Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt satP and mog are separated by 34 nucleotides mog and MCAODC_01595 are separated by 114 nucleotides MCAODC_01595 and yaaJ are separated by 278 nucleotides
MCAODC_01585: satP - acetate uptake transporter, at 306,679 to 307,245
satP
MCAODC_01590: mog - molybdopterin adenylyltransferase, at 307,280 to 307,867
mog
MCAODC_01595: MCAODC_01595 - transaldolase B, at 307,982 to 308,935
_01595
MCAODC_01600: yaaJ - Uncharacterized transporter YaaJ, at 309,214 to 310,644
yaaJ
Position (kb) 307
308
309 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 306.982 kb on + strand, within satP at 306.982 kb on + strand, within satP at 306.983 kb on - strand, within satP at 306.983 kb on - strand, within satP at 307.001 kb on + strand, within satP at 307.005 kb on + strand, within satP at 307.014 kb on + strand, within satP at 307.014 kb on + strand, within satP at 307.014 kb on + strand, within satP at 307.014 kb on + strand, within satP at 307.014 kb on + strand, within satP at 307.015 kb on - strand, within satP at 307.015 kb on - strand, within satP at 307.015 kb on - strand, within satP at 307.015 kb on - strand, within satP at 307.175 kb on - strand, within satP at 307.282 kb on - strand at 307.350 kb on + strand, within mog at 307.351 kb on - strand, within mog at 307.378 kb on - strand, within mog at 307.403 kb on + strand, within mog at 307.404 kb on - strand, within mog at 307.451 kb on - strand, within mog at 307.454 kb on - strand, within mog at 307.473 kb on - strand, within mog at 307.619 kb on + strand, within mog at 307.620 kb on - strand, within mog at 307.730 kb on + strand, within mog at 307.731 kb on - strand, within mog at 307.853 kb on - strand at 307.853 kb on - strand at 307.853 kb on - strand at 307.856 kb on + strand at 307.857 kb on - strand at 307.862 kb on - strand at 307.862 kb on - strand at 307.908 kb on + strand at 307.908 kb on + strand at 307.909 kb on - strand at 307.947 kb on + strand at 307.948 kb on - strand at 307.983 kb on + strand at 307.983 kb on + strand at 307.984 kb on - strand at 308.042 kb on - strand at 308.042 kb on - strand at 308.056 kb on + strand at 308.061 kb on - strand at 308.061 kb on - strand at 308.143 kb on - strand, within MCAODC_01595 at 308.152 kb on + strand, within MCAODC_01595 at 308.152 kb on + strand, within MCAODC_01595 at 308.152 kb on + strand, within MCAODC_01595 at 308.152 kb on + strand, within MCAODC_01595 at 308.153 kb on - strand, within MCAODC_01595 at 308.153 kb on - strand, within MCAODC_01595 at 308.298 kb on + strand, within MCAODC_01595 at 308.298 kb on + strand, within MCAODC_01595 at 308.298 kb on + strand, within MCAODC_01595 at 308.299 kb on - strand, within MCAODC_01595 at 308.299 kb on - strand, within MCAODC_01595 at 308.299 kb on - strand, within MCAODC_01595 at 308.302 kb on - strand, within MCAODC_01595 at 308.379 kb on + strand, within MCAODC_01595 at 308.379 kb on + strand, within MCAODC_01595 at 308.379 kb on + strand, within MCAODC_01595 at 308.380 kb on - strand, within MCAODC_01595 at 308.380 kb on - strand, within MCAODC_01595 at 308.476 kb on + strand, within MCAODC_01595 at 308.476 kb on + strand, within MCAODC_01595 at 308.477 kb on - strand, within MCAODC_01595 at 