Strain Fitness in Escherichia coli ECRC101 around MCAODC_04035
Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | WM_TP9 |
---|---|---|---|---|---|
remove | |||||
812,636 | + | btuB | MCAODC_04030 | 0.67 | -1.3 |
812,636 | + | btuB | MCAODC_04030 | 0.67 | +0.7 |
812,637 | - | btuB | MCAODC_04030 | 0.67 | -1.8 |
812,637 | - | btuB | MCAODC_04030 | 0.67 | +1.2 |
812,641 | + | btuB | MCAODC_04030 | 0.67 | -1.5 |
812,642 | - | btuB | MCAODC_04030 | 0.67 | -1.1 |
812,656 | + | btuB | MCAODC_04030 | 0.68 | +1.1 |
812,656 | + | btuB | MCAODC_04030 | 0.68 | +0.3 |
812,657 | - | btuB | MCAODC_04030 | 0.68 | +0.3 |
812,657 | - | btuB | MCAODC_04030 | 0.68 | -1.6 |
812,666 | + | btuB | MCAODC_04030 | 0.68 | -0.4 |
812,674 | + | btuB | MCAODC_04030 | 0.69 | -0.4 |
812,675 | - | btuB | MCAODC_04030 | 0.69 | +1.5 |
812,723 | + | btuB | MCAODC_04030 | 0.71 | +0.3 |
812,724 | - | btuB | MCAODC_04030 | 0.72 | -0.1 |
812,734 | + | btuB | MCAODC_04030 | 0.72 | -2.3 |
812,734 | + | btuB | MCAODC_04030 | 0.72 | +0.4 |
812,734 | + | btuB | MCAODC_04030 | 0.72 | +0.3 |
812,734 | + | btuB | MCAODC_04030 | 0.72 | -0.5 |
812,734 | + | btuB | MCAODC_04030 | 0.72 | -0.9 |
812,734 | + | btuB | MCAODC_04030 | 0.72 | -0.3 |
812,735 | - | btuB | MCAODC_04030 | 0.72 | -0.6 |
812,735 | - | btuB | MCAODC_04030 | 0.72 | -0.4 |
812,735 | - | btuB | MCAODC_04030 | 0.72 | -2.0 |
812,743 | + | btuB | MCAODC_04030 | 0.73 | -0.1 |
812,747 | + | btuB | MCAODC_04030 | 0.73 | -1.2 |
812,747 | + | btuB | MCAODC_04030 | 0.73 | +0.6 |
812,747 | + | btuB | MCAODC_04030 | 0.73 | -3.1 |
812,747 | + | btuB | MCAODC_04030 | 0.73 | -1.2 |
812,747 | + | btuB | MCAODC_04030 | 0.73 | -0.2 |
812,747 | + | btuB | MCAODC_04030 | 0.73 | -0.9 |
812,747 | + | btuB | MCAODC_04030 | 0.73 | +0.5 |
812,747 | + | btuB | MCAODC_04030 | 0.73 | +0.4 |
812,747 | + | btuB | MCAODC_04030 | 0.73 | -0.6 |
812,747 | + | btuB | MCAODC_04030 | 0.73 | +0.1 |
812,747 | + | btuB | MCAODC_04030 | 0.73 | +1.0 |
812,747 | + | btuB | MCAODC_04030 | 0.73 | -0.3 |
812,748 | - | btuB | MCAODC_04030 | 0.73 | +0.2 |
812,748 | - | btuB | MCAODC_04030 | 0.73 | -0.0 |
812,748 | - | btuB | MCAODC_04030 | 0.73 | -0.0 |
812,748 | - | btuB | MCAODC_04030 | 0.73 | -0.3 |
812,748 | - | btuB | MCAODC_04030 | 0.73 | +0.1 |
812,748 | - | btuB | MCAODC_04030 | 0.73 | -0.7 |
812,748 | - | btuB | MCAODC_04030 | 0.73 | +0.3 |
812,748 | - | btuB | MCAODC_04030 | 0.73 | -0.3 |
