Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05206

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05205 and MPMX19_05206 are separated by 482 nucleotidesMPMX19_05206 and MPMX19_05207 are separated by 142 nucleotides MPMX19_05205: MPMX19_05205 - hypothetical protein, at 709,353 to 710,384 _05205 MPMX19_05206: MPMX19_05206 - Toxin RTX-I translocation ATP-binding protein, at 710,867 to 713,029 _05206 MPMX19_05207: MPMX19_05207 - Hemolysin secretion protein D, plasmid, at 713,172 to 714,488 _05207 Position (kb) 710 711 712 713 714Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 710.242 kb on + strand, within MPMX19_05205at 710.254 kb on + strand, within MPMX19_05205at 710.549 kb on + strandat 710.644 kb on + strandat 710.644 kb on + strandat 710.648 kb on + strandat 710.649 kb on - strandat 710.674 kb on + strandat 710.920 kb on + strandat 710.920 kb on + strandat 710.920 kb on + strandat 710.920 kb on + strandat 710.920 kb on + strandat 710.920 kb on + strandat 710.921 kb on - strandat 710.921 kb on - strandat 710.921 kb on - strandat 711.125 kb on + strand, within MPMX19_05206at 711.125 kb on + strand, within MPMX19_05206at 711.125 kb on + strand, within MPMX19_05206at 711.125 kb on + strand, within MPMX19_05206at 711.126 kb on - strand, within MPMX19_05206at 711.126 kb on - strand, within MPMX19_05206at 711.320 kb on + strand, within MPMX19_05206at 711.320 kb on + strand, within MPMX19_05206at 711.320 kb on + strand, within MPMX19_05206at 711.512 kb on + strand, within MPMX19_05206at 711.512 kb on + strand, within MPMX19_05206at 711.512 kb on + strand, within MPMX19_05206at 711.512 kb on + strand, within MPMX19_05206at 711.512 kb on + strand, within MPMX19_05206at 711.512 kb on + strand, within MPMX19_05206at 711.512 kb on + strand, within MPMX19_05206at 711.513 kb on - strand, within MPMX19_05206at 711.513 kb on - strand, within MPMX19_05206at 711.513 kb on - strand, within MPMX19_05206at 711.596 kb on + strand, within MPMX19_05206at 711.597 kb on - strand, within MPMX19_05206at 711.597 kb on - strand, within MPMX19_05206at 711.737 kb on + strand, within MPMX19_05206at 711.737 kb on + strand, within MPMX19_05206at 711.737 kb on + strand, within MPMX19_05206at 711.737 kb on + strand, within MPMX19_05206at 711.737 kb on + strand, within MPMX19_05206at 711.738 kb on - strand, within MPMX19_05206at 711.738 kb on - strand, within MPMX19_05206at 711.738 kb on - strand, within MPMX19_05206at 711.738 kb on - strand, within MPMX19_05206at 711.738 kb on - strand, within MPMX19_05206at 711.782 kb on + strand, within MPMX19_05206at 711.782 kb on + strand, within MPMX19_05206at 711.783 kb on - strand, within MPMX19_05206at 711.959 kb on + strand, within MPMX19_05206at 711.959 kb on + strand, within MPMX19_05206at 711.959 kb on + strand, within MPMX19_05206at 711.959 kb on + strand, within