308.485 kb on + strand, within MCAODC_01595 at 308.485 kb on + strand, within MCAODC_01595 at 308.486 kb on - strand, within MCAODC_01595 at 308.486 kb on - strand, within MCAODC_01595 at 308.531 kb on - strand, within MCAODC_01595 at 308.552 kb on - strand, within MCAODC_01595 at 308.552 kb on - strand, within MCAODC_01595 at 308.566 kb on + strand, within MCAODC_01595 at 308.566 kb on + strand, within MCAODC_01595 at 308.566 kb on + strand, within MCAODC_01595 at 308.566 kb on + strand, within MCAODC_01595 at 308.567 kb on - strand, within MCAODC_01595 at 308.581 kb on - strand, within MCAODC_01595 at 308.581 kb on - strand, within MCAODC_01595 at 308.659 kb on + strand, within MCAODC_01595 at 308.696 kb on - strand, within MCAODC_01595 at 308.696 kb on - strand, within MCAODC_01595 at 308.699 kb on + strand, within MCAODC_01595 at 308.699 kb on + strand, within MCAODC_01595 at 308.700 kb on - strand, within MCAODC_01595 at 308.700 kb on - strand, within MCAODC_01595 at 308.700 kb on - strand, within MCAODC_01595 at 308.788 kb on + strand, within MCAODC_01595 at 308.788 kb on + strand, within MCAODC_01595 at 308.789 kb on - strand, within MCAODC_01595 at 308.857 kb on - strand at 308.857 kb on - strand at 308.905 kb on - strand at 308.905 kb on - strand at 308.938 kb on + strand at 308.938 kb on + strand at 308.942 kb on - strand at 308.942 kb on - strand at 308.973 kb on + strand at 308.974 kb on - strand at 309.108 kb on + strand at 309.108 kb on + strand at 309.108 kb on + strand at 309.108 kb on + strand at 309.108 kb on + strand at 309.108 kb on + strand at 309.108 kb on + strand at 309.108 kb on + strand at 309.108 kb on + strand at 309.108 kb on + strand at 309.108 kb on + strand at 309.108 kb on + strand at 309.108 kb on + strand at 309.108 kb on + strand at 309.108 kb on + strand at 309.108 kb on + strand at 309.108 kb on + strand at 309.108 kb on + strand at 309.109 kb on - strand at 309.109 kb on - strand at 309.109 kb on - strand at 309.109 kb on - strand at 309.109 kb on - strand at 309.109 kb on - strand at 309.113 kb on + strand at 309.125 kb on - strand at 309.125 kb on - strand at 309.131 kb on + strand at 309.132 kb on - strand at 309.132 kb on - strand at 309.143 kb on + strand at 309.143 kb on + strand at 309.143 kb on + strand at 309.143 kb on + strand at 309.143 kb on + strand at 309.143 kb on + strand at 309.143 kb on + strand at 309.143 kb on + strand at 309.143 kb on + strand at 309.144 kb on - strand at 309.144 kb on - strand at 309.144 kb on - strand at 309.144 kb on - strand at 309.144 kb on - strand at 309.144 kb on - strand at 309.144 kb on - strand at 309.144 kb on - strand at 309.144 kb on - strand at 309.145 kb on + strand at 309.147 kb on + strand at 309.147 kb on + strand at 309.147 kb on + strand at 309.148 kb on - strand at 309.200 kb on + strand at 309.210 kb on - strand at 309.234 kb on + strand at 309.237 kb on + strand at 309.238 kb on - strand at 309.268 kb on + strand at 309.268 kb on + strand at 309.268 kb on + strand at 309.269 kb on - strand at 309.269 kb on - strand at 309.269 kb on - strand at 309.328 kb on + strand at 309.360 kb on + strand, within yaaJ at 309.386 kb on + strand, within yaaJ at 309.408 kb on + strand, within yaaJ at 309.465 kb on + strand, within