Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06481

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06480 and MPMX19_06481 are separated by 20 nucleotidesMPMX19_06481 and MPMX19_06482 are separated by 15 nucleotidesMPMX19_06482 and MPMX19_06483 are separated by 12 nucleotides MPMX19_06480: MPMX19_06480 - hypothetical protein, at 263,539 to 264,573 _06480 MPMX19_06481: MPMX19_06481 - Thiosulfate sulfurtransferase GlpE, at 264,594 to 266,210 _06481 MPMX19_06482: MPMX19_06482 - 3-mercaptopropionate dioxygenase, at 266,226 to 266,864 _06482 MPMX19_06483: MPMX19_06483 - Aliphatic sulfonates import ATP-binding protein SsuB, at 266,877 to 267,671 _06483 Position (kb) 264 265 266 267Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 263.667 kb on - strand, within MPMX19_06480at 263.667 kb on - strand, within MPMX19_06480at 263.738 kb on + strand, within MPMX19_06480at 263.738 kb on + strand, within MPMX19_06480at 263.739 kb on - strand, within MPMX19_06480at 263.739 kb on - strand, within MPMX19_06480at 263.739 kb on - strand, within MPMX19_06480at 263.739 kb on - strand, within MPMX19_06480at 263.891 kb on + strand, within MPMX19_06480at 263.891 kb on + strand, within MPMX19_06480at 263.891 kb on + strand, within MPMX19_06480at 263.891 kb on + strand, within MPMX19_06480at 263.891 kb on + strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 263.892 kb on - strand, within MPMX19_06480at 264.102 kb on - strand, within MPMX19_06480at 264.102 kb on - strand, within MPMX19_06480at 264.102 kb on - strand, within MPMX19_06480at 264.188 kb on + strand, within MPMX19_06480at 264.188 kb on + strand, within MPMX19_06480at 264.189 kb on - strand, within MPMX19_06480at 264.189 kb on - strand, within MPMX19_06480at 264.347 kb on + strand, within MPMX19_06480at 264.347 kb on + strand, within MPMX19_06480at 264.347 kb on + strand, within MPMX19_06480at 264.347 kb on + strand, within MPMX19_06480at 264.347 kb on + strand, within MPMX19_06480at 264.419 kb on + strand, within MPMX19_06480at 264.419 kb on + strand, within MPMX19_06480at 264.419 kb on + strand, within MPMX19_06480at 264.419 kb on + strand, within MPMX19_06480at 264.419 kb on + strand, within MPMX19_06480at 264.420 kb on - strand, within MPMX19_06480at 264.420 kb on - strand, within MPMX19_06480at 264.432 kb on - strand, within MPMX19_06480at 264.665 kb on - strandat 264.665 kb on - strandat 264.665 kb on - strandat 264.665 kb on - strandat 264.665 kb on - strandat 264.715 kb on + strandat 264.715 kb on + strandat 264.715 kb on + strandat 264.845 kb on - strand, within MPMX19_06481at 264.940 kb on + strand, within MPMX19_06481at 264.940 kb on + strand, within MPMX19_06481at 264.940 kb on + strand, within MPMX19_06481at 264.940 kb on + strand, within MPMX19_06481at 264.940 kb on + strand, within MPMX19_06481at 264.940 kb on + strand, within MPMX19_06481at 265.247 kb on - strand, within MPMX19_06481at 265.247 kb on - strand, within MPMX19_06481at 265.247 kb on - strand, within MPMX19_06481at 265.315 kb on + strand, within MPMX19_06481at 