Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06015

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06014 and MPMX19_06015 are separated by 204 nucleotidesMPMX19_06015 and MPMX19_06016 are separated by 0 nucleotidesMPMX19_06016 and MPMX19_06017 are separated by 140 nucleotides MPMX19_06014: MPMX19_06014 - Histidinol-phosphate aminotransferase, at 167,174 to 168,580 _06014 MPMX19_06015: MPMX19_06015 - Aerobic respiration control protein ArcA, at 168,785 to 169,480 _06015 MPMX19_06016: MPMX19_06016 - putative N-octanoylanthranilate hydrolase AqdA1, at 169,481 to 170,311 _06016 MPMX19_06017: MPMX19_06017 - hypothetical protein, at 170,452 to 171,081 _06017 Position (kb) 168 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 167.786 kb on + strand, within MPMX19_06014at 167.786 kb on + strand, within MPMX19_06014at 167.786 kb on + strand, within MPMX19_06014at 167.787 kb on - strand, within MPMX19_06014at 167.853 kb on + strand, within MPMX19_06014at 167.853 kb on + strand, within MPMX19_06014at 167.853 kb on + strand, within MPMX19_06014at 167.853 kb on + strand, within MPMX19_06014at 167.853 kb on + strand, within MPMX19_06014at 167.854 kb on - strand, within MPMX19_06014at 167.854 kb on - strand, within MPMX19_06014at 167.943 kb on + strand, within MPMX19_06014at 167.943 kb on + strand, within MPMX19_06014at 167.943 kb on + strand, within MPMX19_06014at 167.943 kb on + strand, within MPMX19_06014at 167.943 kb on + strand, within MPMX19_06014at 167.944 kb on - strand, within MPMX19_06014at 167.944 kb on - strand, within MPMX19_06014at 167.944 kb on - strand, within MPMX19_06014at 168.404 kb on - strand, within MPMX19_06014at 168.405 kb on + strand, within MPMX19_06014at 168.405 kb on + strand, within MPMX19_06014at 168.405 kb on + strand, within MPMX19_06014at 168.406 kb on - strand, within MPMX19_06014at 168.534 kb on + strandat 168.535 kb on - strandat 168.691 kb on - strandat 168.724 kb on + strandat 168.724 kb on + strandat 168.725 kb on - strandat 168.725 kb on - strandat 168.725 kb on - strandat 168.725 kb on - strandat 168.725 kb on - strandat 168.725 kb on - strandat 168.843 kb on - strandat 168.843 kb on - strandat 168.843 kb on - strandat 169.076 kb on + strand, within MPMX19_06015at 169.076 kb on + strand, within MPMX19_06015at 169.076 kb on + strand, within MPMX19_06015at 169.076 kb on + strand, within MPMX19_06015at 169.077 kb on - strand, within MPMX19_06015at 169.077 kb on - strand, within MPMX19_06015at 169.077 kb on - strand, within MPMX19_06015at 169.077 kb on - strand, within MPMX19_06015at 169.077 kb on - strand, within MPMX19_06015at 169.077 kb on - strand, within MPMX19_06015at 169.077 kb on - strand, within MPMX19_06015at 169.077 kb on - strand, within MPMX19_06015at 169.077 kb on - strand, within MPMX19_06015at 169.077 kb on - strand, within MPMX19_06015at 169.077 kb on - strand, within MPMX19_06015at 169.077 kb on - strand, within MPMX19_06015at 169.077 kb on - strand, within MPMX19_06015at 169.356 kb on - strand, within MPMX19_06015at 169.454 kb on + strandat 169.454 kb on + strandat 