Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pyrB and pyrI are separated by 12 nucleotides pyrI and ridA are separated by 72 nucleotides ridA and mgtA are separated by 205 nucleotides
MCAODC_02370: pyrB - aspartate carbamoyltransferase, at 486,149 to 487,084
pyrB
MCAODC_02375: pyrI - aspartate carbamoyltransferase regulatory subunit, at 487,097 to 487,558
pyrI
MCAODC_02380: ridA - 2-iminobutanoate/2-iminopropanoate deaminase, at 487,631 to 488,017
ridA
MCAODC_02385: mgtA - magnesium-translocating P-type ATPase, at 488,223 to 490,919
mgtA
Position (kb) 487
488 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 486.176 kb on - strand at 486.176 kb on - strand at 486.386 kb on - strand, within pyrB at 486.443 kb on + strand, within pyrB at 486.443 kb on + strand, within pyrB at 486.444 kb on - strand, within pyrB at 486.444 kb on - strand, within pyrB at 486.576 kb on + strand, within pyrB at 486.576 kb on + strand, within pyrB at 486.576 kb on + strand, within pyrB at 486.576 kb on + strand, within pyrB at 486.577 kb on - strand, within pyrB at 486.577 kb on - strand, within pyrB at 486.645 kb on - strand, within pyrB at 486.705 kb on - strand, within pyrB at 486.741 kb on - strand, within pyrB at 486.793 kb on + strand, within pyrB at 486.793 kb on + strand, within pyrB at 486.827 kb on + strand, within pyrB at 486.827 kb on + strand, within pyrB at 486.827 kb on + strand, within pyrB at 486.827 kb on + strand, within pyrB at 486.828 kb on - strand, within pyrB at 486.931 kb on + strand, within pyrB at 486.939 kb on + strand, within pyrB at 486.939 kb on + strand, within pyrB at 486.940 kb on - strand, within pyrB at 486.940 kb on - strand, within pyrB at 486.985 kb on + strand, within pyrB at 487.004 kb on + strand at 487.004 kb on + strand at 487.082 kb on + strand at 487.083 kb on - strand at 487.092 kb on + strand at 487.092 kb on + strand at 487.093 kb on - strand at 487.093 kb on - strand at 487.108 kb on + strand at 487.112 kb on - strand at 487.129 kb on + strand at 487.146 kb on + strand, within pyrI at 487.177 kb on + strand, within pyrI at 487.177 kb on + strand, within pyrI at 487.178 kb on - strand, within pyrI at 487.285 kb on + strand, within pyrI at 487.308 kb on + strand, within pyrI at 487.309 kb on - strand, within pyrI at 487.325 kb on + strand, within pyrI at 487.325 kb on + strand, within pyrI at 487.326 kb on - strand, within pyrI at 487.326 kb on - strand, within pyrI at 487.361 kb on + strand, within pyrI at 487.361 kb on + strand, within pyrI at 487.361 kb on + strand, within pyrI at 487.361 kb on + strand, within pyrI at 487.361 kb on + strand, within pyrI at 487.361 kb on + strand, within pyrI at 487.361 kb on + strand, within pyrI at 487.362 kb on - strand, within pyrI at 487.362 kb on - strand, within pyrI at 487.375 kb on + strand, within pyrI at 487.375 kb on + strand, within pyrI at 487.438 kb on + strand, within pyrI at 487.439 kb on - strand, within pyrI at 487.515 kb on - strand at 487.538 kb on - strand at 487.557 kb on - strand at 487.557 kb on - strand at 487.589 kb on - strand at 487.590 kb on + strand at 487.615 kb on + strand at 487.615 kb on + strand at 487.615 kb on + strand at 487.616 kb on - strand at 487.618 kb on + strand at 487.669 kb on + strand at 487.670 kb on - strand, within ridA at 487.680 kb on - strand, within ridA at 487.683 kb on + strand, within ridA at 487.683 kb on + strand, within ridA at 487.684 kb on - strand, within ridA at 487.684 kb on - strand, within ridA at 487.684 kb on - strand, within ridA at 487.705 kb on + strand, within ridA at 487.705 kb on + strand, within ridA at 487.705 kb on + strand, within ridA at 487.847 kb on - strand, within ridA at 487.853 kb on - strand, within ridA at 487.853 kb on - strand, within ridA at 487.901 kb on + strand, within ridA at 487.901 kb on + strand, within ridA at 487.902 kb on - strand, within ridA at 488.037 kb on + strand at 488.052 kb on - strand at 488.150 kb on - strand at 488.176 kb on + strand at 488.217 kb on + strand at 488.217 kb on + strand at 488.247 kb on - strand at 488.248 kb on + strand at 488.249 kb on - strand at 488.249 kb on - strand at 488.249 kb on - strand at 488.249 kb on - strand at 488.249 kb on - strand at 488.279 kb on + strand at 488.279 kb on + strand at 488.279 kb on + strand at 488.279 kb on + strand at 488.280 kb on - strand at 488.281 kb on + strand at 488.281 kb on + strand at 488.282 kb on - strand at 488.282 kb on - strand at 488.282 kb on - strand at 488.282 kb on - strand at 488.314 kb on + strand at 488.314 kb on + strand at 488.314 kb on + strand at 488.314 kb on + strand at 488.315 kb on - strand at 488.315 kb on - strand at 488.315 kb on - strand at 488.315 kb on - strand at 488.344 kb on + strand at 488.463 kb on - strand at 488.