yaaJ at 309.559 kb on + strand, within yaaJ at 309.560 kb on - strand, within yaaJ at 309.560 kb on - strand, within yaaJ at 309.561 kb on + strand, within yaaJ at 309.562 kb on - strand, within yaaJ at 309.607 kb on + strand, within yaaJ at 309.607 kb on + strand, within yaaJ at 309.607 kb on + strand, within yaaJ at 309.607 kb on + strand, within yaaJ at 309.607 kb on + strand, within yaaJ at 309.608 kb on - strand, within yaaJ at 309.608 kb on - strand, within yaaJ at 309.608 kb on - strand, within yaaJ at 309.608 kb on - strand, within yaaJ at 309.608 kb on - strand, within yaaJ at 309.608 kb on - strand, within yaaJ at 309.608 kb on - strand, within yaaJ at 309.608 kb on - strand, within yaaJ at 309.609 kb on + strand, within yaaJ at 309.609 kb on + strand, within yaaJ at 309.610 kb on - strand, within yaaJ at 309.610 kb on - strand, within yaaJ at 309.610 kb on - strand, within yaaJ at 309.610 kb on - strand, within yaaJ at 309.680 kb on + strand, within yaaJ at 309.762 kb on + strand, within yaaJ at 309.851 kb on + strand, within yaaJ at 309.860 kb on + strand, within yaaJ at 309.888 kb on - strand, within yaaJ
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 306,982 + satP MCAODC_01585 0.53 -1.3 306,982 + satP MCAODC_01585 0.53 -1.3 306,983 - satP MCAODC_01585 0.54 +0.3 306,983 - satP MCAODC_01585 0.54 -0.3 307,001 + satP MCAODC_01585 0.57 +0.4 307,005 + satP MCAODC_01585 0.57 -0.6 307,014 + satP MCAODC_01585 0.59 +1.1 307,014 + satP MCAODC_01585 0.59 -0.1 307,014 + satP MCAODC_01585 0.59 -0.2 307,014 + satP MCAODC_01585 0.59 +0.5 307,014 + satP MCAODC_01585 0.59 -2.5 307,015 - satP MCAODC_01585 0.59 -1.8 307,015 - satP MCAODC_01585 0.59 +1.1 307,015 - satP MCAODC_01585 0.59 -1.0 307,015 - satP MCAODC_01585 0.59 +2.2 307,175 - satP MCAODC_01585 0.87 +1.2 307,282 - +0.7 307,350 + mog MCAODC_01590 0.12 +0.5 307,351 - mog MCAODC_01590 0.12 +1.4 307,378 - mog MCAODC_01590 0.17 -3.1 307,403 + mog MCAODC_01590 0.21 +1.3 307,404 - mog MCAODC_01590 0.21 -0.8 307,451 - mog MCAODC_01590 0.29 -0.2 307,454 - mog MCAODC_01590 0.30 +0.5 307,473 - mog MCAODC_01590 0.33 +0.2 307,619 + mog MCAODC_01590 0.58 +0.2 307,620 - mog MCAODC_01590 0.58 +0.6 307,730 + mog MCAODC_01590 0.77 -0.3 307,731 - mog MCAODC_01590 0.77 -0.4 307,853 - +0.6 307,853 - +0.3 307,853 - -0.6 307,856 + -0.3 307,857 - -0.5 307,862 - +0.2 307,862 - +0.4 307,908 + -0.5 307,908 + +0.1 307,909 - +1.0 307,947 + -3.0 307,948 - -0.3 307,983 + +0.6 307,983 + +0.1 307,984 - -2.2 308,042 - +0.5 308,042 - -0.1 308,056 + -0.4 308,061 - -0.4 308,061 - -0.2 308,143 - MCAODC_01595 0.17 +0.3 308,152 + MCAODC_01595 0.18 -1.4 308,152 + MCAODC_01595 0.18 +0.5 308,152 + MCAODC_01595 0.18 -0.3 308,152 + MCAODC_01595 0.18 +0.6 308,153 - MCAODC_01595 0.18 +0.3 308,153 - MCAODC_01595 0.18 +0.6 308,298 + MCAODC_01595 0.33 +0.5 308,298 + MCAODC_01595 0.33 -1.8 308,298 + MCAODC_01595 0.33 +0.5 308,299 - MCAODC_01595 0.33 -0.7 308,299 - MCAODC_01595 0.33 -0.6 308,299 - MCAODC_01595 0.33 +1.7 308,302 - MCAODC_01595 0.34 -1.4 308,379 + MCAODC_01595 0.42 -0.4 308,379 + MCAODC_01595 0.42 +0.3 308,379 + MCAODC_01595 0.42 -1.5 308,380 - MCAODC_01595 0.42 -1.8 308,380 - MCAODC_01595 0.42 +0.9 308,476 + MCAODC_01595 0.52 -0.1 308,476 + MCAODC_01595 0.52 +0.3 308,477 - MCAODC_01595 0.52 -0.5 308,485 + MCAODC_01595 0.53 +0.3 308,485 + MCAODC_01595 0.53 -0.8 308,486 - MCAODC_01595 0.53 -0.9 308,486 - MCAODC_01595 0.53 +0.9 308,531 - MCAODC_01595 0.58 -0.0 308,552 - MCAODC_01595 0.60 +0.3 308,552 - MCAODC_01595 0.60 +0.6 308,566 + MCAODC_01595 0.61 -2.2 308,566 + MCAODC_01595 0.61 +2.0 308,566 + MCAODC_01595 0.61 -0.1 308,566 + MCAODC_01595 0.61 +0.6 308,567 - MCAODC_01595 0.61 -0.4 308,581 - MCAODC_01595 0.63 -0.2 308,581 - MCAODC_01595 0.63 +0.2 308,659 + MCAODC_01595 0.71 +1.2 308,696 - MCAODC_01595 0.75 +2.0 308,696 - MCAODC_01595 0.75 -1.7 308,699 + MCAODC_01595 0.75 -0.3 308,699 + MCAODC_01595 0.75 +0.8 308,700 - MCAODC_01595 0.75 +0.4 308,700 - MCAODC_01595 0.75 +1.5 308,700 - MCAODC_01595 0.75 -0.8 308,788 + MCAODC_01595 0.84 -0.0 308,788 + MCAODC_01595 0.84 -1.6 308,789 - MCAODC_01595 0.85 -1.6 308,857 - -2.8 308,857 - +1.4 308,905 - +1.9 308,905 - -0.2 308,938 + +2.6 308,938 + +2.2 308,942 - -0.6 308,942 - +1.4 308,973 + -0.5 308,974 - +1.1 309,108 + -0.3 309,108 + +1.2 309,108 + +0.9 309,108 + +0.7 309,108 + +0.9 309,108 + +0.8 309,108 + -2.2 309,108 + +1.0 309,108 + +0.5 309,108 + +0.9 309,108 + +0.2 309,108 + -0.0 309,108 + +1.2 309,108 + +0.4 309,108 + -0.1 309,108 + +0.0 309,108 + +0.9 309,108 + +0.1 309,109 - -0.1 309,109 - -0.7 309,109 - +0.7 309,109 - +0.1 309,109 - -0.1 309,109 - -0.2 309,113 + -0.5 309,125 - -0.1 309,125 - -0.4 309,131 + -1.7 309,132 - -1.3 309,132 - -0.3 309,143 + -0.1 309,143 + -0.9 309,143 + -1.2 309,143 + +1.2 309,143 + -1.3 309,143 + -0.5 309,143 + -0.4 309,143 + -1.1 309,143 + +1.6 309,144 - +0.1 309,144 - +1.5 309,144 - -1.7 309,144 - -0.6 309,144 - -1.8 309,144 - -0.3 309,144 - -0.7 309,144 - -0.1 309,144 - +1.3 309,145 + +1.2 309,147 + +0.9 309,147 + +0.7 309,147 + +1.1 309,148 - +0.0 309,200 + -0.2 309,210 - +1.3 309,234 + +0.1 309,237 + -0.6 309,238 - +3.2 309,268 + -0.8 309,268 + -0.1 309,268 + -1.1 309,269 - -1.5 309,269 - -1.8 309,269 - -0.7 309,328 + +2.6 309,360 + yaaJ MCAODC_01600 0.10 -0.8 309,386 + yaaJ MCAODC_01600 0.12 -0.4 309,408 + yaaJ MCAODC_01600 0.14 +0.7 309,465 + yaaJ MCAODC_01600 0.18 -0.3 309,559 + yaaJ MCAODC_01600 0.24 +0.8 309,560 - yaaJ MCAODC_01600 0.24 -0.4 309,560 - yaaJ MCAODC_01600 0.24 -0.1 309,561 + yaaJ MCAODC_01600 0.24 -0.6 309,562 - yaaJ MCAODC_01600 0.24 +0.7 309,607 + yaaJ MCAODC_01600 0.27 +0.3 309,607 + yaaJ MCAODC_01600 0.27 +1.4 309,607 + yaaJ MCAODC_01600 0.27 -1.3 309,607 + yaaJ MCAODC_01600 0.27 +0.3 309,607 + yaaJ MCAODC_01600 0.27 -0.4 309,608 - yaaJ MCAODC_01600 0.28 +0.6 309,608 - yaaJ MCAODC_01600 0.28 +0.5 309,608 - yaaJ MCAODC_01600 0.28 +0.5 309,608 - yaaJ MCAODC_01600 0.28 -1.8 309,608 - yaaJ MCAODC_01600 0.28 -0.7 309,608 - yaaJ MCAODC_01600 0.28 -1.4 309,608 - yaaJ MCAODC_01600 0.28 -0.2 309,608 - yaaJ MCAODC_01600 0.28 -2.3 309,609 + yaaJ MCAODC_01600 0.28 +0.6 309,609 + yaaJ MCAODC_01600 0.28 -0.5 309,610 - yaaJ MCAODC_01600 0.28 +1.9 309,610 - yaaJ MCAODC_01600 0.28 +0.1 309,610 - yaaJ MCAODC_01600 0.28 +1.0 309,610 - yaaJ MCAODC_01600 0.28 -2.8 309,680 + yaaJ MCAODC_01600 0.33 +0.1 309,762 + yaaJ MCAODC_01600 0.38 +0.1 309,851 + yaaJ MCAODC_01600 0.45 +0.1 309,860 + yaaJ MCAODC_01600 0.45 -1.2 309,888 - yaaJ MCAODC_01600 0.47 +0.2
Or see this region's nucleotide sequence