Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05512

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05510 and MPMX19_05511 are separated by 94 nucleotidesMPMX19_05511 and MPMX19_05512 are separated by 373 nucleotidesMPMX19_05512 and MPMX19_05513 are separated by 115 nucleotides MPMX19_05510: MPMX19_05510 - hypothetical protein, at 216,259 to 216,549 _05510 MPMX19_05511: MPMX19_05511 - hypothetical protein, at 216,644 to 216,892 _05511 MPMX19_05512: MPMX19_05512 - Homoserine/homoserine lactone efflux protein, at 217,266 to 217,892 _05512 MPMX19_05513: MPMX19_05513 - 3'3'-cGAMP-specific phosphodiesterase 2, at 218,008 to 219,573 _05513 Position (kb) 217 218Strain fitness (log2 ratio) -2 -1 0 1 2at 216.525 kb on + strandat 216.526 kb on - strandat 216.652 kb on - strandat 216.652 kb on - strandat 216.744 kb on + strand, within MPMX19_05511at 216.744 kb on + strand, within MPMX19_05511at 216.744 kb on + strand, within MPMX19_05511at 216.744 kb on + strand, within MPMX19_05511at 216.745 kb on - strand, within MPMX19_05511at 216.745 kb on - strand, within MPMX19_05511at 216.745 kb on - strand, within MPMX19_05511at 216.865 kb on + strand, within MPMX19_05511at 216.865 kb on + strand, within MPMX19_05511at 216.865 kb on + strand, within MPMX19_05511at 216.866 kb on - strand, within MPMX19_05511at 216.866 kb on - strand, within MPMX19_05511at 216.866 kb on - strand, within MPMX19_05511at 217.062 kb on + strandat 217.062 kb on + strandat 217.062 kb on + strandat 217.062 kb on + strandat 217.062 kb on + strandat 217.062 kb on + strandat 217.063 kb on - strandat 217.063 kb on - strandat 217.063 kb on - strandat 217.063 kb on - strandat 217.063 kb on - strandat 217.077 kb on + strandat 217.243 kb on + strandat 217.244 kb on - strandat 217.244 kb on - strandat 217.249 kb on + strandat 217.249 kb on + strandat 217.249 kb on + strandat 217.250 kb on - strandat 217.250 kb on - strandat 217.250 kb on - strandat 217.250 kb on - strandat 217.250 kb on - strandat 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.509 kb on + strand, within MPMX19_05512at 217.509 kb on + strand, within MPMX19_05512at 217.509 kb on + strand, within MPMX19_05512at 217.509 kb on + strand, within MPMX19_05512at 217.510 kb on - strand, within MPMX19_05512at 217.510 kb on - strand, within MPMX19_05512at 217.510 kb on - strand, within MPMX19_05512at 217.510 kb on - strand, within MPMX19_05512at 217.510 kb on - strand, within MPMX19_05512at 217.518 kb on + strand, within MPMX19_05512at 217.518 kb on + strand, within MPMX19_05512at 217.519 kb on - strand, within MPMX19_05512at 217.519 kb on - strand, within MPMX19_05512at 217.519 kb on - strand, within MPMX19_05512at 217.519 kb on - strand, within MPMX19_05512at 217.519 kb on - strand, within MPMX19_05512at 217.519 kb on - strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.761 kb on + strand, within MPMX19_05512at 217.762 kb on - strand, within MPMX19_05512at 217.762 kb on - strand, within MPMX19_05512at 217.762 kb on - strand, within MPMX19_05512at 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.915 kb on - strandat 217.915 kb on - strandat 217.915 kb on - strandat 217.915 kb on - strandat 217.915 kb on - strandat 217.916 kb on + strandat 217.916 kb on + strandat 217.916 kb on + strandat 217.916 kb on + strandat 