Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04997

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04995 and MPMX19_04996 are separated by 25 nucleotidesMPMX19_04996 and MPMX19_04997 are separated by 33 nucleotidesMPMX19_04997 and MPMX19_04998 are separated by 243 nucleotides MPMX19_04995: MPMX19_04995 - D-alanine aminotransferase, at 475,836 to 476,642 _04995 MPMX19_04996: MPMX19_04996 - hypothetical protein, at 476,668 to 477,111 _04996 MPMX19_04997: MPMX19_04997 - hypothetical protein, at 477,145 to 478,764 _04997 MPMX19_04998: MPMX19_04998 - hypothetical protein, at 479,008 to 479,820 _04998 Position (kb) 477 478 479Strain fitness (log2 ratio) -2 -1 0 1 2 3at 476.277 kb on + strand, within MPMX19_04995at 476.277 kb on + strand, within MPMX19_04995at 476.277 kb on + strand, within MPMX19_04995at 476.278 kb on - strand, within MPMX19_04995at 476.278 kb on - strand, within MPMX19_04995at 476.278 kb on - strand, within MPMX19_04995at 476.278 kb on - strand, within MPMX19_04995at 476.640 kb on + strandat 476.640 kb on + strandat 476.640 kb on + strandat 476.640 kb on + strandat 476.640 kb on + strandat 476.640 kb on + strandat 476.641 kb on - strandat 476.641 kb on - strandat 476.641 kb on - strandat 476.641 kb on - strandat 476.641 kb on - strandat 476.658 kb on - strandat 476.800 kb on + strand, within MPMX19_04996at 476.800 kb on + strand, within MPMX19_04996at 476.801 kb on - strand, within MPMX19_04996at 476.920 kb on + strand, within MPMX19_04996at 476.920 kb on + strand, within MPMX19_04996at 476.921 kb on - strand, within MPMX19_04996at 477.161 kb on + strandat 477.161 kb on + strandat 477.161 kb on + strandat 477.161 kb on + strandat 477.161 kb on + strandat 477.162 kb on - strandat 477.404 kb on + strand, within MPMX19_04997at 477.404 kb on + strand, within MPMX19_04997at 477.405 kb on - strand, within MPMX19_04997at 477.405 kb on - strand, within MPMX19_04997at 477.405 kb on - strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.504 kb on - strand, within MPMX19_04997at 478.631 kb on + strandat 478.631 kb on + strandat 478.631 kb on + strandat 478.631 kb on + strandat 478.631 kb on + strandat 478.631 kb on + strandat 478.631 kb on + strandat 478.631 kb on + strandat 478.631 kb on + strandat 478.631 kb on + strandat 478.631 kb on + strandat 478.631 kb on + strandat 478.631 kb on + strandat 478.631 kb on + strandat 478.631 kb on + strandat 478.631 kb on + strandat 478.631 kb on + strandat 478.631 kb on + strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.632 kb on - strandat 478.824 kb on - strandat 478.828 kb on - strandat 479.128 kb on + strand, within MPMX19_04998at 479.128 kb on + strand, within MPMX19_04998at 479.128 kb on + strand, within MPMX19_04998at 479.128 kb on + strand, within MPMX19_04998at 479.128 kb on + strand, within MPMX19_04998at 479.129 kb on - strand, within MPMX19_04998at 479.129 kb on - strand, within MPMX19_04998at 479.129 kb on - strand, within MPMX19_04998at 479.129 kb on - strand, within MPMX19_04998at 479.129 kb on - strand, within MPMX19_04998at 479.129 kb on - strand, within MPMX19_04998at 479.167 kb on + strand, within MPMX19_04998at 479.458 kb on + strand, within MPMX19_04998at 479.458 kb on + strand, within MPMX19_04998at 479.458 kb on + strand, within MPMX19_04998at 479.458 kb on + strand, within MPMX19_04998at 479.459 kb on - strand, within MPMX19_04998at 479.459 kb on - strand, within MPMX19_04998at 479.459 kb on - strand, within MPMX19_04998at 479.459 kb on - strand, within MPMX19_04998at 479.459 kb on - strand, within