Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nrdD and nrdG are separated by 189 nucleotides nrdG and cybC are separated by 44 nucleotides cybC and pmbA are separated by 183 nucleotides
MCAODC_02410: nrdD - anaerobic ribonucleoside-triphosphate reductase, at 495,884 to 498,022
nrdD
MCAODC_02420: nrdG - anaerobic ribonucleoside-triphosphate reductase-activating protein, at 498,212 to 498,676
nrdG
MCAODC_02425: cybC - cytochrome b562, at 498,721 to 499,107
cybC
MCAODC_02430: pmbA - metalloprotease PmbA, at 499,291 to 500,643
pmbA
Position (kb) 498
499
500 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 497.762 kb on + strand, within nrdD at 497.762 kb on + strand, within nrdD at 497.763 kb on - strand, within nrdD at 497.768 kb on + strand, within nrdD at 497.778 kb on + strand, within nrdD at 497.778 kb on + strand, within nrdD at 497.778 kb on + strand, within nrdD at 497.779 kb on - strand, within nrdD at 497.779 kb on - strand, within nrdD at 497.783 kb on + strand, within nrdD at 497.784 kb on - strand, within nrdD at 497.784 kb on - strand, within nrdD at 497.797 kb on + strand, within nrdD at 497.798 kb on - strand, within nrdD at 497.798 kb on - strand, within nrdD at 497.798 kb on - strand, within nrdD at 497.798 kb on - strand, within nrdD at 497.816 kb on + strand at 497.817 kb on - strand at 497.817 kb on - strand at 497.907 kb on + strand at 497.907 kb on + strand at 497.931 kb on + strand at 497.931 kb on + strand at 497.931 kb on + strand at 497.931 kb on + strand at 497.931 kb on + strand at 497.932 kb on - strand at 497.932 kb on - strand at 497.932 kb on - strand at 497.932 kb on - strand at 497.932 kb on - strand at 497.956 kb on + strand at 497.981 kb on - strand at 497.981 kb on - strand at 498.015 kb on + strand at 498.016 kb on - strand at 498.016 kb on - strand at 498.030 kb on + strand at 498.030 kb on + strand at 498.030 kb on + strand at 498.128 kb on - strand at 498.183 kb on - strand at 498.211 kb on - strand at 498.211 kb on - strand at 498.211 kb on - strand at 498.218 kb on + strand at 498.218 kb on + strand at 498.219 kb on - strand at 498.219 kb on - strand at 498.227 kb on + strand at 498.227 kb on + strand at 498.227 kb on + strand at 498.227 kb on + strand at 498.227 kb on + strand at 498.228 kb on - strand at 498.228 kb on - strand at 498.228 kb on - strand at 498.228 kb on - strand at 498.228 kb on - strand at 498.230 kb on + strand at 498.230 kb on + strand at 498.231 kb on - strand at 498.231 kb on - strand at 498.311 kb on + strand, within nrdG at 498.311 kb on + strand, within nrdG at 498.311 kb on + strand, within nrdG at 498.311 kb on + strand, within nrdG at 498.312 kb on - strand, within nrdG at 498.312 kb on - strand, within nrdG at 498.312 kb on - strand, within nrdG at 498.312 kb on - strand, within nrdG at 498.312 kb on - strand, within nrdG at 498.313 kb on + strand, within nrdG at 498.313 kb on + strand, within nrdG at 498.352 kb on + strand, within nrdG at 498.353 kb on - strand, within nrdG at 498.356 kb on - strand, within nrdG at 498.401 kb on - strand, within nrdG at 498.416 kb on - strand, within nrdG at 498.477 kb on + strand, within nrdG at 498.530 kb on + strand, within nrdG at 498.677 kb on + strand at 498.677 kb on + strand at 498.677 kb on + strand at 498.677 kb on + strand at 498.677 kb on + strand at 498.678 kb on - strand at 498.678 kb on - strand at 498.678 kb on - strand at 498.722 kb on + strand at 498.722 kb on + strand at 498.729 