169.454 kb on + strandat 169.454 kb on + strandat 169.454 kb on + strandat 169.454 kb on + strandat 169.454 kb on + strandat 169.454 kb on + strandat 169.454 kb on + strandat 169.454 kb on + strandat 169.454 kb on + strandat 169.454 kb on + strandat 169.454 kb on + strandat 169.454 kb on + strandat 169.454 kb on + strandat 169.454 kb on + strandat 169.454 kb on + strandat 169.454 kb on + strandat 169.454 kb on + strandat 169.455 kb on - strandat 169.455 kb on - strandat 169.455 kb on - strandat 169.455 kb on - strandat 169.455 kb on - strandat 169.455 kb on - strandat 169.455 kb on - strandat 169.455 kb on - strandat 169.455 kb on - strandat 169.455 kb on - strandat 169.455 kb on - strandat 169.455 kb on - strandat 169.455 kb on - strandat 169.455 kb on - strandat 169.455 kb on - strandat 169.455 kb on - strandat 169.455 kb on - strandat 169.599 kb on + strand, within MPMX19_06016at 169.599 kb on + strand, within MPMX19_06016at 169.599 kb on + strand, within MPMX19_06016at 169.599 kb on + strand, within MPMX19_06016at 169.599 kb on + strand, within MPMX19_06016at 169.599 kb on + strand, within MPMX19_06016at 169.599 kb on + strand, within MPMX19_06016at 169.599 kb on + strand, within MPMX19_06016at 169.599 kb on + strand, within MPMX19_06016at 169.812 kb on + strand, within MPMX19_06016at 169.813 kb on - strand, within MPMX19_06016at 169.813 kb on - strand, within MPMX19_06016at 169.813 kb on - strand, within MPMX19_06016at 169.813 kb on - strand, within MPMX19_06016at 169.911 kb on + strand, within MPMX19_06016at 169.911 kb on + strand, within MPMX19_06016at 169.911 kb on + strand, within MPMX19_06016at 169.911 kb on + strand, within MPMX19_06016at 169.911 kb on + strand, within MPMX19_06016at 169.911 kb on + strand, within MPMX19_06016at 169.911 kb on + strand, within MPMX19_06016at 169.911 kb on + strand, within MPMX19_06016at 169.911 kb on + strand, within MPMX19_06016at 169.911 kb on + strand, within MPMX19_06016at 169.912 kb on - strand, within MPMX19_06016at 169.912 kb on - strand, within MPMX19_06016at 169.912 kb on - strand, within MPMX19_06016at 169.912 kb on - strand, within MPMX19_06016at 169.912 kb on - strand, within MPMX19_06016at 169.912 kb on - strand, within MPMX19_06016at 169.912 kb on - strand, within MPMX19_06016at 169.912 kb on - strand, within MPMX19_06016at 170.040 kb on + strand, within MPMX19_06016at 170.040 kb on + strand, within MPMX19_06016at 170.041 kb on - strand, within MPMX19_06016at 170.049 kb on + strand, within MPMX19_06016at 170.070 kb on + strand, within MPMX19_06016at 170.070 kb on + strand, within MPMX19_06016at 170.071 kb on - strand, within MPMX19_06016at 170.071 kb on - strand, within MPMX19_06016at 170.071 kb on - strand, within MPMX19_06016at 170.106 kb on + strand, within MPMX19_06016at 170.106 kb on + strand, within MPMX19_06016at 170.106 kb on + strand, within MPMX19_06016at 170.106 kb on + strand, within MPMX19_06016at 170.106 kb on + strand, within MPMX19_06016at 170.106 kb on + strand, within MPMX19_06016at 170.106 kb on + strand, within MPMX19_06016at 170.106 kb on + strand, within