Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04980 and MPMX19_04981 are separated by 10 nucleotides MPMX19_04981 and MPMX19_04982 are separated by 13 nucleotides
MPMX19_04980: MPMX19_04980 - hypothetical protein, at 452,613 to 454,451
_04980
MPMX19_04981: MPMX19_04981 - hypothetical protein, at 454,462 to 455,157
_04981
MPMX19_04982: MPMX19_04982 - hypothetical protein, at 455,171 to 456,856
_04982
Position (kb) 454
455
456 Strain fitness (log2 ratio) -2
-1
0
1
2 at 453.528 kb on + strand, within MPMX19_04980 at 453.528 kb on + strand, within MPMX19_04980 at 453.528 kb on + strand, within MPMX19_04980 at 453.528 kb on + strand, within MPMX19_04980 at 453.528 kb on + strand, within MPMX19_04980 at 453.529 kb on - strand, within MPMX19_04980 at 453.529 kb on - strand, within MPMX19_04980 at 453.630 kb on + strand, within MPMX19_04980 at 453.630 kb on + strand, within MPMX19_04980 at 453.630 kb on + strand, within MPMX19_04980 at 453.630 kb on + strand, within MPMX19_04980 at 453.630 kb on + strand, within MPMX19_04980 at 453.630 kb on + strand, within MPMX19_04980 at 453.630 kb on + strand, within MPMX19_04980 at 453.631 kb on - strand, within MPMX19_04980 at 453.631 kb on - strand, within MPMX19_04980 at 453.631 kb on - strand, within MPMX19_04980 at 454.092 kb on + strand, within MPMX19_04980 at 454.092 kb on + strand, within MPMX19_04980 at 454.092 kb on + strand, within MPMX19_04980 at 454.093 kb on - strand, within MPMX19_04980 at 454.093 kb on - strand, within MPMX19_04980 at 454.242 kb on + strand, within MPMX19_04980 at 454.242 kb on + strand, within MPMX19_04980 at 454.242 kb on + strand, within MPMX19_04980 at 454.242 kb on + strand, within MPMX19_04980 at 454.242 kb on + strand, within MPMX19_04980 at 454.243 kb on - strand, within MPMX19_04980 at 454.243 kb on - strand, within MPMX19_04980 at 454.243 kb on - strand, within MPMX19_04980 at 454.329 kb on + strand at 454.329 kb on + strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.345 kb on - strand at 454.345 kb on - strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.449 kb on + strand at 454.449 kb on + strand at 454.450 kb on - strand at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.700 kb on - strand, within MPMX19_04981 at 454.700 kb on - strand, within MPMX19_04981 at 454.700 kb on - strand, within MPMX19_04981 at 454.700 kb on - strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.934 kb on - strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.940 kb on - strand, within MPMX19_04981 at 454.940 kb on - strand, within MPMX19_04981 at 454.940 kb on - strand, within MPMX19_04981 at 455.155 kb on + strand at 455.155 kb on + strand at 455.155 kb on + strand at 455.155 kb on + strand at 455.155 kb on + strand at 455.155 kb on + strand at 455.156 kb on - strand at 455.182 kb on - strand at 455.249 kb on + strand at 455.249 kb on + strand at 455.249 kb on + strand at 455.249 kb on + strand at 455.250 kb on - strand at 455.250 kb on - strand at 455.469 kb on + strand, within MPMX19_04982 at 455.469 kb on + strand, within MPMX19_04982 at 455.469 kb on + strand, within MPMX19_04982 at 455.469 kb on + strand, within MPMX19_04982 at 455.469 kb on + strand, within MPMX19_04982 at 455.594 kb on + strand, within MPMX19_04982 