Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rplI and rpsR are separated by 41 nucleotides rpsR and priB are separated by 4 nucleotides priB and rpsF are separated by 6 nucleotides rpsF and yjfY are separated by 326 nucleotides yjfY and ulaF are separated by 128 nucleotides
MCAODC_02615: rplI - 50S ribosomal protein L9, at 533,782 to 534,231
rplI
MCAODC_02620: rpsR - 30S ribosomal protein S18, at 534,273 to 534,500
rpsR
MCAODC_02625: priB - primosomal replication protein N, at 534,505 to 534,819
priB
MCAODC_02630: rpsF - 30S ribosomal protein S6, at 534,826 to 535,221
rpsF
MCAODC_02635: yjfY - Uncharacterized protein YjfY, at 535,548 to 535,823
yjfY
MCAODC_02640: ulaF - L-ribulose-5-phosphate 4-epimerase UlaF, at 535,952 to 536,638
ulaF
Position (kb) 534
535
536 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 534.254 kb on - strand at 535.391 kb on - strand at 535.474 kb on + strand at 535.543 kb on + strand at 535.543 kb on + strand at 535.543 kb on + strand at 535.543 kb on + strand at 535.544 kb on - strand at 535.544 kb on - strand at 535.544 kb on - strand at 535.547 kb on + strand at 535.547 kb on + strand at 535.547 kb on + strand at 535.547 kb on + strand at 535.548 kb on - strand at 535.548 kb on - strand at 535.548 kb on - strand at 535.548 kb on - strand at 535.548 kb on - strand at 535.548 kb on - strand at 535.548 kb on - strand at 535.565 kb on - strand at 535.598 kb on + strand, within yjfY at 535.598 kb on + strand, within yjfY at 535.599 kb on - strand, within yjfY at 535.599 kb on - strand, within yjfY at 535.599 kb on - strand, within yjfY at 535.599 kb on - strand, within yjfY at 535.619 kb on + strand, within yjfY at 535.620 kb on - strand, within yjfY at 535.640 kb on + strand, within yjfY at 535.641 kb on - strand, within yjfY at 535.671 kb on + strand, within yjfY at 535.672 kb on - strand, within yjfY at 535.672 kb on - strand, within yjfY at 535.672 kb on - strand, within yjfY at 535.674 kb on - strand, within yjfY at 535.674 kb on - strand, within yjfY at 535.683 kb on - strand, within yjfY at 535.718 kb on - strand, within yjfY at 535.749 kb on + strand, within yjfY at 535.749 kb on + strand, within yjfY at 535.750 kb on - strand, within yjfY at 535.750 kb on - strand, within yjfY at 535.752 kb on + strand, within yjfY at 535.752 kb on + strand, within yjfY at 535.752 kb on + strand, within yjfY at 535.753 kb on - strand, within yjfY at 535.753 kb on - strand, within yjfY at 535.753 kb on - strand, within yjfY at 535.753 kb on - strand, within yjfY at 535.753 kb on - strand, within yjfY at 535.759 kb on + strand, within yjfY at 535.785 kb on - strand, within yjfY at 535.793 kb on + strand, within yjfY at 535.793 kb on + strand, within yjfY at 535.793 kb on + strand, within yjfY at 535.793 kb on + strand, within yjfY at 535.794 kb on - strand, within yjfY at 535.794 kb on - strand, within yjfY at 535.811 kb on + strand at 535.815 kb on + strand at 535.815 kb on + strand at 535.816 kb on - strand at 535.816 kb on - strand at 535.831 kb on + strand at 535.831 kb on + strand at 535.831 kb on + strand at 535.831 kb on + strand at 535.831 kb on + strand at 535.832 kb on - strand at 535.832 kb on - strand at 535.832 kb on - strand at 535.832 kb on - strand at 535.832 kb on - strand at 535.833 kb on + strand at 535.853 kb on + strand at 535.853 kb on + strand at 535.854 kb on - strand at 535.854 kb on - strand