MPMX19_05206at 711.959 kb on + strand, within MPMX19_05206at 711.959 kb on + strand, within MPMX19_05206at 711.959 kb on + strand, within MPMX19_05206at 711.959 kb on + strand, within MPMX19_05206at 711.960 kb on - strand, within MPMX19_05206at 711.960 kb on - strand, within MPMX19_05206at 711.960 kb on - strand, within MPMX19_05206at 711.960 kb on - strand, within MPMX19_05206at 711.960 kb on - strand, within MPMX19_05206at 711.960 kb on - strand, within MPMX19_05206at 711.960 kb on - strand, within MPMX19_05206at 711.960 kb on - strand, within MPMX19_05206at 711.960 kb on - strand, within MPMX19_05206at 712.052 kb on + strand, within MPMX19_05206at 712.052 kb on + strand, within MPMX19_05206at 712.052 kb on + strand, within MPMX19_05206at 712.052 kb on + strand, within MPMX19_05206at 712.052 kb on + strand, within MPMX19_05206at 712.052 kb on + strand, within MPMX19_05206at 712.052 kb on + strand, within MPMX19_05206at 712.053 kb on - strand, within MPMX19_05206at 712.053 kb on - strand, within MPMX19_05206at 712.053 kb on - strand, within MPMX19_05206at 712.053 kb on - strand, within MPMX19_05206at 712.053 kb on - strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.433 kb on + strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.434 kb on - strand, within MPMX19_05206at 712.661 kb on + strand, within MPMX19_05206at 712.662 kb on - strand, within MPMX19_05206at 712.968 kb on - strandat 712.968 kb on - strandat 713.793 kb on + strand, within MPMX19_05207at 713.794 kb on - strand, within MPMX19_05207at 713.794 kb on - strand, within MPMX19_05207at 713.794 kb on - strand, within MPMX19_05207

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
710,242 + MPMX19_05205 0.86 -0.8
710,254 + MPMX19_05205 0.87 +0.4
710,549 + -0.8
710,644 + -0.6
710,644 + -0.9
710,648 + -1.4
710,649 - -0.1
710,674 + -0.8
710,920 + +0.4
710,920 + -0.3
710,920 + -2.4
710,920 + +0.7
710,920 + -1.0
710,920 + -0.1
710,921 - -0.1
710,921 - +0.2
710,921 - -0.4
711,125 + MPMX19_05206 0.12 +1.2
711,125 + MPMX19_05206 0.12 -0.2
711,125 + MPMX19_05206 0.12 -0.4
711,125 + MPMX19_05206 0.12 -0.2
711,126 - MPMX19_05206 0.12 +0.8
711,126 - MPMX19_05206 0.12 -0.4
711,320 + MPMX19_05206 0.21 +2.2
711,320 + MPMX19_05206 0.21 -1.4
711,320 + MPMX19_05206 0.21 -0.1
711,512 + MPMX19_05206 0.30 -1.2
711,512 + MPMX19_05206 0.30 -0.3
711,512 + MPMX19_05206 0.30 +0.5
711,512 + MPMX19_05206 0.30 -0.1
711,512 + MPMX19_05206 0.30 -0.3
711,512 + MPMX19_05206 0.30 +0.5
711,512 + MPMX19_05206 0.30 +0.1
711,513 - MPMX19_05206 0.30 +0.4
711,513 - MPMX19_05206 0.30 +1.7
711,513 - MPMX19_05206 0.30 -0.6
711,596 + MPMX19_05206 0.34 +0.7
711,597 - MPMX19_05206 0.34 +0.6
711,597 - MPMX19_05206 0.34 -0.3
711,737 + MPMX19_05206 0.40 +0.5
711,737 + MPMX19_05206 0.40 +0.6
711,737 + MPMX19_05206 0.40 -0.0
711,737 + MPMX19_05206 0.40 +0.5