812,748 | - | btuB | MCAODC_04030 | 0.73 | -0.6 |
812,748 | - | btuB | MCAODC_04030 | 0.73 | -2.1 |
812,804 | + | btuB | MCAODC_04030 | 0.76 | -0.8 |
812,804 | + | btuB | MCAODC_04030 | 0.76 | -1.7 |
812,805 | - | btuB | MCAODC_04030 | 0.76 | +0.9 |
812,805 | - | btuB | MCAODC_04030 | 0.76 | -0.1 |
812,820 | + | btuB | MCAODC_04030 | 0.77 | -2.7 |
812,820 | + | btuB | MCAODC_04030 | 0.77 | +0.4 |
812,820 | + | btuB | MCAODC_04030 | 0.77 | +1.4 |
812,820 | + | btuB | MCAODC_04030 | 0.77 | +0.2 |
812,820 | + | btuB | MCAODC_04030 | 0.77 | -1.6 |
812,821 | - | btuB | MCAODC_04030 | 0.77 | +0.3 |
812,821 | - | btuB | MCAODC_04030 | 0.77 | -0.2 |
812,821 | - | btuB | MCAODC_04030 | 0.77 | -1.0 |
812,836 | + | btuB | MCAODC_04030 | 0.78 | -0.4 |
812,837 | - | btuB | MCAODC_04030 | 0.78 | +0.4 |
812,862 | - | btuB | MCAODC_04030 | 0.79 | -1.6 |
812,863 | + | btuB | MCAODC_04030 | 0.79 | -0.5 |
812,863 | + | btuB | MCAODC_04030 | 0.79 | +0.5 |
812,863 | + | btuB | MCAODC_04030 | 0.79 | -1.5 |
812,863 | + | btuB | MCAODC_04030 | 0.79 | -0.3 |
812,863 | + | btuB | MCAODC_04030 | 0.79 | -0.2 |
812,863 | + | btuB | MCAODC_04030 | 0.79 | +0.2 |
812,864 | - | btuB | MCAODC_04030 | 0.79 | +0.3 |
812,864 | - | btuB | MCAODC_04030 | 0.79 | -0.1 |
812,864 | - | btuB | MCAODC_04030 | 0.79 | -0.5 |
812,864 | - | btuB | MCAODC_04030 | 0.79 | -0.4 |
812,864 | - | btuB | MCAODC_04030 | 0.79 | -0.4 |
812,864 | - | btuB | MCAODC_04030 | 0.79 | +0.3 |
812,864 | - | btuB | MCAODC_04030 | 0.79 | +0.2 |
812,901 | - | btuB | MCAODC_04030 | 0.81 | +1.5 |
812,940 | + | btuB | MCAODC_04030 | 0.83 | -0.1 |
812,941 | - | btuB | MCAODC_04030 | 0.83 | -0.1 |
812,941 | - | btuB | MCAODC_04030 | 0.83 | -1.3 |
812,952 | + | btuB | MCAODC_04030 | 0.84 | -0.1 |
812,953 | - | btuB | MCAODC_04030 | 0.84 | +1.1 |
812,953 | - | btuB | MCAODC_04030 | 0.84 | +1.4 |
812,987 | + | btuB | MCAODC_04030 | 0.86 | -0.0 |
812,993 | + | btuB | MCAODC_04030 | 0.86 | +0.1 |
812,993 | + | btuB | MCAODC_04030 | 0.86 | +0.6 |
812,994 | - | btuB | MCAODC_04030 | 0.86 | -0.7 |
813,159 | - | +0.9 | |||
813,251 | + | -0.6 | |||
813,251 | + | -2.4 | |||
813,266 | - | +0.2 | |||
813,266 | - | +0.3 | |||
813,294 | + | -1.0 | |||
813,294 | + | -2.4 | |||
813,359 | + | -1.3 | |||
813,359 | + | +1.1 | |||
813,359 | + | -0.5 | |||
813,359 | + | -2.2 | |||
813,359 | + | -1.9 | |||
813,359 | + | -0.4 | |||
813,359 | + | -0.2 | |||
813,359 | + | +0.4 | |||