265.315 kb on + strand, within MPMX19_06481at 265.315 kb on + strand, within MPMX19_06481at 265.723 kb on + strand, within MPMX19_06481at 265.723 kb on + strand, within MPMX19_06481at 265.723 kb on + strand, within MPMX19_06481at 265.724 kb on - strand, within MPMX19_06481at 265.724 kb on - strand, within MPMX19_06481at 265.933 kb on + strand, within MPMX19_06481at 265.933 kb on + strand, within MPMX19_06481at 265.973 kb on - strand, within MPMX19_06481at 265.973 kb on - strand, within MPMX19_06481at 265.973 kb on - strand, within MPMX19_06481at 265.991 kb on - strand, within MPMX19_06481at 265.991 kb on - strand, within MPMX19_06481at 265.991 kb on - strand, within MPMX19_06481at 265.991 kb on - strand, within MPMX19_06481at 265.991 kb on - strand, within MPMX19_06481at 266.029 kb on + strand, within MPMX19_06481at 266.029 kb on + strand, within MPMX19_06481at 266.092 kb on + strandat 266.092 kb on + strandat 266.092 kb on + strandat 266.092 kb on + strandat 266.093 kb on - strandat 266.093 kb on - strandat 266.357 kb on + strand, within MPMX19_06482at 266.365 kb on + strand, within MPMX19_06482at 266.365 kb on + strand, within MPMX19_06482at 266.365 kb on + strand, within MPMX19_06482at 266.365 kb on + strand, within MPMX19_06482at 266.365 kb on + strand, within MPMX19_06482at 266.366 kb on - strand, within MPMX19_06482at 266.366 kb on - strand, within MPMX19_06482at 266.366 kb on - strand, within MPMX19_06482at 266.366 kb on - strand, within MPMX19_06482at 266.515 kb on + strand, within MPMX19_06482at 266.515 kb on + strand, within MPMX19_06482at 266.516 kb on - strand, within MPMX19_06482at 266.633 kb on - strand, within MPMX19_06482at 266.686 kb on + strand, within MPMX19_06482at 266.686 kb on + strand, within MPMX19_06482at 266.686 kb on + strand, within MPMX19_06482at 266.977 kb on - strand, within MPMX19_06483at 266.977 kb on - strand, within MPMX19_06483at 266.977 kb on - strand, within MPMX19_06483at 266.977 kb on - strand, within MPMX19_06483at 266.977 kb on - strand, within MPMX19_06483at 266.977 kb on - strand, within MPMX19_06483at 266.977 kb on - strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483at 267.138 kb on + strand, within MPMX19_06483

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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263,667 - MPMX19_06480 0.12 -0.2
263,667 - MPMX19_06480 0.12 +0.6
263,738 + MPMX19_06480 0.19 -1.2
263,738 + MPMX19_06480 0.19 -2.6
263,739 - MPMX19_06480 0.19 -1.1
263,739 - MPMX19_06480 0.19 -0.9
263,739 - MPMX19_06480 0.19 -0.2
263,739 - MPMX19_06480 0.19 -0.5
263,891 + MPMX19_06480 0.34 -1.8
263,891 + MPMX19_06480 0.34 +0.1
263,891 + MPMX19_06480 0.34 -0.7
263,891 + MPMX19_06480 0.34 -0.1
263,891 + MPMX19_06480 0.34 -0.9
263,892 - MPMX19_06480 0.34 -0.5
263,892 - MPMX19_06480 0.34 -1.9
263,892 - MPMX19_06480 0.34 -0.5
263,892 - MPMX19_06480 0.34 -0.5
263,892 - MPMX19_06480 0.34 -1.5
263,892 - MPMX19_06480 0.34 -0.7
263,892 - MPMX19_06480 0.34 -0.4
264,102 - MPMX19_06480 0.54 -0.5
264,102 - MPMX19_06480 0.54 -0.9