at 455.594 kb on + strand, within MPMX19_04982 at 455.595 kb on - strand, within MPMX19_04982 at 455.595 kb on - strand, within MPMX19_04982 at 455.621 kb on + strand, within MPMX19_04982 at 455.621 kb on + strand, within MPMX19_04982 at 455.621 kb on + strand, within MPMX19_04982 at 455.621 kb on + strand, within MPMX19_04982 at 455.621 kb on - strand, within MPMX19_04982 at 455.622 kb on - strand, within MPMX19_04982 at 455.622 kb on - strand, within MPMX19_04982 at 455.622 kb on - strand, within MPMX19_04982 at 455.657 kb on + strand, within MPMX19_04982 at 455.658 kb on - strand, within MPMX19_04982 at 455.658 kb on - strand, within MPMX19_04982 at 455.658 kb on - strand, within MPMX19_04982 at 455.702 kb on + strand, within MPMX19_04982 at 455.702 kb on + strand, within MPMX19_04982 at 455.703 kb on - strand, within MPMX19_04982 at 455.987 kb on + strand, within MPMX19_04982 at 455.987 kb on + strand, within MPMX19_04982 at 455.987 kb on + strand, within MPMX19_04982 at 455.988 kb on - strand, within MPMX19_04982 at 455.988 kb on - strand, within MPMX19_04982 at 455.988 kb on - strand, within MPMX19_04982 at 455.997 kb on - strand, within MPMX19_04982 at 456.029 kb on + strand, within MPMX19_04982 at 456.029 kb on + strand, within MPMX19_04982 at 456.030 kb on - strand, within MPMX19_04982 at 456.030 kb on - strand, within MPMX19_04982
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 453,528 + MPMX19_04980 0.50 -1.3 453,528 + MPMX19_04980 0.50 +0.4 453,528 + MPMX19_04980 0.50 -0.4 453,528 + MPMX19_04980 0.50 -0.1 453,528 + MPMX19_04980 0.50 -0.6 453,529 - MPMX19_04980 0.50 +0.6 453,529 - MPMX19_04980 0.50 -1.6 453,630 + MPMX19_04980 0.55 -0.9 453,630 + MPMX19_04980 0.55 +0.3 453,630 + MPMX19_04980 0.55 -2.3 453,630 + MPMX19_04980 0.55 -0.1 453,630 + MPMX19_04980 0.55 +0.6 453,630 + MPMX19_04980 0.55 -0.5 453,630 + MPMX19_04980 0.55 +0.1 453,631 - MPMX19_04980 0.55 -0.3 453,631 - MPMX19_04980 0.55 +0.1 453,631 - MPMX19_04980 0.55 -0.4 454,092 + MPMX19_04980 0.80 -0.3 454,092 + MPMX19_04980 0.80 -0.1 454,092 + MPMX19_04980 0.80 +1.5 454,093 - MPMX19_04980 0.80 -0.6 454,093 - MPMX19_04980 0.80 +0.1 454,242 + MPMX19_04980 0.89 -0.7 454,242 + MPMX19_04980 0.89 +0.7 454,242 + MPMX19_04980 0.89 +1.6 454,242 + MPMX19_04980 0.89 -1.3 454,242 + MPMX19_04980 0.89 +0.1 454,243 - MPMX19_04980 0.89 +0.3 454,243 - MPMX19_04980 0.89 +0.3 454,243 - MPMX19_04980 0.89 -1.5 454,329 + -0.2 454,329 + -1.3 454,330 - -0.3 454,330 - -0.9 454,330 - -0.2 454,330 - +0.4 454,330 - -0.7 454,330 - -0.3 454,345 - -0.7 454,345 - -0.4 454,356 + -0.9 454,356 + -0.3 454,356 + +0.2 454,356 + -0.7 454,356 + -1.3 454,356 + +1.4 454,356 + -0.7 454,356 + -0.0 454,356 + -0.5 454,356 + +0.3 454,356 + -0.3 454,356 + +0.2 454,356 + -1.5 454,356 + -0.7 454,356 + -0.2 454,356 + +1.4 454,356 + +0.4 454,357 - -1.1 454,357 - -0.5 454,357 - -0.3 454,357 - -0.5 454,357 - -0.1 454,357 - +1.1 454,357 - +0.1 454,357 - -0.9 454,357 - -1.9 454,357 - +0.1 454,357 - -1.7 454,357 - +1.1 454,357 - +0.5 454,357 - +0.5 454,437 + -1.7 454,437 + -1.3 454,437 + +2.2 454,437 + -1.3 454,437 + -1.3 454,437 + +0.8 454,437 + +0.4 454,437 + +0.3 454,437 + -1.1 454,437 + +0.2 454,437 + +1.1 454,437 + +0.5 454,437 + -0.5 454,437 + -1.3 454,438 - -0.7 454,438 - +1.1 454,438 - +0.3 454,438 - -0.5 454,438 - +0.3 454,438 - +0.2 454,438 - -1.0 454,449 + -1.5 454,449 + -1.4 454,450 - +0.6 454,699 + MPMX19_04981 0.34 -0.9 454,699 + MPMX19_04981 0.34 +1.4 454,699 + MPMX19_04981 0.34 -1.3 454,699 + MPMX19_04981 0.34 -0.3 454,699 + MPMX19_04981 0.34 +1.9 454,699 + MPMX19_04981 0.34 +0.3 454,699 + MPMX19_04981 0.34 -1.5 454,699 + MPMX19_04981 0.34 -0.5 454,699 + MPMX19_04981 0.34 -1.6 454,699 + MPMX19_04981 0.34 +0.1 454,700 - MPMX19_04981 0.34 +0.5 454,700 - MPMX19_04981 0.34 +0.3 454,700 - MPMX19_04981 0.34 -1.3 454,700 - MPMX19_04981 0.34 -0.8 454,708 + MPMX19_04981 0.35 +2.1 454,708 + MPMX19_04981 0.35 +0.8 454,708 + MPMX19_04981 0.35 -1.9 454,708 + MPMX19_04981 0.35 +0.1 454,708 + MPMX19_04981 0.35 +1.3 454,708 + MPMX19_04981 0.35 -0.7 454,708 + MPMX19_04981 0.35 -0.9 454,709 - MPMX19_04981 0.35 +1.5 454,709 - MPMX19_04981 0.35 +0.1 454,709 - MPMX19_04981 0.35 +0.1 454,709 - MPMX19_04981 0.35 -0.7 454,709 - MPMX19_04981 0.35 -0.2 454,837 + MPMX19_04981 0.54 -1.5 454,837 + MPMX19_04981 0.54 -1.9 454,837 + MPMX19_04981 0.54 -1.4 454,837 + MPMX19_04981 0.54 +0.2 454,837 + MPMX19_04981 0.54 -0.9 454,837 + MPMX19_04981 0.54 -0.3 454,837 + MPMX19_04981 0.54 -0.7 454,837 + MPMX19_04981 0.54 +0.5 454,837 + MPMX19_04981 0.54 +0.2 454,837 + MPMX19_04981 0.54 -1.6 454,837 + MPMX19_04981 0.54 -0.2 454,838 - MPMX19_04981 0.54 -2.3 454,838 - MPMX19_04981 0.54 +1.3 454,838 - MPMX19_04981 0.54 -2.4 454,838 - MPMX19_04981 0.54 -1.1 454,838 - MPMX19_04981 0.54 +0.1 454,838 - MPMX19_04981 0.54 +0.4 454,934 - MPMX19_04981 0.68 +0.6 454,939 + MPMX19_04981 0.69 -0.7 454,939 + MPMX19_04981 0.69 +0.1 454,939 + MPMX19_04981 0.69 -1.9 454,939 + MPMX19_04981 0.69 -1.3 454,939 + MPMX19_04981 0.69 -1.1 454,939 + MPMX19_04981 0.69 -0.1 454,940 - MPMX19_04981 0.69 -0.4 454,940 - MPMX19_04981 0.69 +0.1 454,940 - MPMX19_04981 0.69 +0.3 455,155 + -2.4 455,155 + -0.9 455,155 + -1.3 455,155 + +0.1 455,155 + -1.5 455,155 + -1.2 455,156 - -1.3 455,182 - -1.7 455,249 + -1.4 455,249 + -1.9 455,249 + -1.3 455,249 + -2.6 455,250 - -0.1 455,250 - -1.9 455,469 + MPMX19_04982 0.18 +0.2 455,469 + MPMX19_04982 0.18 -0.0 455,469 + MPMX19_04982 0.18 -0.9 455,469 + MPMX19_04982 0.18 -0.3 455,469 + MPMX19_04982 0.18 -0.8 455,594 + MPMX19_04982 0.25 -0.4 455,594 + MPMX19_04982 0.25 -0.3 455,595 - MPMX19_04982 0.25 -1.1 455,595 - MPMX19_04982 0.25 -1.8 455,621 + MPMX19_04982 0.27 -0.9 455,621 + MPMX19_04982 0.27 +0.6 455,621 + MPMX19_04982 0.27 -0.9 455,621 + MPMX19_04982 0.27 -0.5 455,621 - MPMX19_04982 0.27 -0.4 455,622 - MPMX19_04982 0.27 +0.7 455,622 - MPMX19_04982 0.27 +1.1 455,622 - MPMX19_04982 0.27 -0.3 455,657 + MPMX19_04982 0.29 -1.7 455,658 - MPMX19_04982 0.29 +1.6 455,658 - MPMX19_04982 0.29 +0.3 455,658 - MPMX19_04982 0.29 -0.4 455,702 + MPMX19_04982 0.31 +1.1 455,702 + MPMX19_04982 0.31 -0.6 455,703 - MPMX19_04982 0.32 +0.5 455,987 + MPMX19_04982 0.48 -1.1 455,987 + MPMX19_04982 0.48 +0.5 455,987 + MPMX19_04982 0.48 -0.9 455,988 - MPMX19_04982 0.48 +0.1 455,988 - MPMX19_04982 0.48 -0.8 455,988 - MPMX19_04982 0.48 +0.1 455,997 - MPMX19_04982 0.49 +0.3 456,029 + MPMX19_04982 0.51 +1.8 456,029 + MPMX19_04982 0.51 -0.4 456,030 - MPMX19_04982 0.51 +0.1 456,030 - MPMX19_04982 0.51 +1.7
Or see this region's nucleotide sequence