813,359 | + | +2.5 | |||
813,359 | + | +1.0 | |||
813,359 | + | -0.3 | |||
813,359 | + | -0.7 | |||
813,359 | + | -1.7 | |||
813,359 | + | +0.8 | |||
813,359 | + | +2.1 | |||
813,359 | + | -2.3 | |||
813,359 | + | +1.2 | |||
813,360 | - | -1.1 | |||
813,360 | - | -0.5 | |||
813,360 | - | -0.7 | |||
813,360 | - | -0.5 | |||
813,360 | - | +0.1 | |||
813,360 | - | +0.1 | |||
813,360 | - | -0.3 | |||
813,360 | - | -0.0 | |||
813,360 | - | -1.4 | |||
813,360 | - | -0.9 | |||
813,364 | + | +0.3 | |||
813,365 | - | +1.2 | |||
813,367 | + | +0.2 | |||
813,367 | + | +0.0 | |||
813,368 | - | +0.4 | |||
813,368 | - | -1.8 | |||
813,368 | - | +0.4 | |||
813,472 | + | -2.8 | |||
813,472 | + | -0.1 | |||
813,472 | + | -0.2 | |||
813,473 | - | -3.6 | |||
813,473 | - | -0.5 | |||
813,473 | - | -1.3 | |||
813,473 | - | +0.1 | |||
813,473 | - | -1.5 | |||
813,473 | - | +0.3 | |||
813,508 | + | -1.4 | |||
813,508 | + | -0.1 | |||
813,508 | + | +0.7 | |||
813,509 | - | +0.2 | |||
813,530 | - | -0.5 | |||
813,541 | - | +0.8 | |||
813,580 | + | -0.5 | |||
813,581 | - | -0.3 | |||
813,611 | + | +1.1 | |||
813,611 | + | +0.4 | |||
813,612 | - | -0.5 | |||
813,647 | + | -1.5 | |||
813,647 | + | +1.4 | |||
813,647 | + | -1.2 | |||
813,647 | + | -3.6 | |||
813,648 | - | -0.0 | |||
813,648 | - | +0.1 | |||
813,648 | - | -1.1 | |||
813,660 | + | +2.7 | |||
813,688 | + | +1.4 | |||
813,688 | + | -1.1 | |||
813,689 | - | -0.3 | |||
813,689 | - | -0.3 | |||
813,689 | - | +0.8 | |||
813,689 | - | -1.6 | |||
813,795 | - | trmA | MCAODC_04035 | 0.16 | -0.4 |
813,795 | - | trmA | MCAODC_04035 | 0.16 | +0.2 |
813,904 | + | trmA | MCAODC_04035 | 0.26 | +1.1 |
813,962 | - | trmA | MCAODC_04035 | 0.31 | +0.5 |
813,987 | - | trmA | MCAODC_04035 | 0.34 | -0.5 |
813,991 | + | trmA | MCAODC_04035 | 0.34 | +0.3 |
813,992 | - | trmA | MCAODC_04035 | 0.34 | -0.3 |
814,115 | + | trmA | MCAODC_04035 | 0.45 | -1.7 |
814,115 | + | trmA | MCAODC_04035 | 0.45 | -1.2 |
814,116 | - | trmA | MCAODC_04035 | 0.45 | +1.1 |
814,116 | - | trmA | MCAODC_04035 | 0.45 | -0.1 |
814,157 | + | trmA | MCAODC_04035 | 0.49 | +0.1 |
814,158 | - | trmA | MCAODC_04035 | 0.49 | +0.5 |
814,158 | - | trmA | MCAODC_04035 | 0.49 | -1.3 |
814,158 | - | trmA | MCAODC_04035 | 0.49 | -1.2 |
814,167 | + | trmA | MCAODC_04035 | 0.50 | -0.4 |
814,233 | + | trmA | MCAODC_04035 | 0.56 | +0.5 |
814,234 | - | trmA | MCAODC_04035 | 0.56 | -0.6 |