217.916 kb on + strandat 217.916 kb on + strandat 217.916 kb on + strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 218.236 kb on + strand, within MPMX19_05513at 218.236 kb on + strand, within MPMX19_05513at 218.237 kb on - strand, within MPMX19_05513at 218.237 kb on - strand, within MPMX19_05513at 218.237 kb on - strand, within MPMX19_05513at 218.237 kb on - strand, within MPMX19_05513at 218.237 kb on - strand, within MPMX19_05513at 218.237 kb on - strand, within MPMX19_05513at 218.237 kb on - strand, within MPMX19_05513at 218.452 kb on + strand, within MPMX19_05513at 218.452 kb on + strand, within MPMX19_05513at 218.452 kb on + strand, within MPMX19_05513at 218.452 kb on + strand, within MPMX19_05513at 218.452 kb on + strand, within MPMX19_05513at 218.452 kb on + strand, within MPMX19_05513at 218.453 kb on - strand, within MPMX19_05513at 218.453 kb on - strand, within MPMX19_05513at 218.453 kb on - strand, within MPMX19_05513at 218.488 kb on + strand, within MPMX19_05513at 218.488 kb on + strand, within MPMX19_05513at 218.488 kb on + strand, within MPMX19_05513at 218.489 kb on - strand, within MPMX19_05513at 218.489 kb on - strand, within MPMX19_05513at 218.489 kb on - strand, within MPMX19_05513at 218.518 kb on + strand, within MPMX19_05513at 218.518 kb on + strand, within MPMX19_05513at 218.518 kb on + strand, within MPMX19_05513at 218.518 kb on + strand, within MPMX19_05513at 218.519 kb on - strand, within MPMX19_05513at 218.519 kb on - strand, within MPMX19_05513

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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216,525 + +0.4
216,526 - -0.2
216,652 - -0.1
216,652 - -2.4
216,744 + MPMX19_05511 0.40 -0.4
216,744 + MPMX19_05511 0.40 -1.5
216,744 + MPMX19_05511 0.40 -0.4
216,744 + MPMX19_05511 0.40 -1.2
216,745 - MPMX19_05511 0.41 +0.5
216,745 - MPMX19_05511 0.41 -0.8
216,745 - MPMX19_05511 0.41 -0.1
216,865 + MPMX19_05511 0.89 -2.1
216,865 + MPMX19_05511 0.89 -0.7
216,865 + MPMX19_05511 0.89 +1.8
216,866 - MPMX19_05511 0.89 -1.8
216,866 - MPMX19_05511 0.89 -1.5
216,866 - MPMX19_05511 0.89 +0.3
217,062 + -0.4
217,062 + -0.9
217,062 + -1.0
217,062 + -0.8
217,062 + -0.4
217,062 + -2.4
217,063 - -0.8
217,063 - +0.4
217,063 - +0.3
217,063 - -0.2
217,063 - -0.2
217,077 + -1.9
217,243 + -0.9
217,244 - -0.5
217,244 - +0.6
217,249 + -1.8
217,249 + +0.0
217,249 + +0.8
217,250 - -1.0
217,250 - -0.2
217,250 - -2.4
217,250 - +0.8
217,250 - +0.1
217,353 + MPMX19_05512 0.14 +0.0
217,353 + MPMX19_05512 0.14 -0.2
217,353 + MPMX19_05512 0.14 -0.4
217,353 + MPMX19_05512 0.14 -1.5
217,353 + MPMX19_05512 0.14 -1.5
217,353 + MPMX19_05512 0.14 -1.0
217,353 + MPMX19_05512 0.14 +1.6
217,353 + MPMX19_05512 0.14 -1.4
217,353 + MPMX19_05512 0.14 -0.1
217,353 + MPMX19_05512 0.14 +0.6
217,353 + MPMX19_05512 0.14 -0.4
217,353 + MPMX19_05512 0.14 -0.7
217,353 + MPMX19_05512 0.14 -1.5
217,353 + MPMX19_05512 0.14 +0.2
217,354 - MPMX19_05512 0.14 -0.5
217,354 - MPMX19_05512 0.14 +0.0
217,354 - MPMX19_05512 0.14 -0.2
217,354 - MPMX19_05512 0.14 -1.0
217,354 - MPMX19_05512 0.14 +0.3
217,354 - MPMX19_05512 0.14 -1.2
217,354 - MPMX19_05512 0.14 -0.4
217,354 - MPMX19_05512 0.14 -0.9
217,354 - MPMX19_05512 0.14 -1.8
217,354 - MPMX19_05512 0.14 -0.3
217,354 - MPMX19_05512 0.14 +0.8
217,354 - MPMX19_05512 0.14 -1.6