kb on - strand at 498.729 kb on - strand at 498.729 kb on - strand at 498.790 kb on + strand, within cybC at 498.791 kb on - strand, within cybC at 498.796 kb on - strand, within cybC at 498.891 kb on + strand, within cybC at 498.892 kb on - strand, within cybC at 499.000 kb on + strand, within cybC at 499.064 kb on - strand, within cybC at 499.086 kb on + strand at 499.086 kb on + strand at 499.086 kb on + strand at 499.086 kb on + strand at 499.086 kb on + strand at 499.087 kb on - strand at 499.087 kb on - strand at 499.090 kb on + strand at 499.090 kb on + strand at 499.091 kb on - strand at 499.091 kb on - strand at 499.124 kb on + strand at 499.128 kb on + strand at 499.129 kb on - strand at 499.147 kb on + strand at 499.148 kb on - strand at 499.148 kb on - strand at 499.148 kb on - strand at 499.163 kb on - strand at 499.185 kb on + strand at 499.186 kb on - strand at 499.186 kb on - strand at 499.194 kb on + strand at 499.195 kb on - strand at 499.263 kb on + strand at 499.263 kb on + strand at 499.264 kb on - strand at 499.264 kb on - strand at 499.264 kb on - strand at 499.264 kb on - strand at 499.266 kb on - strand at 499.339 kb on + strand at 499.339 kb on + strand at 499.339 kb on + strand at 499.339 kb on + strand at 499.340 kb on - strand at 499.340 kb on - strand at 499.340 kb on - strand at 499.340 kb on - strand at 499.340 kb on - strand at 499.340 kb on - strand at 499.340 kb on - strand at 499.340 kb on - strand at 499.340 kb on - strand at 499.340 kb on - strand at 499.340 kb on - strand at 499.342 kb on - strand at 499.342 kb on - strand at 499.392 kb on + strand at 499.393 kb on - strand at 499.393 kb on - strand at 499.400 kb on - strand at 499.400 kb on - strand at 499.481 kb on + strand, within pmbA at 499.570 kb on + strand, within pmbA at 499.571 kb on - strand, within pmbA at 499.571 kb on - strand, within pmbA at 499.571 kb on - strand, within pmbA at 499.571 kb on - strand, within pmbA at 499.603 kb on - strand, within pmbA at 499.649 kb on + strand, within pmbA at 499.650 kb on - strand, within pmbA at 499.686 kb on + strand, within pmbA at 499.693 kb on - strand, within pmbA at 499.830 kb on + strand, within pmbA at 499.830 kb on + strand, within pmbA at 499.830 kb on + strand, within pmbA at 499.830 kb on + strand, within pmbA at 499.836 kb on - strand, within pmbA at 499.932 kb on + strand, within pmbA at 499.951 kb on + strand, within pmbA at 500.024 kb on + strand, within pmbA at 500.030 kb on + strand, within pmbA at 500.065 kb on + strand, within pmbA at 500.066 kb on - strand, within pmbA at 500.066 kb on - strand, within pmbA at 500.066 kb on - strand, within pmbA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 497,762 + nrdD MCAODC_02410 0.88 -0.4 497,762 + nrdD MCAODC_02410 0.88 +0.2 497,763 - nrdD MCAODC_02410 0.88 +1.7 497,768 + nrdD MCAODC_02410 0.88 +0.7 497,778 + nrdD MCAODC_02410 0.89 +1.7 497,778 + nrdD MCAODC_02410 0.89 +0.6 497,778 + nrdD MCAODC_02410 0.89 +0.2 497,779 - nrdD MCAODC_02410 0.89 -0.1 497,779 - nrdD MCAODC_02410 0.89 +1.1 497,783 + nrdD MCAODC_02410 0.89 +1.5 497,784 - nrdD MCAODC_02410 0.89 +0.3 497,784 - nrdD MCAODC_02410 0.89 +0.5 497,797 + nrdD MCAODC_02410 0.89 +0.8 497,798 - nrdD MCAODC_02410 0.89 -0.5 497,798 - nrdD MCAODC_02410 0.89 -2.0 497,798 - nrdD MCAODC_02410 0.89 -1.1 497,798 - nrdD MCAODC_02410 0.89 +0.0 497,816 + -3.1 497,817 - +0.0 497,817 - +0.4 497,907 + +0.4 497,907 + +0.2 497,931 + -1.5 497,931 + -0.1 497,931 + +1.2 