814,257 | + | trmA | MCAODC_04035 | 0.58 | +0.2 |
814,258 | - | trmA | MCAODC_04035 | 0.58 | -1.4 |
814,268 | + | trmA | MCAODC_04035 | 0.59 | +0.8 |
814,268 | + | trmA | MCAODC_04035 | 0.59 | -0.1 |
814,269 | - | trmA | MCAODC_04035 | 0.59 | +1.0 |
814,269 | - | trmA | MCAODC_04035 | 0.59 | +0.1 |
814,365 | - | trmA | MCAODC_04035 | 0.68 | +1.2 |
814,395 | + | trmA | MCAODC_04035 | 0.71 | +0.3 |
814,395 | + | trmA | MCAODC_04035 | 0.71 | -0.8 |
814,403 | - | trmA | MCAODC_04035 | 0.71 | +0.4 |
814,409 | - | trmA | MCAODC_04035 | 0.72 | +0.6 |
814,457 | - | trmA | MCAODC_04035 | 0.76 | -0.6 |
814,479 | + | trmA | MCAODC_04035 | 0.78 | -1.0 |
814,479 | + | trmA | MCAODC_04035 | 0.78 | +0.4 |
814,479 | + | trmA | MCAODC_04035 | 0.78 | +0.3 |
814,563 | - | trmA | MCAODC_04035 | 0.86 | +3.5 |
814,570 | + | trmA | MCAODC_04035 | 0.87 | -0.3 |
814,570 | + | trmA | MCAODC_04035 | 0.87 | +0.6 |
814,570 | + | trmA | MCAODC_04035 | 0.87 | -0.6 |
814,570 | + | trmA | MCAODC_04035 | 0.87 | +0.3 |
814,570 | + | trmA | MCAODC_04035 | 0.87 | +0.9 |
814,570 | + | trmA | MCAODC_04035 | 0.87 | +0.3 |
814,571 | - | trmA | MCAODC_04035 | 0.87 | +0.4 |
814,571 | - | trmA | MCAODC_04035 | 0.87 | +1.4 |
814,577 | + | trmA | MCAODC_04035 | 0.87 | +0.2 |
814,577 | + | trmA | MCAODC_04035 | 0.87 | +0.1 |
814,577 | + | trmA | MCAODC_04035 | 0.87 | -0.1 |
814,577 | + | trmA | MCAODC_04035 | 0.87 | -0.4 |
814,577 | + | trmA | MCAODC_04035 | 0.87 | +0.1 |
814,577 | + | trmA | MCAODC_04035 | 0.87 | +1.4 |
814,577 | + | trmA | MCAODC_04035 | 0.87 | +1.0 |
814,578 | - | trmA | MCAODC_04035 | 0.87 | +0.3 |
814,578 | - | trmA | MCAODC_04035 | 0.87 | +0.1 |
814,578 | - | trmA | MCAODC_04035 | 0.87 | -0.0 |
814,578 | - | trmA | MCAODC_04035 | 0.87 | -1.2 |
814,578 | - | trmA | MCAODC_04035 | 0.87 | +0.6 |
814,578 | - | trmA | MCAODC_04035 | 0.87 | +1.8 |
814,579 | + | trmA | MCAODC_04035 | 0.87 | +0.3 |
814,580 | - | trmA | MCAODC_04035 | 0.87 | -0.2 |
814,580 | - | trmA | MCAODC_04035 | 0.87 | +0.5 |
814,624 | - | +0.5 | |||
814,624 | - | -0.2 | |||
814,698 | + | -1.5 | |||
814,698 | + | +1.5 | |||
814,698 | + | -0.2 | |||
814,699 | - | +0.9 | |||
814,699 | - | +0.7 | |||
814,715 | + | +0.5 | |||
814,715 | + | -0.2 | |||
814,758 | + | -0.1 | |||
814,777 | + | -0.7 | |||
814,813 | + | yijD | MCAODC_04040 | 0.16 | -0.1 |
814,813 | + | yijD | MCAODC_04040 | 0.16 | +1.4 |
814,814 | - | yijD | MCAODC_04040 | 0.16 | +0.2 |