711,737 + MPMX19_05206 0.40 -0.2
711,738 - MPMX19_05206 0.40 +0.2
711,738 - MPMX19_05206 0.40 -2.3
711,738 - MPMX19_05206 0.40 -0.5
711,738 - MPMX19_05206 0.40 +0.2
711,738 - MPMX19_05206 0.40 -0.4
711,782 + MPMX19_05206 0.42 +0.2
711,782 + MPMX19_05206 0.42 +1.6
711,783 - MPMX19_05206 0.42 -0.6
711,959 + MPMX19_05206 0.50 +0.2
711,959 + MPMX19_05206 0.50 -0.4
711,959 + MPMX19_05206 0.50 +1.2
711,959 + MPMX19_05206 0.50 +0.6
711,959 + MPMX19_05206 0.50 +0.7
711,959 + MPMX19_05206 0.50 -0.2
711,959 + MPMX19_05206 0.50 -0.3
711,959 + MPMX19_05206 0.50 +0.7
711,960 - MPMX19_05206 0.51 +0.4
711,960 - MPMX19_05206 0.51 +0.2
711,960 - MPMX19_05206 0.51 +0.2
711,960 - MPMX19_05206 0.51 +2.5
711,960 - MPMX19_05206 0.51 -1.4
711,960 - MPMX19_05206 0.51 -0.7
711,960 - MPMX19_05206 0.51 -1.0
711,960 - MPMX19_05206 0.51 +0.2
711,960 - MPMX19_05206 0.51 -0.3
712,052 + MPMX19_05206 0.55 -2.8
712,052 + MPMX19_05206 0.55 -0.6
712,052 + MPMX19_05206 0.55 +0.4
712,052 + MPMX19_05206 0.55 +0.4
712,052 + MPMX19_05206 0.55 +0.3
712,052 + MPMX19_05206 0.55 +0.2
712,052 + MPMX19_05206 0.55 -1.3
712,053 - MPMX19_05206 0.55 +0.7
712,053 - MPMX19_05206 0.55 +0.9
712,053 - MPMX19_05206 0.55 -0.8
712,053 - MPMX19_05206 0.55 -0.4
712,053 - MPMX19_05206 0.55 -0.4
712,433 + MPMX19_05206 0.72 -0.3
712,433 + MPMX19_05206 0.72 -1.8
712,433 + MPMX19_05206 0.72 +1.2
712,433 + MPMX19_05206 0.72 +0.2
712,433 + MPMX19_05206 0.72 -0.8
712,433 + MPMX19_05206 0.72 -1.4
712,433 + MPMX19_05206 0.72 -2.0
712,433 + MPMX19_05206 0.72 +0.9
712,433 + MPMX19_05206 0.72 -1.3
712,433 + MPMX19_05206 0.72 +0.3
712,433 + MPMX19_05206 0.72 -0.8
712,433 + MPMX19_05206 0.72 -0.2
712,433 + MPMX19_05206 0.72 +0.7
712,433 + MPMX19_05206 0.72 -1.7
712,433 + MPMX19_05206 0.72 +0.2
712,433 + MPMX19_05206 0.72 -0.2
712,433 + MPMX19_05206 0.72 +0.6
712,433 + MPMX19_05206 0.72 +0.2
712,433 + MPMX19_05206 0.72 +0.0
712,433 + MPMX19_05206 0.72 +0.7
712,433 + MPMX19_05206 0.72 -0.4
712,434 - MPMX19_05206 0.72 -0.6
712,434 - MPMX19_05206 0.72 -0.6
712,434 - MPMX19_05206 0.72 +0.4
712,434 - MPMX19_05206 0.72 -0.0
712,434 - MPMX19_05206 0.72 -0.3
712,434 - MPMX19_05206 0.72 +2.2
712,434 - MPMX19_05206 0.72 -1.4
712,434 - MPMX19_05206 0.72 +1.6
712,434 - MPMX19_05206 0.72 -0.1
712,434 - MPMX19_05206 0.72 -3.3
712,434 - MPMX19_05206 0.72 +2.5
712,434 - MPMX19_05206 0.72 -0.1
712,434 - MPMX19_05206 0.72 +1.6
712,434 - MPMX19_05206 0.72 -1.5
712,434 - MPMX19_05206 0.72 -0.5
712,434 - MPMX19_05206 0.72 +0.6
712,434 - MPMX19_05206 0.72 +1.9
712,434 - MPMX19_05206 0.72 -0.6
712,434 - MPMX19_05206 0.72 -0.4
712,661 + MPMX19_05206 0.83 -2.6
712,662 - MPMX19_05206 0.83 +0.6
712,968 - -0.8
712,968 - -1.0
713,793 + MPMX19_05207 0.47 -2.0
713,794 - MPMX19_05207 0.47 -1.2
713,794 - MPMX19_05207 0.47 +0.2
713,794 - MPMX19_05207 0.47 -0.3

Or see this region's nucleotide sequence