - -0.1

Or see this region's nucleotide sequence