264,102 - MPMX19_06480 0.54 +0.7
264,188 + MPMX19_06480 0.63 +2.0
264,188 + MPMX19_06480 0.63 +0.6
264,189 - MPMX19_06480 0.63 +1.1
264,189 - MPMX19_06480 0.63 -0.5
264,347 + MPMX19_06480 0.78 +1.1
264,347 + MPMX19_06480 0.78 +0.5
264,347 + MPMX19_06480 0.78 -1.1
264,347 + MPMX19_06480 0.78 -0.3
264,347 + MPMX19_06480 0.78 -0.0
264,419 + MPMX19_06480 0.85 -1.5
264,419 + MPMX19_06480 0.85 +0.5
264,419 + MPMX19_06480 0.85 -1.0
264,419 + MPMX19_06480 0.85 +0.7
264,419 + MPMX19_06480 0.85 +0.0
264,420 - MPMX19_06480 0.85 -1.2
264,420 - MPMX19_06480 0.85 +0.1
264,432 - MPMX19_06480 0.86 +0.0
264,665 - +0.5
264,665 - +1.1
264,665 - -1.7
264,665 - +0.5
264,665 - +0.5
264,715 + +0.3
264,715 + -0.2
264,715 + -0.2
264,845 - MPMX19_06481 0.16 -1.2
264,940 + MPMX19_06481 0.21 +0.8
264,940 + MPMX19_06481 0.21 -0.9
264,940 + MPMX19_06481 0.21 +0.3
264,940 + MPMX19_06481 0.21 -0.9
264,940 + MPMX19_06481 0.21 +0.3
264,940 + MPMX19_06481 0.21 -0.5
265,247 - MPMX19_06481 0.40 +1.1
265,247 - MPMX19_06481 0.40 +0.9
265,247 - MPMX19_06481 0.40 +0.4
265,315 + MPMX19_06481 0.45 +0.7
265,315 + MPMX19_06481 0.45 -1.2
265,315 + MPMX19_06481 0.45 -0.3
265,723 + MPMX19_06481 0.70 -2.8
265,723 + MPMX19_06481 0.70 -0.2
265,723 + MPMX19_06481 0.70 +0.1
265,724 - MPMX19_06481 0.70 -1.2
265,724 - MPMX19_06481 0.70 +1.5
265,933 + MPMX19_06481 0.83 -0.6
265,933 + MPMX19_06481 0.83 -0.5
265,973 - MPMX19_06481 0.85 +0.7
265,973 - MPMX19_06481 0.85 +1.1
265,973 - MPMX19_06481 0.85 -0.8
265,991 - MPMX19_06481 0.86 +1.1
265,991 - MPMX19_06481 0.86 -1.2
265,991 - MPMX19_06481 0.86 -1.7
265,991 - MPMX19_06481 0.86 +0.5
265,991 - MPMX19_06481 0.86 -0.0
266,029 + MPMX19_06481 0.89 +0.0
266,029 + MPMX19_06481 0.89 -1.2
266,092 + -0.9
266,092 + -3.0
266,092 + +0.7
266,092 + +0.3
266,093 - -0.5
266,093 - +0.1
266,357 + MPMX19_06482 0.21 -1.3
266,365 + MPMX19_06482 0.22 -0.9
266,365 + MPMX19_06482 0.22 -0.2
266,365 + MPMX19_06482 0.22 +0.3
266,365 + MPMX19_06482 0.22 -1.0
266,365 + MPMX19_06482 0.22 -0.3
266,366 - MPMX19_06482 0.22 +1.7
266,366 - MPMX19_06482 0.22 -1.9
266,366 - MPMX19_06482 0.22 -0.3
266,366 - MPMX19_06482 0.22 -1.3
266,515 + MPMX19_06482 0.45 +0.5
266,515 + MPMX19_06482 0.45 +0.3
266,516 - MPMX19_06482 0.45 +1.5
266,633 - MPMX19_06482 0.64 -1.7
266,686 + MPMX19_06482 0.72 -1.1
266,686 + MPMX19_06482 0.72 +0.8
266,686 + MPMX19_06482 0.72 -2.7
266,977 - MPMX19_06483 0.13 -0.4
266,977 - MPMX19_06483 0.13 -0.1
266,977 - MPMX19_06483 0.13 +0.0
266,977 - MPMX19_06483 0.13 -0.2
266,977 - MPMX19_06483 0.13 +2.7
266,977 - MPMX19_06483 0.13 +0.1
266,977 - MPMX19_06483 0.13 -1.7
267,138 + MPMX19_06483 0.33 +0.1
267,138 + MPMX19_06483 0.33 -1.7
267,138 + MPMX19_06483 0.33 -0.2
267,138 + MPMX19_06483 0.33 -0.9
267,138 + MPMX19_06483 0.33 +0.1
267,138 + MPMX19_06483 0.33 +1.5
267,138 + MPMX19_06483 0.33 +0.4
267,138 + MPMX19_06483 0.33 -0.1
267,138 + MPMX19_06483 0.33 +0.4
267,138 + MPMX19_06483 0.33 -0.2
267,138 + MPMX19_06483 0.33 -0.4
267,138 + MPMX19_06483 0.33 -0.9
267,138 + MPMX19_06483 0.33 +0.7

Or see this region's nucleotide sequence