at 535.854 kb on - strand at 535.854 kb on - strand at 535.907 kb on + strand at 535.907 kb on + strand at 535.908 kb on - strand at 535.917 kb on - strand at 535.917 kb on - strand at 535.953 kb on + strand at 535.954 kb on - strand at 535.954 kb on - strand at 535.987 kb on + strand at 535.987 kb on + strand at 535.987 kb on + strand at 535.988 kb on - strand at 535.988 kb on - strand at 536.002 kb on + strand at 536.003 kb on - strand at 536.041 kb on + strand, within ulaF at 536.146 kb on - strand, within ulaF at 536.164 kb on + strand, within ulaF at 536.164 kb on + strand, within ulaF at 536.164 kb on + strand, within ulaF at 536.164 kb on + strand, within ulaF at 536.165 kb on - strand, within ulaF
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 534,254 - -0.1 535,391 - -1.2 535,474 + +0.7 535,543 + -1.3 535,543 + +0.0 535,543 + -0.2 535,543 + -0.2 535,544 - -0.3 535,544 - +0.5 535,544 - +1.0 535,547 + +0.3 535,547 + +0.8 535,547 + -1.0 535,547 + +1.1 535,548 - -0.3 535,548 - +0.1 535,548 - -0.9 535,548 - -0.1 535,548 - +0.1 535,548 - +0.8 535,548 - -2.2 535,565 - -1.4 535,598 + yjfY MCAODC_02635 0.18 -1.4 535,598 + yjfY MCAODC_02635 0.18 +2.2 535,599 - yjfY MCAODC_02635 0.18 +1.0 535,599 - yjfY MCAODC_02635 0.18 +0.2 535,599 - yjfY MCAODC_02635 0.18 -0.0 535,599 - yjfY MCAODC_02635 0.18 +0.4 535,619 + yjfY MCAODC_02635 0.26 -1.4 535,620 - yjfY MCAODC_02635 0.26 +0.8 535,640 + yjfY MCAODC_02635 0.33 -0.0 535,641 - yjfY MCAODC_02635 0.34 -0.0 535,671 + yjfY MCAODC_02635 0.45 -1.6 535,672 - yjfY MCAODC_02635 0.45 +2.1 535,672 - yjfY MCAODC_02635 0.45 +0.6 535,672 - yjfY MCAODC_02635 0.45 -0.2 535,674 - yjfY MCAODC_02635 0.46 -0.3 535,674 - yjfY MCAODC_02635 0.46 -2.0 535,683 - yjfY MCAODC_02635 0.49 +1.1 535,718 - yjfY MCAODC_02635 0.62 +0.3 535,749 + yjfY MCAODC_02635 0.73 -0.8 535,749 + yjfY MCAODC_02635 0.73 +0.2 535,750 - yjfY MCAODC_02635 0.73 +1.6 535,750 - yjfY MCAODC_02635 0.73 -0.5 535,752 + yjfY MCAODC_02635 0.74 -0.1 535,752 + yjfY MCAODC_02635 0.74 +0.9 535,752 + yjfY MCAODC_02635 0.74 -0.4 535,753 - yjfY MCAODC_02635 0.74 -0.5 535,753 - yjfY MCAODC_02635 0.74 +1.4 535,753 - yjfY MCAODC_02635 0.74 +0.6 535,753 - yjfY MCAODC_02635 0.74 -0.8 535,753 - yjfY MCAODC_02635 0.74 +0.4 535,759 + yjfY MCAODC_02635 0.76 -1.2 535,785 - yjfY MCAODC_02635 0.86 +0.8 535,793 + yjfY MCAODC_02635 0.89 +0.2 535,793 + yjfY MCAODC_02635 0.89 -1.1 535,793 + yjfY MCAODC_02635 0.89 -0.5 535,793 + yjfY MCAODC_02635 0.89 -0.1 535,794 - yjfY MCAODC_02635 0.89 -0.0 535,794 - yjfY MCAODC_02635 0.89 -1.9 535,811 + +0.8 535,815 + -0.4 535,815 + +1.0 535,816 - -0.5 535,816 - -3.5 535,831 + +1.0 535,831 + -0.6 535,831 + -0.8 535,831 + -0.3 535,831 + -0.1 535,832 - +0.4 535,832 - +0.5 535,832 - -2.2 535,832 - -0.5 535,832 - -0.9 535,833 + +0.5 535,853 + -1.9 535,853 + -0.6 535,854 - +1.2 535,854 - +0.3 535,854 - +2.1 535,854 - +0.4 535,907 + +0.2 535,907 + -0.5 535,908 - +0.4 535,917 - +0.4 535,917 - -0.6 535,953 + +0.2 535,954 - +0.2 535,954 - +0.4 535,987 + +0.1 535,987 + -4.1 535,987 + -0.7 535,988 - +0.2 535,988 - -0.1 536,002 + -0.9 536,003 - +0.9 536,041 + ulaF MCAODC_02640 0.13 +1.0 536,146 - ulaF MCAODC_02640 0.28 +0.3 536,164 + ulaF MCAODC_02640 0.31 +0.2 536,164 + ulaF MCAODC_02640 0.31 +1.3 536,164 + ulaF MCAODC_02640 0.31 -0.5 536,164 + ulaF MCAODC_02640 0.31 -0.1 536,165 - ulaF MCAODC_02640 0.31 +0.7
Or see this region's nucleotide sequence