814,826 | + | yijD | MCAODC_04040 | 0.19 | +0.5 |
814,843 | + | yijD | MCAODC_04040 | 0.24 | -1.1 |
814,874 | + | yijD | MCAODC_04040 | 0.33 | +0.8 |
814,884 | + | yijD | MCAODC_04040 | 0.35 | +0.2 |
814,885 | - | yijD | MCAODC_04040 | 0.36 | -1.4 |
814,892 | + | yijD | MCAODC_04040 | 0.38 | -0.8 |
814,957 | - | yijD | MCAODC_04040 | 0.56 | -1.5 |
814,957 | - | yijD | MCAODC_04040 | 0.56 | +1.1 |
814,957 | - | yijD | MCAODC_04040 | 0.56 | -2.7 |
814,974 | + | yijD | MCAODC_04040 | 0.60 | -0.3 |
814,974 | + | yijD | MCAODC_04040 | 0.60 | +0.3 |
814,997 | - | yijD | MCAODC_04040 | 0.67 | +0.0 |
815,029 | + | yijD | MCAODC_04040 | 0.76 | -1.4 |
815,047 | + | yijD | MCAODC_04040 | 0.81 | -0.7 |
815,048 | - | yijD | MCAODC_04040 | 0.81 | -1.1 |
815,054 | - | yijD | MCAODC_04040 | 0.82 | +0.0 |
815,060 | + | yijD | MCAODC_04040 | 0.84 | +1.5 |
815,089 | + | +0.1 | |||
815,089 | + | +0.3 | |||
815,089 | + | +0.3 | |||
815,090 | - | +0.8 | |||
815,090 | - | -1.3 | |||
815,090 | - | -0.4 | |||
815,090 | - | -0.6 | |||
815,095 | + | -0.4 | |||
815,095 | + | +1.1 | |||
815,096 | - | -0.1 | |||
815,096 | - | -0.3 | |||
815,118 | - | +0.9 | |||
815,143 | - | -0.7 | |||
815,178 | - | +0.5 | |||
815,180 | + | +0.2 | |||
815,180 | + | +1.3 | |||
815,180 | + | +0.8 | |||
815,180 | + | +1.1 | |||
815,180 | + | -0.4 | |||
815,181 | - | +1.1 | |||
815,227 | + | fabR | MCAODC_04045 | 0.16 | -0.9 |
815,228 | - | fabR | MCAODC_04045 | 0.16 | +0.3 |
815,351 | + | fabR | MCAODC_04045 | 0.33 | +0.5 |
815,437 | + | fabR | MCAODC_04045 | 0.46 | +1.5 |
815,437 | + | fabR | MCAODC_04045 | 0.46 | +1.0 |
815,438 | - | fabR | MCAODC_04045 | 0.46 | -1.0 |
815,438 | - | fabR | MCAODC_04045 | 0.46 | +0.6 |
815,438 | - | fabR | MCAODC_04045 | 0.46 | +0.4 |
815,464 | - | fabR | MCAODC_04045 | 0.49 | +0.6 |
815,478 | + | fabR | MCAODC_04045 | 0.51 | +0.7 |
815,479 | - | fabR | MCAODC_04045 | 0.51 | -0.2 |
815,479 | - | fabR | MCAODC_04045 | 0.51 | +0.5 |
815,554 | + | fabR | MCAODC_04045 | 0.62 | +0.4 |
815,555 | - | fabR | MCAODC_04045 | 0.62 | +1.1 |
815,561 | - | fabR | MCAODC_04045 | 0.63 | +0.7 |
815,600 | - | fabR | MCAODC_04045 | 0.69 | +0.5 |
815,695 | + | fabR | MCAODC_04045 | 0.82 | +0.5 |
815,696 | - | fabR | MCAODC_04045 | 0.82 | -0.1 |
815,696 | - | fabR | MCAODC_04045 | 0.82 | +0.3 |
815,696 | - | fabR | MCAODC_04045 | 0.82 | +0.6 |
815,696 | - | fabR | MCAODC_04045 | 0.82 | -0.2 |
Or see this region's nucleotide sequence