MPMX19_06016at 170.106 kb on + strand, within MPMX19_06016at 170.106 kb on + strand, within MPMX19_06016at 170.106 kb on + strand, within MPMX19_06016at 170.107 kb on - strand, within MPMX19_06016at 170.107 kb on - strand, within MPMX19_06016at 170.107 kb on - strand, within MPMX19_06016at 170.107 kb on - strand, within MPMX19_06016at 170.107 kb on - strand, within MPMX19_06016at 170.142 kb on + strand, within MPMX19_06016at 170.142 kb on + strand, within MPMX19_06016at 170.142 kb on + strand, within MPMX19_06016at 170.142 kb on + strand, within MPMX19_06016at 170.142 kb on + strand, within MPMX19_06016at 170.142 kb on + strand, within MPMX19_06016at 170.142 kb on + strand, within MPMX19_06016at 170.142 kb on + strand, within MPMX19_06016at 170.142 kb on + strand, within MPMX19_06016at 170.143 kb on - strand, within MPMX19_06016at 170.143 kb on - strand, within MPMX19_06016at 170.190 kb on + strand, within MPMX19_06016at 170.190 kb on + strand, within MPMX19_06016at 170.248 kb on - strandat 170.248 kb on - strandat 170.248 kb on - strandat 170.389 kb on + strandat 170.389 kb on + strandat 170.389 kb on + strandat 170.389 kb on + strandat 170.389 kb on + strandat 170.390 kb on - strandat 170.390 kb on - strandat 170.390 kb on - strandat 170.390 kb on - strandat 170.390 kb on - strandat 170.390 kb on - strandat 170.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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167,786 + MPMX19_06014 0.43 -0.7
167,786 + MPMX19_06014 0.43 +0.0
167,786 + MPMX19_06014 0.43 -1.1
167,787 - MPMX19_06014 0.44 -0.5
167,853 + MPMX19_06014 0.48 -2.1
167,853 + MPMX19_06014 0.48 +1.3
167,853 + MPMX19_06014 0.48 +2.3
167,853 + MPMX19_06014 0.48 +0.9
167,853 + MPMX19_06014 0.48 +0.0
167,854 - MPMX19_06014 0.48 +0.5
167,854 - MPMX19_06014 0.48 +0.9
167,943 + MPMX19_06014 0.55 +0.7
167,943 + MPMX19_06014 0.55 -0.1
167,943 + MPMX19_06014 0.55 +0.4
167,943 + MPMX19_06014 0.55 -1.1
167,943 + MPMX19_06014 0.55 -0.1
167,944 - MPMX19_06014 0.55 -2.1
167,944 - MPMX19_06014 0.55 +1.6
167,944 - MPMX19_06014 0.55 -0.4
168,404 - MPMX19_06014 0.87 -1.0
168,405 + MPMX19_06014 0.87 -1.1
168,405 + MPMX19_06014 0.87 -0.7
168,405 + MPMX19_06014 0.87 +0.3
168,406 - MPMX19_06014 0.88 +0.6
168,534 + +1.7
168,535 - +2.9
168,691 - +0.7
168,724 + -0.5
168,724 + -0.3
168,725 - +1.2
168,725 - +0.3
168,725 - -1.0
168,725 - +0.4
168,725 - -2.3
168,725 - -0.1
168,843 - -2.0
168,843 - -1.5
168,843 - -1.7
169,076 + MPMX19_06015 0.42 +0.1
169,076 + MPMX19_06015 0.42 +0.3
169,076 + MPMX19_06015 0.42 +0.1
169,076 + MPMX19_06015 0.42 +0.3
169,077 - MPMX19_06015 0.42 -1.7
169,077 - MPMX19_06015 0.42 -0.7
169,077 - MPMX19_06015 0.42 +0.9
169,077 - MPMX19_06015 0.42 -0.1
169,077 - MPMX19_06015 0.42 -0.1
169,077 - MPMX19_06015 0.42 -1.1
169,077 - MPMX19_06015 0.42 -0.5
169,077 - MPMX19_06015 0.42 -0.1
169,077 - MPMX19_06015 0.42 -1.7
169,077 - MPMX19_06015 0.42 -1.7
169,077 - MPMX19_06015 0.42 +1.4
169,077 - MPMX19_06015 0.42 +0.3
169,077 - MPMX19_06015 0.42 -1.1
169,356 - MPMX19_06015 0.82 +1.3
169,454 + +0.1
169,454 + +1.3
