Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06788 and MPMX19_06789 are separated by 40 nucleotides MPMX19_06789 and MPMX19_06790 are separated by 53 nucleotides
MPMX19_06788: MPMX19_06788 - putative protein YiaX1, at 53,322 to 54,305
_06788
MPMX19_06789: MPMX19_06789 - Octopine catabolism/uptake operon regulatory protein OccR, at 54,346 to 55,242
_06789
MPMX19_06790: MPMX19_06790 - D-amino acid dehydrogenase, at 55,296 to 56,621
_06790
Position (kb) 54
55
56 Strain fitness (log2 ratio) -2
-1
0
1 at 54.066 kb on + strand, within MPMX19_06788 at 54.067 kb on - strand, within MPMX19_06788 at 54.177 kb on + strand, within MPMX19_06788 at 54.177 kb on + strand, within MPMX19_06788 at 54.177 kb on + strand, within MPMX19_06788 at 54.177 kb on + strand, within MPMX19_06788 at 54.177 kb on + strand, within MPMX19_06788 at 54.178 kb on - strand, within MPMX19_06788 at 54.280 kb on + strand at 54.310 kb on + strand at 54.311 kb on - strand at 54.311 kb on - strand at 54.311 kb on - strand at 54.312 kb on + strand at 54.312 kb on + strand at 54.312 kb on + strand at 54.313 kb on - strand at 54.313 kb on - strand at 54.988 kb on + strand, within MPMX19_06789 at 54.988 kb on + strand, within MPMX19_06789 at 54.988 kb on + strand, within MPMX19_06789 at 54.989 kb on - strand, within MPMX19_06789 at 54.989 kb on - strand, within MPMX19_06789 at 55.519 kb on + strand, within MPMX19_06790 at 55.520 kb on - strand, within MPMX19_06790 at 55.520 kb on - strand, within MPMX19_06790 at 55.520 kb on - strand, within MPMX19_06790
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 54,066 + MPMX19_06788 0.76 -0.5 54,067 - MPMX19_06788 0.76 -0.5 54,177 + MPMX19_06788 0.87 -0.7 54,177 + MPMX19_06788 0.87 -0.1 54,177 + MPMX19_06788 0.87 -0.9 54,177 + MPMX19_06788 0.87 +0.4 54,177 + MPMX19_06788 0.87 -1.5 54,178 - MPMX19_06788 0.87 +0.6 54,280 + -1.2 54,310 + +0.4 54,311 - -0.5 54,311 - -1.7 54,311 - +0.9 54,312 + -1.7 54,312 + +0.7 54,312 + -0.3 54,313 - -0.4 54,313 - -0.1 54,988 + MPMX19_06789 0.72 -1.9 54,988 + MPMX19_06789 0.72 -0.1 54,988 + MPMX19_06789 0.72 -1.2 54,989 - MPMX19_06789 0.72 -1.0 54,989 - MPMX19_06789 0.72 -1.2 55,519 + MPMX19_06790 0.17 +0.5 55,520 - MPMX19_06790 0.17 -0.9 55,520 - MPMX19_06790 0.17 -0.4 55,520 - MPMX19_06790 0.17 +0.3
Or see this region's nucleotide sequence