217,354 - MPMX19_05512 0.14 -2.0
217,354 - MPMX19_05512 0.14 -0.5
217,354 - MPMX19_05512 0.14 -0.8
217,509 + MPMX19_05512 0.39 -1.8
217,509 + MPMX19_05512 0.39 -0.5
217,509 + MPMX19_05512 0.39 -0.8
217,509 + MPMX19_05512 0.39 +0.4
217,510 - MPMX19_05512 0.39 -1.0
217,510 - MPMX19_05512 0.39 +0.4
217,510 - MPMX19_05512 0.39 -1.0
217,510 - MPMX19_05512 0.39 -1.5
217,510 - MPMX19_05512 0.39 -1.2
217,518 + MPMX19_05512 0.40 +0.3
217,518 + MPMX19_05512 0.40 -2.2
217,519 - MPMX19_05512 0.40 +1.0
217,519 - MPMX19_05512 0.40 -0.4
217,519 - MPMX19_05512 0.40 -1.8
217,519 - MPMX19_05512 0.40 +0.0
217,519 - MPMX19_05512 0.40 -0.5
217,519 - MPMX19_05512 0.40 -0.6
217,614 + MPMX19_05512 0.56 -0.3
217,614 + MPMX19_05512 0.56 -1.1
217,614 + MPMX19_05512 0.56 -1.5
217,614 + MPMX19_05512 0.56 -0.2
217,614 + MPMX19_05512 0.56 +1.4
217,614 + MPMX19_05512 0.56 -0.6
217,614 + MPMX19_05512 0.56 -1.4
217,614 + MPMX19_05512 0.56 +0.3
217,614 + MPMX19_05512 0.56 -0.1
217,614 + MPMX19_05512 0.56 +0.2
217,614 + MPMX19_05512 0.56 +0.6
217,614 + MPMX19_05512 0.56 -0.5
217,614 + MPMX19_05512 0.56 -0.4
217,614 + MPMX19_05512 0.56 -0.5
217,614 + MPMX19_05512 0.56 -0.5
217,615 - MPMX19_05512 0.56 -1.1
217,615 - MPMX19_05512 0.56 +0.4
217,615 - MPMX19_05512 0.56 +0.8
217,615 - MPMX19_05512 0.56 -0.8
217,615 - MPMX19_05512 0.56 -1.3
217,615 - MPMX19_05512 0.56 +0.0
217,615 - MPMX19_05512 0.56 -0.2
217,615 - MPMX19_05512 0.56 -0.6
217,615 - MPMX19_05512 0.56 -0.0
217,615 - MPMX19_05512 0.56 -0.5
217,615 - MPMX19_05512 0.56 -0.5
217,615 - MPMX19_05512 0.56 -0.7
217,615 - MPMX19_05512 0.56 -0.0
217,761 + MPMX19_05512 0.79 +0.8
217,762 - MPMX19_05512 0.79 +0.8
217,762 - MPMX19_05512 0.79 -0.2
217,762 - MPMX19_05512 0.79 -1.2
217,914 + +0.4
217,914 + +0.4
217,914 + -2.4
217,914 + -1.5
217,914 + -0.8
217,914 + +0.2
217,914 + -0.9
217,914 + +0.5
217,914 + +0.0
217,914 + -0.5
217,914 + -1.5
217,914 + -0.6
217,914 + +1.0
217,915 - -0.2
217,915 - +0.2
217,915 - +0.5
217,915 - +0.2
217,915 - -2.4
217,916 + -0.8
217,916 + -1.5
217,916 + +0.4
217,916 + -0.2
217,916 + -1.8
217,916 + -2.5
217,916 + -0.0
217,917 - -0.8
217,917 - -0.8
217,917 - -1.6
217,917 - +0.8
217,917 - +1.1
217,917 - +1.2
217,917 - -0.8
217,917 - +0.2
217,917 - -0.5
217,917 - +0.2
217,917 - -0.8
217,917 - -1.2
217,917 - -1.8
218,236 + MPMX19_05513 0.15 -0.1
218,236 + MPMX19_05513 0.15 -0.6
218,237 - MPMX19_05513 0.15 +0.8
218,237 - MPMX19_05513 0.15 -0.2
218,237 - MPMX19_05513 0.15 -1.2
218,237 - MPMX19_05513 0.15 -0.3
218,237 - MPMX19_05513 0.15 -1.0
218,237 - MPMX19_05513 0.15 -0.8
218,237 - MPMX19_05513 0.15 -1.1
218,452 + MPMX19_05513 0.28 +1.2
218,452 + MPMX19_05513 0.28 -1.5
218,452 + MPMX19_05513 0.28 +0.5
218,452 + MPMX19_05513 0.28 -0.8
218,452 + MPMX19_05513 0.28 -1.1
218,452 + MPMX19_05513 0.28 +0.0
218,453 - MPMX19_05513 0.28 -1.1
218,453 - MPMX19_05513 0.28 +0.1
218,453 - MPMX19_05513 0.28 +0.0
218,488 + MPMX19_05513 0.31 -0.2
218,488 + MPMX19_05513 0.31 -0.5
218,488 + MPMX19_05513 0.31 -0.1
218,489 - MPMX19_05513 0.31 -0.5
218,489 - MPMX19_05513 0.31 -1.8
218,489 - MPMX19_05513 0.31 +0.4
218,518 + MPMX19_05513 0.33 -1.2
218,518 + MPMX19_05513 0.33 -0.4
218,518 + MPMX19_05513 0.33 -2.5
218,518 + MPMX19_05513 0.33 +0.2
218,519 - MPMX19_05513 0.33 -0.0
218,519 - MPMX19_05513 0.33 -0.8

Or see this region's nucleotide sequence