MPMX19_04998at 479.459 kb on - strand, within MPMX19_04998at 479.533 kb on + strand, within MPMX19_04998at 479.533 kb on + strand, within MPMX19_04998at 479.533 kb on + strand, within MPMX19_04998at 479.533 kb on + strand, within MPMX19_04998at 479.533 kb on + strand, within MPMX19_04998at 479.533 kb on + strand, within MPMX19_04998at 479.533 kb on + strand, within MPMX19_04998at 479.533 kb on + strand, within MPMX19_04998at 479.533 kb on + strand, within MPMX19_04998at 479.533 kb on + strand, within MPMX19_04998at 479.533 kb on + strand, within MPMX19_04998at 479.533 kb on + strand, within MPMX19_04998at 479.533 kb on + strand, within MPMX19_04998at 479.534 kb on - strand, within MPMX19_04998at 479.534 kb on - strand, within MPMX19_04998at 479.534 kb on - strand, within MPMX19_04998at 479.534 kb on - strand, within MPMX19_04998at 479.534 kb on - strand, within MPMX19_04998at 479.534 kb on - strand, within MPMX19_04998at 479.534 kb on - strand, within MPMX19_04998at 479.534 kb on - strand, within MPMX19_04998at 479.534 kb on - strand, within MPMX19_04998at 479.534 kb on - strand, within MPMX19_04998at 479.534 kb on - strand, within MPMX19_04998at 479.534 kb on - strand, within MPMX19_04998at 479.534 kb on - strand, within MPMX19_04998at 479.534 kb on - strand, within MPMX19_04998at 479.584 kb on + strand, within MPMX19_04998at 479.584 kb on + strand, within MPMX19_04998at 479.584 kb on + strand, within MPMX19_04998at 479.584 kb on + strand, within MPMX19_04998at 479.585 kb on - strand, within MPMX19_04998at 479.585 kb on - strand, within MPMX19_04998at 479.585 kb on - strand, within MPMX19_04998at 479.585 kb on - strand, within MPMX19_04998at 479.585 kb on - strand, within MPMX19_04998at 479.585 kb on - strand, within MPMX19_04998at 479.585 kb on - strand, within MPMX19_04998

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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476,277 + MPMX19_04995 0.55 -1.3
476,277 + MPMX19_04995 0.55 -0.5
476,277 + MPMX19_04995 0.55 +0.6
476,278 - MPMX19_04995 0.55 -2.3
476,278 - MPMX19_04995 0.55 +0.5
476,278 - MPMX19_04995 0.55 -0.7
476,278 - MPMX19_04995 0.55 -1.6
476,640 + +0.4
476,640 + -0.3
476,640 + +0.3
476,640 + -0.3
476,640 + -0.2
476,640 + -0.3
476,641 - -1.0
476,641 - -0.1
476,641 - +1.3
476,641 - -1.6
476,641 - -1.5
476,658 - -0.3
476,800 + MPMX19_04996 0.30 -0.9
476,800 + MPMX19_04996 0.30 -1.2
476,801 - MPMX19_04996 0.30 -0.7
476,920 + MPMX19_04996 0.57 -1.7
476,920 + MPMX19_04996 0.57 -0.8
476,921 - MPMX19_04996 0.57 -0.5
477,161 + -0.5
477,161 + -0.7
477,161 + -0.4
477,161 + +0.1
477,161 + +0.7
477,162 - -0.6
477,404 + MPMX19_04997 0.16 +0.1
477,404 + MPMX19_04997 0.16 +0.2
477,405 - MPMX19_04997 0.16 -1.4
477,405 - MPMX19_04997 0.16 -0.4
477,405 - MPMX19_04997 0.16 -0.3
477,410 + MPMX19_04997 0.16 -0.5
477,410 + MPMX19_04997 0.16 -1.7
477,410 + MPMX19_04997 0.16 -0.9
477,410 + MPMX19_04997 0.16 +0.4
477,410 + MPMX19_04997 0.16 -0.2
477,410 + MPMX19_04997 0.16 +2.4
477,410 + MPMX19_04997 0.16 -1.5
477,410 + MPMX19_04997 0.16 -0.3
477,410 + MPMX19_04997 0.16 -0.3
477,410 + MPMX19_04997 0.16 -0.9
477,410 + MPMX19_04997 0.16 -0.1
477,411 - MPMX19_04997 0.16 -1.5
477,411 - MPMX19_04997 0.16 -0.3
477,411 - MPMX19_04997 0.16 -1.3
477,411 - MPMX19_04997 0.16 -0.5
477,411 - MPMX19_04997 0.16 +0.2
477,411 - MPMX19_04997 0.16 -2.7
477,411 - MPMX19_04997 0.16 +0.1
477,411 - MPMX19_04997 0.16 -0.0
477,411 - MPMX19_04997 0.16 +1.1
477,411 - MPMX19_04997 0.16 +0.1
477,411 - MPMX19_04997 0.16 +0.5
477,411 - MPMX19_04997 0.16 +1.1