497,931 + -2.2 497,931 + +3.2 497,932 - +0.5 497,932 - +1.2 497,932 - +1.0 497,932 - +0.7 497,932 - +0.8 497,956 + -0.8 497,981 - +0.7 497,981 - -0.6 498,015 + -0.3 498,016 - -0.7 498,016 - +1.4 498,030 + +0.0 498,030 + -1.1 498,030 + +0.8 498,128 - -1.7 498,183 - +0.2 498,211 - -0.3 498,211 - -0.5 498,211 - +1.4 498,218 + +0.1 498,218 + +0.9 498,219 - +1.0 498,219 - -0.9 498,227 + -0.5 498,227 + -0.5 498,227 + -0.8 498,227 + -0.1 498,227 + +0.0 498,228 - +3.5 498,228 - -1.5 498,228 - -0.5 498,228 - +0.2 498,228 - -1.8 498,230 + +1.0 498,230 + -2.5 498,231 - +1.0 498,231 - +0.6 498,311 + nrdG MCAODC_02420 0.21 -0.7 498,311 + nrdG MCAODC_02420 0.21 +0.5 498,311 + nrdG MCAODC_02420 0.21 -0.3 498,311 + nrdG MCAODC_02420 0.21 +0.5 498,312 - nrdG MCAODC_02420 0.22 -1.0 498,312 - nrdG MCAODC_02420 0.22 +0.1 498,312 - nrdG MCAODC_02420 0.22 -0.2 498,312 - nrdG MCAODC_02420 0.22 -1.8 498,312 - nrdG MCAODC_02420 0.22 -1.5 498,313 + nrdG MCAODC_02420 0.22 +0.1 498,313 + nrdG MCAODC_02420 0.22 -1.6 498,352 + nrdG MCAODC_02420 0.30 +0.2 498,353 - nrdG MCAODC_02420 0.30 +0.2 498,356 - nrdG MCAODC_02420 0.31 -0.4 498,401 - nrdG MCAODC_02420 0.41 +0.1 498,416 - nrdG MCAODC_02420 0.44 -0.6 498,477 + nrdG MCAODC_02420 0.57 -0.5 498,530 + nrdG MCAODC_02420 0.68 +0.7 498,677 + +0.7 498,677 + -0.8 498,677 + -0.6 498,677 + +0.6 498,677 + +0.3 498,678 - -0.2 498,678 - +1.5 498,678 - -0.0 498,722 + +0.4 498,722 + -0.4 498,729 - +2.2 498,729 - -1.3 498,729 - +0.6 498,790 + cybC MCAODC_02425 0.18 +0.2 498,791 - cybC MCAODC_02425 0.18 +2.5 498,796 - cybC MCAODC_02425 0.19 -0.5 498,891 + cybC MCAODC_02425 0.44 +0.4 498,892 - cybC MCAODC_02425 0.44 -0.2 499,000 + cybC MCAODC_02425 0.72 +0.1 499,064 - cybC MCAODC_02425 0.89 +0.5 499,086 + +0.3 499,086 + -0.5 499,086 + +0.0 499,086 + +0.8 499,086 + +0.4 499,087 - +0.8 499,087 - -1.4 499,090 + +0.2 499,090 + -0.1 499,091 - -1.7 499,091 - -0.5 499,124 + -0.6 499,128 + +0.7 499,129 - +0.3 499,147 + +0.9 499,148 - +0.2 499,148 - -0.7 499,148 - -0.9 499,163 - +0.0 499,185 + +0.5 499,186 - +0.5 499,186 - -1.2 499,194 + +0.3 499,195 - -0.0 499,263 + +0.1 499,263 + +0.8 499,264 - +0.7 499,264 - +0.1 499,264 - +0.3 499,264 - +1.6 499,266 - +0.4 499,339 + +0.1 499,339 + +0.7 499,339 + -0.1 499,339 + +0.2 499,340 - -0.4 499,340 - -0.1 499,340 - +0.3 499,340 - +0.6 499,340 - +0.6 499,340 - +1.3 499,340 - -1.9 499,340 - -0.2 499,340 - -0.5 499,340 - +0.0 499,340 - -1.1 499,342 - -2.4 499,342 - +1.0 499,392 + +0.4 499,393 - +0.7 499,393 - +0.7 499,400 - +0.2 499,400 - +0.1 499,481 + pmbA MCAODC_02430 0.14 +0.2 499,570 + pmbA MCAODC_02430 0.21 -2.2 499,571 - pmbA MCAODC_02430 0.21 +0.7 499,571 - pmbA MCAODC_02430 0.21 +0.2 499,571 - pmbA MCAODC_02430 0.21 -0.0 499,571 - pmbA MCAODC_02430 0.21 +1.2 499,603 - pmbA MCAODC_02430 0.23 +0.3 499,649 + pmbA MCAODC_02430 0.26 -1.7 499,650 - pmbA MCAODC_02430 0.27 +0.7 499,686 + pmbA MCAODC_02430 0.29 -1.5 499,693 - pmbA MCAODC_02430 0.30 +1.5 499,830 + pmbA MCAODC_02430 0.40 +1.0 499,830 + pmbA MCAODC_02430 0.40 -0.6 499,830 + pmbA MCAODC_02430 0.40 +1.2 499,830 + pmbA MCAODC_02430 0.40 -0.2 499,836 - pmbA MCAODC_02430 0.40 -0.2 499,932 + pmbA MCAODC_02430 0.47 +1.2 499,951 + pmbA MCAODC_02430 0.49 +0.8 500,024 + pmbA MCAODC_02430 0.54 -0.4 500,030 + pmbA MCAODC_02430 0.55 -0.2 500,065 + pmbA MCAODC_02430 0.57 +0.7 500,066 - pmbA MCAODC_02430 0.57 -0.1 500,066 - pmbA MCAODC_02430 0.57 -1.4 500,066 - pmbA MCAODC_02430 0.57 +0.1
Or see this region's nucleotide sequence