169,454 + -0.1
169,454 + -0.7
169,454 + -0.5
169,454 + -0.1
169,454 + -1.7
169,454 + -1.7
169,454 + -0.7
169,454 + -1.0
169,454 + -1.0
169,454 + +0.9
169,454 + -1.7
169,454 + -1.7
169,454 + -0.1
169,454 + +0.9
169,454 + -0.5
169,454 + -0.4
169,454 + -0.1
169,455 - -0.9
169,455 - -0.5
169,455 - +0.3
169,455 - -1.4
169,455 - +1.9
169,455 - +0.3
169,455 - -0.7
169,455 - -0.5
169,455 - +0.3
169,455 - -1.1
169,455 - -0.7
169,455 - -0.1
169,455 - -0.7
169,455 - -0.6
169,455 - -0.5
169,455 - -2.0
169,455 - -0.1
169,599 + MPMX19_06016 0.14 +0.3
169,599 + MPMX19_06016 0.14 +1.1
169,599 + MPMX19_06016 0.14 -1.1
169,599 + MPMX19_06016 0.14 +0.3
169,599 + MPMX19_06016 0.14 -0.1
169,599 + MPMX19_06016 0.14 -2.0
169,599 + MPMX19_06016 0.14 +0.6
169,599 + MPMX19_06016 0.14 -0.7
169,599 + MPMX19_06016 0.14 +0.5
169,812 + MPMX19_06016 0.40 +0.5
169,813 - MPMX19_06016 0.40 -0.7
169,813 - MPMX19_06016 0.40 -0.1
169,813 - MPMX19_06016 0.40 -0.5
169,813 - MPMX19_06016 0.40 -1.3
169,911 + MPMX19_06016 0.52 +0.0
169,911 + MPMX19_06016 0.52 +0.7
169,911 + MPMX19_06016 0.52 -1.1
169,911 + MPMX19_06016 0.52 -3.0
169,911 + MPMX19_06016 0.52 -1.1
169,911 + MPMX19_06016 0.52 +0.3
169,911 + MPMX19_06016 0.52 +0.4
169,911 + MPMX19_06016 0.52 +0.1
169,911 + MPMX19_06016 0.52 -0.1
169,911 + MPMX19_06016 0.52 -1.6
169,912 - MPMX19_06016 0.52 +1.1
169,912 - MPMX19_06016 0.52 +1.4
169,912 - MPMX19_06016 0.52 -2.0
169,912 - MPMX19_06016 0.52 -0.5
169,912 - MPMX19_06016 0.52 -0.6
169,912 - MPMX19_06016 0.52 -1.7
169,912 - MPMX19_06016 0.52 -0.9
169,912 - MPMX19_06016 0.52 -0.8
170,040 + MPMX19_06016 0.67 -1.3
170,040 + MPMX19_06016 0.67 +0.9
170,041 - MPMX19_06016 0.67 +0.9
170,049 + MPMX19_06016 0.68 +0.9
170,070 + MPMX19_06016 0.71 +0.3
170,070 + MPMX19_06016 0.71 -0.8
170,071 - MPMX19_06016 0.71 +0.4
170,071 - MPMX19_06016 0.71 -1.3
170,071 - MPMX19_06016 0.71 -1.7
170,106 + MPMX19_06016 0.75 +0.6
170,106 + MPMX19_06016 0.75 -0.5
170,106 + MPMX19_06016 0.75 +0.2
170,106 + MPMX19_06016 0.75 -0.7
170,106 + MPMX19_06016 0.75 -1.0
170,106 + MPMX19_06016 0.75 -0.1
170,106 + MPMX19_06016 0.75 +0.4
170,106 + MPMX19_06016 0.75 +0.3
170,106 + MPMX19_06016 0.75 -1.7
170,106 + MPMX19_06016 0.75 +0.4
170,106 + MPMX19_06016 0.75 -1.1
170,107 - MPMX19_06016 0.75 -1.0
170,107 - MPMX19_06016 0.75 +0.1
170,107 - MPMX19_06016 0.75 -1.1
170,107 - MPMX19_06016 0.75 -0.7
170,107 - MPMX19_06016 0.75 +0.4
170,142 + MPMX19_06016 0.80 -1.5
170,142 + MPMX19_06016 0.80 -0.6
170,142 + MPMX19_06016 0.80 -1.2
170,142 + MPMX19_06016 0.80 +2.4
170,142 + MPMX19_06016 0.80 +0.2
170,142 + MPMX19_06016 0.80 -1.6
170,142 + MPMX19_06016 0.80 +0.9
170,142 + MPMX19_06016 0.80 -0.7
170,142 + MPMX19_06016 0.80 -1.7
170,143 - MPMX19_06016 0.80 +0.4
170,143 - MPMX19_06016 0.80 +1.3
170,190 + MPMX19_06016 0.85 +1.2
170,190 + MPMX19_06016 0.85 -0.5
170,248 - -1.1
170,248 - -1.1
170,248 - -1.3
170,389 + -0.7
170,389 + +0.4
170,389 + -0.4
170,389 + -1.0
170,389 + -0.7
170,390 - -1.0
170,390 - +0.0
170,390 - -0.4
170,390 - +0.0
170,390 - -0.7
170,390 - -0.1
170,390 - +0.7

Or see this region's nucleotide sequence