477,411 - MPMX19_04997 0.16 -0.8
477,411 - MPMX19_04997 0.16 +0.2
477,411 - MPMX19_04997 0.16 +1.6
477,411 - MPMX19_04997 0.16 +0.5
477,452 + MPMX19_04997 0.19 -0.7
477,452 + MPMX19_04997 0.19 -1.2
477,452 + MPMX19_04997 0.19 -0.0
477,452 + MPMX19_04997 0.19 +0.3
477,452 + MPMX19_04997 0.19 +0.1
477,452 + MPMX19_04997 0.19 -1.3
477,452 + MPMX19_04997 0.19 -0.7
477,452 + MPMX19_04997 0.19 -0.5
477,452 + MPMX19_04997 0.19 +0.2
477,452 + MPMX19_04997 0.19 -0.8
477,453 - MPMX19_04997 0.19 -0.3
477,453 - MPMX19_04997 0.19 -0.5
477,453 - MPMX19_04997 0.19 -1.5
477,453 - MPMX19_04997 0.19 -0.9
477,453 - MPMX19_04997 0.19 +0.5
477,453 - MPMX19_04997 0.19 +0.6
477,453 - MPMX19_04997 0.19 -1.3
477,453 - MPMX19_04997 0.19 -0.3
477,453 - MPMX19_04997 0.19 +0.6
477,453 - MPMX19_04997 0.19 -0.4
477,453 - MPMX19_04997 0.19 +1.1
477,453 - MPMX19_04997 0.19 +0.4
477,453 - MPMX19_04997 0.19 -0.5
477,504 - MPMX19_04997 0.22 +1.1
478,631 + -1.5
478,631 + -0.5
478,631 + +0.5
478,631 + +1.1
478,631 + +0.3
478,631 + +0.8
478,631 + -0.5
478,631 + -0.5
478,631 + -1.1
478,631 + +0.1
478,631 + -1.5
478,631 + +1.1
478,631 + -1.0
478,631 + +0.5
478,631 + -0.1
478,631 + -0.9
478,631 + +1.1
478,631 + -1.4
478,632 - +0.1
478,632 - +0.6
478,632 - -0.9
478,632 - -1.3
478,632 - -0.5
478,632 - -1.0
478,632 - +0.5
478,632 - -0.1
478,632 - -2.0
478,632 - -0.5
478,632 - +0.3
478,632 - -0.3
478,632 - +1.1
478,632 - -0.5
478,632 - -1.9
478,632 - -0.5
478,632 - +0.2
478,632 - +0.5
478,632 - -1.9
478,632 - -0.2
478,632 - +0.3
478,824 - -0.2
478,828 - -1.5
479,128 + MPMX19_04998 0.15 +0.3
479,128 + MPMX19_04998 0.15 -2.3
479,128 + MPMX19_04998 0.15 +0.3
479,128 + MPMX19_04998 0.15 -0.7
479,128 + MPMX19_04998 0.15 -0.5
479,129 - MPMX19_04998 0.15 -0.7
479,129 - MPMX19_04998 0.15 -0.5
479,129 - MPMX19_04998 0.15 +0.7
479,129 - MPMX19_04998 0.15 -0.2
479,129 - MPMX19_04998 0.15 +0.3
479,129 - MPMX19_04998 0.15 +0.5
479,167 + MPMX19_04998 0.20 -0.6
479,458 + MPMX19_04998 0.55 -0.9
479,458 + MPMX19_04998 0.55 -2.1
479,458 + MPMX19_04998 0.55 +0.3
479,458 + MPMX19_04998 0.55 -0.2
479,459 - MPMX19_04998 0.55 -0.5
479,459 - MPMX19_04998 0.55 -0.3
479,459 - MPMX19_04998 0.55 -0.7
479,459 - MPMX19_04998 0.55 -1.1
479,459 - MPMX19_04998 0.55 +0.2
479,459 - MPMX19_04998 0.55 -0.8
479,533 + MPMX19_04998 0.65 +2.7
479,533 + MPMX19_04998 0.65 +0.5
479,533 + MPMX19_04998 0.65 +0.1
479,533 + MPMX19_04998 0.65 -0.9
479,533 + MPMX19_04998 0.65 +3.1
479,533 + MPMX19_04998 0.65 -0.2
479,533 + MPMX19_04998 0.65 -0.2
479,533 + MPMX19_04998 0.65 -0.7
479,533 + MPMX19_04998 0.65 -0.4
479,533 + MPMX19_04998 0.65 +0.3
479,533 + MPMX19_04998 0.65 +0.1
479,533 + MPMX19_04998 0.65 -1.0
479,533 + MPMX19_04998 0.65 +0.6
479,534 - MPMX19_04998 0.65 -1.3
479,534 - MPMX19_04998 0.65 -0.5
479,534 - MPMX19_04998 0.65 -0.0
479,534 - MPMX19_04998 0.65 -0.6
479,534 - MPMX19_04998 0.65 -0.9
479,534 - MPMX19_04998 0.65 -1.4
479,534 - MPMX19_04998 0.65 -0.3
479,534 - MPMX19_04998 0.65 -0.2
479,534 - MPMX19_04998 0.65 +0.5
479,534 - MPMX19_04998 0.65 +0.5
479,534 - MPMX19_04998 0.65 +0.5
479,534 - MPMX19_04998 0.65 +1.7
479,534 - MPMX19_04998 0.65 -1.8
479,534 - MPMX19_04998 0.65 -0.5
479,584 + MPMX19_04998 0.71 -0.1
479,584 + MPMX19_04998 0.71 -0.5
479,584 + MPMX19_04998 0.71 -1.1
479,584 + MPMX19_04998 0.71 -1.3
479,585 - MPMX19_04998 0.71 -0.9
479,585 - MPMX19_04998 0.71 -1.3
479,585 - MPMX19_04998 0.71 +1.1
479,585 - MPMX19_04998 0.71 -0.3
479,585 - MPMX19_04998 0.71 -1.5
479,585 - MPMX19_04998 0.71 -0.5
479,585 - MPMX19_04998 0.71 -1.1

Or see this region's nucleotide sequence