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 486,176 - -1.6 486,176 - -0.4 486,386 - pyrB MCAODC_02370 0.25 -0.1 486,443 + pyrB MCAODC_02370 0.31 -1.2 486,443 + pyrB MCAODC_02370 0.31 +1.5 486,444 - pyrB MCAODC_02370 0.32 -0.4 486,444 - pyrB MCAODC_02370 0.32 +0.7 486,576 + pyrB MCAODC_02370 0.46 -0.3 486,576 + pyrB MCAODC_02370 0.46 +2.0 486,576 + pyrB MCAODC_02370 0.46 +0.1 486,576 + pyrB MCAODC_02370 0.46 +0.3 486,577 - pyrB MCAODC_02370 0.46 -0.1 486,577 - pyrB MCAODC_02370 0.46 -1.2 486,645 - pyrB MCAODC_02370 0.53 -1.8 486,705 - pyrB MCAODC_02370 0.59 -0.7 486,741 - pyrB MCAODC_02370 0.63 -1.6 486,793 + pyrB MCAODC_02370 0.69 -2.7 486,793 + pyrB MCAODC_02370 0.69 +0.5 486,827 + pyrB MCAODC_02370 0.72 +1.2 486,827 + pyrB MCAODC_02370 0.72 -0.1 486,827 + pyrB MCAODC_02370 0.72 -0.5 486,827 + pyrB MCAODC_02370 0.72 -0.1 486,828 - pyrB MCAODC_02370 0.73 +1.5 486,931 + pyrB MCAODC_02370 0.84 -0.4 486,939 + pyrB MCAODC_02370 0.84 -1.8 486,939 + pyrB MCAODC_02370 0.84 +0.6 486,940 - pyrB MCAODC_02370 0.85 +0.2 486,940 - pyrB MCAODC_02370 0.85 -0.6 486,985 + pyrB MCAODC_02370 0.89 -0.0 487,004 + +1.2 487,004 + +0.5 487,082 + +0.7 487,083 - -0.4 487,092 + -0.0 487,092 + +0.6 487,093 - -1.6 487,093 - +2.2 487,108 + +1.9 487,112 - +1.5 487,129 + -0.8 487,146 + pyrI MCAODC_02375 0.11 -0.1 487,177 + pyrI MCAODC_02375 0.17 -0.3 487,177 + pyrI MCAODC_02375 0.17 -2.0 487,178 - pyrI MCAODC_02375 0.18 -1.5 487,285 + pyrI MCAODC_02375 0.41 +1.1 487,308 + pyrI MCAODC_02375 0.46 +0.3 487,309 - pyrI MCAODC_02375 0.46 +0.5 487,325 + pyrI MCAODC_02375 0.49 -1.5 487,325 + pyrI MCAODC_02375 0.49 +0.7 487,326 - pyrI MCAODC_02375 0.50 +3.1 487,326 - pyrI MCAODC_02375 0.50 -0.8 487,361 + pyrI MCAODC_02375 0.57 -1.0 487,361 + pyrI MCAODC_02375 0.57 +0.4 487,361 + pyrI MCAODC_02375 0.57 +0.3 487,361 + pyrI MCAODC_02375 0.57 -0.0 487,361 + pyrI MCAODC_02375 0.57 -0.8 487,361 + pyrI MCAODC_02375 0.57 -0.6 487,361 + pyrI MCAODC_02375 0.57 +1.1 487,362 - pyrI MCAODC_02375 0.57 +0.3 487,362 - pyrI MCAODC_02375 0.57 +0.0 487,375 + pyrI MCAODC_02375 0.60 +0.9 487,375 + pyrI MCAODC_02375 0.60 -0.3 487,438 + pyrI MCAODC_02375 0.74 -0.6 487,439 - pyrI MCAODC_02375 0.74 -0.8 487,515 - -0.3 487,538 - +3.4 487,557 - +1.0 487,557 - +2.2 487,589 - -1.9 487,590 + +1.2 487,615 + +0.6 487,615 + -0.3 487,615 + -0.5 487,616 - -0.2 487,618 + +0.6 487,669 + -0.8 487,670 - ridA MCAODC_02380 0.10 +1.0 487,680 - ridA MCAODC_02380 0.13 -1.6 487,683 + ridA MCAODC_02380 0.13 +0.4 487,683 + ridA MCAODC_02380 0.13 +0.4 487,684 - ridA MCAODC_02380 0.14 -0.0 487,684 - ridA MCAODC_02380 0.14 +0.3 487,684 - ridA MCAODC_02380 0.14 -0.1 487,705 + ridA MCAODC_02380 0.19 +1.1 487,705 + ridA MCAODC_02380 0.19 +0.9 487,705 + ridA MCAODC_02380 0.19 -1.2 487,847 - ridA MCAODC_02380 0.56 +0.1 487,853 - ridA MCAODC_02380 0.57 -1.3 487,853 - ridA MCAODC_02380 0.57 -0.3 487,901 + ridA MCAODC_02380 0.70 +0.8 487,901 + ridA MCAODC_02380 0.70 -1.0 487,902 - ridA MCAODC_02380 0.70 +1.3 488,037 + +0.8 488,052 - -2.2 488,150 - +0.9 488,176 + +0.6 488,217 + -0.8 488,217 + +1.5 488,247 - -2.0 488,248 + +1.6 488,249 - +0.4 488,249 - +1.0 488,249 - -1.1 488,249 - -0.9 488,249 - -1.6 488,279 + +0.1 488,279 + -3.4 488,279 + -0.5 488,279 + +0.4 488,280 - +0.3 488,281 + -0.4 488,281 + -1.8 488,282 - -1.0 488,282 - -0.7 488,282 - -0.0 488,282 - +0.2 488,314 + +0.6 488,314 + -0.1 488,314 + -1.7 488,314 + +0.0 488,315 - -0.1 488,315 - +0.1 488,315 - -1.2 488,315 - -1.0 488,344 + -1.3 488,463 - -0.2 488,463 - -1.9
Or see this region's nucleotide sequence